Strain Fitness in Pantoea sp. MT58 around IAI47_08300

Experiment: Ying_all64 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 3
1,754,756	+				+1.1
1,754,774	+				-0.3
1,754,845	+				+0.3
1,754,845	+				+2.6
1,754,845	+				+2.0
1,754,846	-				-0.1
1,754,846	-				+0.5
1,754,846	-				+2.3
1,754,885	+				-0.2
1,754,896	+		IAI47_08295	0.10	+2.4
1,754,896	+		IAI47_08295	0.10	+0.7
1,754,920	+		IAI47_08295	0.13	+1.8
1,754,941	+		IAI47_08295	0.15	+1.9
1,754,978	+		IAI47_08295	0.19	+1.7
1,754,978	+		IAI47_08295	0.19	+0.9
1,754,978	+		IAI47_08295	0.19	+2.1
1,754,978	+		IAI47_08295	0.19	+0.8
1,754,979	-		IAI47_08295	0.19	+1.8
1,754,983	+		IAI47_08295	0.20	+1.2
1,754,983	+		IAI47_08295	0.20	+1.8
1,755,035	-		IAI47_08295	0.25	+0.4
1,755,088	+		IAI47_08295	0.31	+0.2
1,755,089	-		IAI47_08295	0.31	+1.1
1,755,091	+		IAI47_08295	0.31	+1.8
1,755,091	+		IAI47_08295	0.31	+1.1
1,755,091	+		IAI47_08295	0.31	+2.7
1,755,091	+		IAI47_08295	0.31	+1.7
1,755,092	-		IAI47_08295	0.31	+0.3
1,755,104	-		IAI47_08295	0.32	+1.5
1,755,104	-		IAI47_08295	0.32	+1.4
1,755,150	+		IAI47_08295	0.37	+2.1
1,755,193	+		IAI47_08295	0.42	+1.7
1,755,193	+		IAI47_08295	0.42	+0.7
1,755,194	-		IAI47_08295	0.42	+1.1
1,755,244	+		IAI47_08295	0.47	-0.1
1,755,253	+		IAI47_08295	0.48	+0.3
1,755,281	-		IAI47_08295	0.51	+2.7
1,755,281	-		IAI47_08295	0.51	+0.1
1,755,308	+		IAI47_08295	0.54	+0.7
1,755,308	+		IAI47_08295	0.54	+1.3
1,755,308	+		IAI47_08295	0.54	+0.5
1,755,308	+		IAI47_08295	0.54	+0.1
1,755,308	+		IAI47_08295	0.54	+0.9
1,755,308	+		IAI47_08295	0.54	+1.6
1,755,308	+		IAI47_08295	0.54	-1.0
1,755,308	+		IAI47_08295	0.54	+0.5
1,755,308	+		IAI47_08295	0.54	+1.7
1,755,309	-		IAI47_08295	0.54	+1.4
1,755,309	-		IAI47_08295	0.54	+2.1
1,755,309	-		IAI47_08295	0.54	+2.7
1,755,309	-		IAI47_08295	0.54	+0.0
1,755,309	-		IAI47_08295	0.54	+0.3
1,755,309	-		IAI47_08295	0.54	+0.1
1,755,310	+		IAI47_08295	0.54	-0.2
1,755,310	+		IAI47_08295	0.54	+1.7
1,755,310	+		IAI47_08295	0.54	+0.6
1,755,310	+		IAI47_08295	0.54	+0.7
1,755,310	+		IAI47_08295	0.54	+1.0
1,755,310	+		IAI47_08295	0.54	+0.3
1,755,310	+		IAI47_08295	0.54	+0.1
1,755,310	+		IAI47_08295	0.54	+0.8
1,755,310	+		IAI47_08295	0.54	+0.1
1,755,311	-		IAI47_08295	0.54	+1.8
1,755,311	-		IAI47_08295	0.54	+0.8
1,755,311	-		IAI47_08295	0.54	+1.2
1,755,311	-		IAI47_08295	0.54	+0.7
1,755,311	-		IAI47_08295	0.54	-0.3
1,755,311	-		IAI47_08295	0.54	+0.0
1,755,311	-		IAI47_08295	0.54	+1.3
