Strain Fitness in Pantoea sp. MT58 around IAI47_06385

Experiment: Ying_all64 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 3
1,297,890	-		IAI47_06380	0.35	-0.6
1,297,952	+		IAI47_06380	0.40	-1.6
1,297,953	-		IAI47_06380	0.40	-1.2
1,297,953	-		IAI47_06380	0.40	-2.2
1,298,075	-		IAI47_06380	0.49	-0.6
1,298,138	+		IAI47_06380	0.54	-0.6
1,298,569	+		IAI47_06380	0.86	-1.6
1,298,705	+				+0.3
1,298,705	+				+0.0
1,298,705	+				+0.4
1,298,705	+				+0.0
1,298,706	-				-1.2
1,298,757	+				-0.0
1,298,757	+				+1.6
1,298,823	+				-0.2
1,298,823	+				-0.8
1,298,823	+				-2.0
1,298,823	+				-1.6
1,298,823	+				-1.2
1,298,823	+				+1.4
1,298,824	-				-0.6
1,298,824	-				-1.2
1,298,830	+				-1.6
1,298,852	+				-1.4
1,298,869	-				-2.2
1,298,869	-				+2.0
1,298,875	-				-3.0
1,298,885	+				-1.6
1,299,224	+		IAI47_06385	0.13	-1.6
1,299,225	-		IAI47_06385	0.13	-1.2
1,299,321	+				+0.4
1,299,350	-		IAI47_06385	0.18	-1.4
1,299,385	+		IAI47_06385	0.19	+0.0
1,299,406	+		IAI47_06385	0.20	-2.8
1,299,406	+		IAI47_06385	0.20	-1.9
1,299,407	-		IAI47_06385	0.20	-2.2
1,299,493	-		IAI47_06385	0.23	-1.6
1,299,573	+		IAI47_06385	0.26	-1.2
1,299,574	-				-1.6
1,299,638	+		IAI47_06385	0.28	-0.6
1,299,638	+		IAI47_06385	0.28	+0.4
1,299,639	-		IAI47_06385	0.28	+0.4
1,299,639	-		IAI47_06385	0.28	-1.6
1,299,646	+		IAI47_06385	0.29	+2.0
1,299,682	+		IAI47_06385	0.30	-1.2
1,299,741	+		IAI47_06385	0.32	-2.2
1,299,840	+		IAI47_06385	0.36	-2.9
1,299,841	-		IAI47_06385	0.36	-0.6
1,299,889	-		IAI47_06385	0.37	-1.2
1,299,952	+		IAI47_06385	0.40	-1.2
1,299,952	+		IAI47_06385	0.40	+0.4
1,299,952	+		IAI47_06385	0.40	-1.9
1,299,955	-		IAI47_06385	0.40	-1.6
1,300,077	+				+0.4
1,300,122	+		IAI47_06385	0.46	-1.9
1,300,208	-		IAI47_06385	0.49	-1.2
1,300,781	-		IAI47_06385	0.70	+0.4
1,300,988	+		IAI47_06385	0.78	-2.8
1,300,989	-		IAI47_06385	0.78	-1.6
1,300,993	-		IAI47_06385	0.78	+0.4
1,300,993	-		IAI47_06385	0.78	-2.4
1,301,216	+		IAI47_06385	0.86	-1.2
1,301,559	+				+2.5
1,301,795	+		IAI47_06390	0.21	+1.4
1,301,819	+		IAI47_06390	0.24	-1.6
1,301,820	-		IAI47_06390	0.24	-1.6
1,301,831	+		IAI47_06390	0.25	-1.4
1,301,885	+		IAI47_06390	0.30	-1.2
1,301,970	+		IAI47_06390	0.39	-2.9
1,302,054	+		IAI47_06390	0.48	-1.2
1,302,188	+				-0.6
1,302,313	-		IAI47_06390	0.74	-1.9
1,302,313	-		IAI47_06390	0.74	-1.9
1,302,422	+		IAI47_06390	0.85	-1.2
1,302,423	-		IAI47_06390	0.85	-0.6
1,302,423	-		IAI47_06390	0.85	-2.8
1,302,592	+				-0.6