1,755,311	-		IAI47_08295	0.54	+0.7
1,755,311	-		IAI47_08295	0.54	+0.1
1,755,311	-		IAI47_08295	0.54	+0.7
1,755,333	+		IAI47_08295	0.57	+0.9
1,755,334	-		IAI47_08295	0.57	+0.3
1,755,334	-		IAI47_08295	0.57	+1.8
1,755,347	-		IAI47_08295	0.58	+1.7
1,755,382	+		IAI47_08295	0.62	+1.3
1,755,382	+		IAI47_08295	0.62	+1.3
1,755,383	-		IAI47_08295	0.62	+1.2
1,755,383	-		IAI47_08295	0.62	-0.1
1,755,383	-		IAI47_08295	0.62	+0.7
1,755,398	+		IAI47_08295	0.64	+2.3
1,755,412	+		IAI47_08295	0.65	+0.7
1,755,419	+		IAI47_08295	0.66	+2.7
1,755,420	-		IAI47_08295	0.66	+1.4
1,755,420	-		IAI47_08295	0.66	+0.8
1,755,420	-		IAI47_08295	0.66	+1.5
1,755,500	-		IAI47_08295	0.75	-0.7
1,755,505	-		IAI47_08295	0.75	+1.1
1,755,513	+		IAI47_08295	0.76	+1.4
1,755,577	+		IAI47_08295	0.83	+0.8
1,755,578	-		IAI47_08295	0.83	-0.3
1,755,712	+				+2.0
1,755,712	+				+0.3
1,755,712	+				+1.7
1,755,713	-				+1.3
1,755,713	-				-0.9
1,755,713	-				-0.7
1,755,750	+				+0.6
1,755,751	-				+0.3
1,755,751	-				+0.3
1,755,769	+				+0.0
1,755,800	+				+0.9
1,755,800	+				+1.3
1,755,800	+				-0.8
1,755,800	+				+2.3
1,755,800	+				-0.8
1,755,800	+				+2.2
1,755,800	+				+0.1
1,755,800	+				+0.5
1,755,800	+				+0.3
1,755,800	+				-0.1
1,755,801	-				-0.4
1,755,801	-				-0.3
1,755,801	-				+2.8
1,755,803	+				-0.2
1,755,804	-				-0.6
1,755,864	+				+0.1
1,755,865	-				+0.3
1,755,865	-				-0.3
1,755,865	-				+0.3
1,755,893	+				-2.3
1,755,893	+				+0.5
1,755,921	+				+0.3
1,755,921	+				+0.1
1,755,921	+				-0.3
1,755,945	+				+0.9
1,755,945	+				-0.3
1,755,946	-				+0.3
1,755,946	-				+0.8
1,755,946	-				+0.6
1,756,032	+		IAI47_08300	0.14	+0.1
1,756,032	+		IAI47_08300	0.14	-0.3
1,756,032	+		IAI47_08300	0.14	+0.1
1,756,032	+		IAI47_08300	0.14	+0.5
1,756,033	-		IAI47_08300	0.14	-0.1
1,756,035	+		IAI47_08300	0.14	+0.0
1,756,035	+		IAI47_08300	0.14	-0.0
1,756,035	+		IAI47_08300	0.14	+0.2
1,756,035	+		IAI47_08300	0.14	+1.8
1,756,035	+		IAI47_08300	0.14	-1.5
1,756,035	+		IAI47_08300	0.14	+0.3
1,756,036	-		IAI47_08300	0.14	-0.7
1,756,036	-		IAI47_08300	0.14	-0.1
1,756,036	-		IAI47_08300	0.14	+0.8
1,756,057	+		IAI47_08300	0.15	+1.0
1,756,057	+		IAI47_08300	0.15	+0.3
1,756,057	+		IAI47_08300	0.15	-0.5
1,756,058	-		IAI47_08300	0.15	+0.7
1,756,059	+		IAI47_08300	0.16	+0.3
1,756,059	+		IAI47_08300	0.16	-1.3
1,756,096	+		IAI47_08300	0.17	+2.1
1,756,096	+		IAI47_08300	0.17	+0.7
1,756,096	+		IAI47_08300	0.17	-0.0
1,756,096	+		IAI47_08300	0.17	+0.4
1,756,096	+		IAI47_08300	0.17	-0.0
1,756,096	+		IAI47_08300	0.17	+0.7
1,756,097	-		IAI47_08300	0.17	-0.1
1,756,097	-		IAI47_08300	0.17	-0.8
1,756,097	-		IAI47_08300	0.17	-0.3
1,756,097	-		IAI47_08300	0.17	+0.3
1,756,097	-		IAI47_08300	0.17	-1.3
1,756,097	-		IAI47_08300	0.17	-1.7
1,756,098	+		IAI47_08300	0.17	+2.0
1,756,098	+		IAI47_08300	0.17	-0.7
1,756,099	-		IAI47_08300	0.18	+0.0
1,756,128	-		IAI47_08300	0.19	-1.2
1,756,211	+		IAI47_08300	0.23	+0.9
1,756,212	-		IAI47_08300	0.23	+0.0
1,756,212	-		IAI47_08300	0.23	-2.0
1,756,212	-		IAI47_08300	0.23	+0.7
1,756,212	-		IAI47_08300	0.23	-0.3
1,756,267	-		IAI47_08300	0.26	+2.6
1,756,267	-		IAI47_08300	0.26	-2.8
1,756,267	-		IAI47_08300	0.26	+0.5
1,756,336	-		IAI47_08300	0.30	+0.3
1,756,515	+		IAI47_08300	0.39	+0.4
1,756,515	+		IAI47_08300	0.39	-0.7
1,756,743	+		IAI47_08300	0.50	+0.1
1,756,743	+		IAI47_08300	0.50	+1.8
1,756,743	+		IAI47_08300	0.50	+0.1
1,756,744	-		IAI47_08300	0.50	-2.5
1,756,744	-		IAI47_08300	0.50	-0.1
1,756,744	-		IAI47_08300	0.50	-0.9
1,756,744	-		IAI47_08300	0.50	-0.3
1,756,759	+		IAI47_08300	0.51	+1.7
1,756,759	+		IAI47_08300	0.51	+0.3
1,756,759	+		IAI47_08300	0.51	-1.0
1,756,759	+		IAI47_08300	0.51	-1.1
1,756,760	-		IAI47_08300	0.51	+2.3
1,756,760	-		IAI47_08300	0.51	+0.6
1,756,760	-		IAI47_08300	0.51	-0.4
1,756,760	-		IAI47_08300	0.51	+1.3
1,756,760	-		IAI47_08300	0.51	+0.5
1,756,857	+		IAI47_08300	0.56	+1.3
1,756,858	-		IAI47_08300	0.56	+1.7
1,756,889	+		IAI47_08300	0.57	-0.8
1,756,890	-		IAI47_08300	0.57	+2.8
1,756,905	+		IAI47_08300	0.58	-0.3
1,756,906	-		IAI47_08300	0.58	+0.3
1,756,924	-		IAI47_08300	0.59	-1.3
1,756,957	-		IAI47_08300	0.61	-0.9
1,757,007	+		IAI47_08300	0.63	-0.1
1,757,008	-		IAI47_08300	0.63	-1.5
1,757,055	+		IAI47_08300	0.66	-0.7
1,757,056	-		IAI47_08300	0.66	+0.0
1,757,056	-		IAI47_08300	0.66	+0.3
1,757,148	+		IAI47_08300	0.70	-0.7
1,757,149	-		IAI47_08300	0.70	+0.4
1,757,149	-		IAI47_08300	0.70	+0.0
1,757,211	+		IAI47_08300	0.74	+0.9
1,757,212	-		IAI47_08300	0.74	-0.7
1,757,274	+		IAI47_08300	0.77	-0.1
1,757,274	+		IAI47_08300	0.77	+0.3
1,757,278	-		IAI47_08300	0.77	+0.9
1,757,340	+		IAI47_08300	0.80	-0.7
1,757,420	+		IAI47_08300	0.84	+0.9
1,757,420	+		IAI47_08300	0.84	-0.5
1,757,440	+		IAI47_08300	0.85	+0.3
1,757,440	+		IAI47_08300	0.85	-0.3
1,757,440	+		IAI47_08300	0.85	+0.0
1,757,441	-		IAI47_08300	0.85	-0.2
1,757,441	-		IAI47_08300	0.85	-0.5
1,757,441	-		IAI47_08300	0.85	+1.2
1,757,441	-		IAI47_08300	0.85	-0.6
1,757,487	+		IAI47_08300	0.88	-0.7
1,757,487	+		IAI47_08300	0.88	-0.7
1,757,543	-				-1.0
1,757,543	-				-0.1
1,757,604	+				+0.6
1,757,604	+				-0.7
1,757,604	+				+1.3
1,757,605	-				-1.0
1,757,608	+				-1.3
1,757,661	-				-0.5
1,757,661	-				+0.0
1,757,698	-				-1.3
1,757,698	-				-0.1
1,757,739	-				+0.1
1,757,750	-				-0.5
1,757,753	+				-0.4
1,757,753	+				+2.9
1,757,753	+				-1.8
1,757,753	+				+1.3
1,757,754	-				+0.1
1,757,754	-				+0.8
1,757,754	-				+0.7
1,757,841	+		IAI47_08305	0.17	+0.7
1,757,841	+		IAI47_08305	0.17	+0.2
1,757,841	+		IAI47_08305	0.17	-0.8
1,757,851	-		IAI47_08305	0.19	-1.4
1,757,890	+		IAI47_08305	0.27	+0.4
1,757,890	+		IAI47_08305	0.27	-0.9
1,757,890	+		IAI47_08305	0.27	-0.7
1,757,891	-		IAI47_08305	0.27	+0.5
1,757,897	+		IAI47_08305	0.28	-0.5
1,757,897	+		IAI47_08305	0.28	-2.0
1,757,897	+		IAI47_08305	0.28	-2.0
1,757,897	+		IAI47_08305	0.28	+1.3
1,757,897	+		IAI47_08305	0.28	-0.3
1,757,898	-		IAI47_08305	0.28	+1.2
1,757,898	-		IAI47_08305	0.28	+1.6
1,757,898	-		IAI47_08305	0.28	-0.9
1,757,898	-		IAI47_08305	0.28	+0.3
1,757,898	-		IAI47_08305	0.28	-0.3
1,757,898	-		IAI47_08305	0.28	-1.1
1,757,898	-		IAI47_08305	0.28	-0.3
1,757,898	-		IAI47_08305	0.28	+0.6
1,757,934	-		IAI47_08305	0.36	+0.0
1,758,000	+		IAI47_08305	0.49	-1.3
1,758,000	+		IAI47_08305	0.49	+0.6
1,758,000	+		IAI47_08305	0.49	-0.8
1,758,001	-		IAI47_08305	0.49	-1.2
1,758,001	-		IAI47_08305	0.49	-1.7
1,758,053	+		IAI47_08305	0.59	+1.3
1,758,053	+		IAI47_08305	0.59	-0.1
1,758,054	-		IAI47_08305	0.60	-0.7
1,758,054	-		IAI47_08305	0.60	+0.3
1,758,144	+		IAI47_08305	0.78	-0.2
1,758,144	+		IAI47_08305	0.78	+0.7
1,758,236	+				+0.5
1,758,236	+				+0.6
1,758,236	+				+0.3
1,758,253	-				-0.7
1,758,329	-				+0.0
1,758,391	+				-2.5
1,758,391	+				+0.1
1,758,392	-				+2.2
1,758,411	-				+0.9
1,758,411	-				-0.5
1,758,455	+				+0.3
1,758,455	+				+0.3
1,758,455	+				+0.7
1,758,455	+				+0.3
1,758,455	+				-0.4
1,758,455	+				+1.0
1,758,455	+				-0.9
1,758,455	+				-1.1
1,758,456	-				-1.2
1,758,458	+				+0.9
1,758,458	+				-0.3
1,758,458	+				+0.3
1,758,459	-				-0.7
1,758,459	-				+0.3
1,758,459	-				+0.1
1,758,459	-				-1.3
1,758,503	-				+0.3
1,758,512	+				+0.1
1,758,512	+				+1.7
1,758,512	+				-0.5
1,758,513	-				-1.1
1,758,513	-				+0.7
1,758,513	-				-0.3
1,758,522	+				+1.6
1,758,562	-				-0.0
1,758,562	-				+1.0
1,758,562	-				+1.1
1,758,572	+				+0.5
1,758,572	+				+0.3
1,758,583	+		IAI47_08310	0.10	+0.3
1,758,583	+		IAI47_08310	0.10	-0.7
1,758,583	+		IAI47_08310	0.10	-1.0
1,758,583	+		IAI47_08310	0.10	+0.7
1,758,583	+		IAI47_08310	0.10	+0.1
1,758,583	+		IAI47_08310	0.10	+0.4
1,758,583	+		IAI47_08310	0.10	+0.5
1,758,583	+		IAI47_08310	0.10	+0.0
1,758,583	+		IAI47_08310	0.10	-1.2
1,758,583	+		IAI47_08310	0.10	+2.1
1,758,583	+		IAI47_08310	0.10	-1.3
1,758,583	+		IAI47_08310	0.10	+1.1
1,758,583	+		IAI47_08310	0.10	+0.0
1,758,583	+		IAI47_08310	0.10	+1.1
1,758,583	+		IAI47_08310	0.10	+0.9
1,758,583	+		IAI47_08310	0.10	-0.9
1,758,584	-		IAI47_08310	0.10	+1.7
1,758,584	-		IAI47_08310	0.10	+0.1
1,758,584	-		IAI47_08310	0.10	+2.4
1,758,584	-		IAI47_08310	0.10	-1.5
1,758,584	-		IAI47_08310	0.10	+0.3
1,758,584	-		IAI47_08310	0.10	+1.6
1,758,584	-		IAI47_08310	0.10	-0.8
1,758,584	-		IAI47_08310	0.10	-0.5
1,758,584	-		IAI47_08310	0.10	-0.1
1,758,584	-		IAI47_08310	0.10	-1.3
1,758,584	-		IAI47_08310	0.10	+0.3
1,758,584	-		IAI47_08310	0.10	+1.2
1,758,584	-		IAI47_08310	0.10	+0.5
1,758,584	-		IAI47_08310	0.10	-1.0
1,758,585	+		IAI47_08310	0.10	-1.3
1,758,585	+		IAI47_08310	0.10	-1.5
1,758,585	+		IAI47_08310	0.10	-2.7
1,758,585	+		IAI47_08310	0.10	+0.8
1,758,585	+		IAI47_08310	0.10	+0.8
1,758,585	+		IAI47_08310	0.10	+0.3
1,758,585	+		IAI47_08310	0.10	-0.5
1,758,586	-		IAI47_08310	0.10	-1.0
1,758,586	-		IAI47_08310	0.10	+0.5
1,758,586	-		IAI47_08310	0.10	+1.0
1,758,594	+		IAI47_08310	0.11	+0.7
1,758,608	+		IAI47_08310	0.12	-0.5
1,758,609	-		IAI47_08310	0.12	+2.0
1,758,609	-		IAI47_08310	0.12	-0.3
1,758,609	-		IAI47_08310	0.12	-1.3
1,758,609	-		IAI47_08310	0.12	+0.0
1,758,611	+		IAI47_08310	0.12	+1.7
1,758,612	-		IAI47_08310	0.12	+0.7
1,758,612	-		IAI47_08310	0.12	-0.5
1,758,612	-		IAI47_08310	0.12	-1.1
1,758,645	+		IAI47_08310	0.14	-0.1
1,758,646	-		IAI47_08310	0.14	-0.1
1,758,646	-		IAI47_08310	0.14	+1.1
1,758,684	+		IAI47_08310	0.16	-0.3
1,758,724	+		IAI47_08310	0.18	+0.7
1,758,724	+		IAI47_08310	0.18	-2.1
1,758,725	-		IAI47_08310	0.19	-0.7
1,758,725	-		IAI47_08310	0.19	-1.3
1,758,726	+		IAI47_08310	0.19	+0.9
1,758,726	+		IAI47_08310	0.19	-0.3
1,758,726	+		IAI47_08310	0.19	+0.3
1,758,727	-		IAI47_08310	0.19	-1.5
1,758,727	-		IAI47_08310	0.19	-1.5
1,758,727	-		IAI47_08310	0.19	+1.3
1,758,727	-		IAI47_08310	0.19	+1.1
1,758,727	-		IAI47_08310	0.19	-0.3