Strain Fitness in Pantoea sp. MT58 around IAI47_05250

Experiment: Ying_all64 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 3
1,108,764	-				+2.1
1,108,764	-				+0.4
1,108,764	-				+0.1
1,108,764	-				+0.8
1,108,788	+				-0.9
1,108,788	+				-0.9
1,108,789	-				+0.1
1,108,789	-				-0.7
1,108,870	+		IAI47_05245	0.18	-0.8
1,108,870	+		IAI47_05245	0.18	+0.4
1,108,870	+		IAI47_05245	0.18	-0.6
1,108,870	+		IAI47_05245	0.18	+1.9
1,108,870	+		IAI47_05245	0.18	-2.1
1,108,871	-		IAI47_05245	0.18	-0.6
1,108,871	-		IAI47_05245	0.18	+0.4
1,108,871	-		IAI47_05245	0.18	+0.9
1,108,874	+		IAI47_05245	0.19	+1.6
1,108,875	-		IAI47_05245	0.19	+0.7
1,108,875	-		IAI47_05245	0.19	-1.5
1,108,875	-		IAI47_05245	0.19	+0.4
1,108,912	-		IAI47_05245	0.23	+0.3
1,108,912	-		IAI47_05245	0.23	+0.6
1,108,912	-		IAI47_05245	0.23	+0.3
1,108,912	-		IAI47_05245	0.23	+2.0
1,108,956	+		IAI47_05245	0.29	-1.2
1,109,020	-		IAI47_05245	0.36	+2.0
1,109,119	+		IAI47_05245	0.48	+1.6
1,109,119	+		IAI47_05245	0.48	-0.9
1,109,119	+		IAI47_05245	0.48	+1.0
1,109,119	+		IAI47_05245	0.48	-0.9
1,109,119	+		IAI47_05245	0.48	+0.8
1,109,120	-		IAI47_05245	0.48	-1.9
1,109,120	-		IAI47_05245	0.48	-0.4
1,109,120	-		IAI47_05245	0.48	+0.9
1,109,120	-		IAI47_05245	0.48	-0.1
1,109,120	-		IAI47_05245	0.48	-0.6
1,109,120	-		IAI47_05245	0.48	-0.6
1,109,134	+		IAI47_05245	0.50	-0.4
1,109,134	+		IAI47_05245	0.50	-0.6
1,109,135	-		IAI47_05245	0.50	+0.8
1,109,225	+		IAI47_05245	0.61	-1.0
1,109,226	-		IAI47_05245	0.61	+0.7
1,109,290	+		IAI47_05245	0.69	+1.8
1,109,290	+		IAI47_05245	0.69	-0.9
1,109,290	+		IAI47_05245	0.69	+2.5
1,109,291	-		IAI47_05245	0.69	-1.2
1,109,372	-		IAI47_05245	0.79	-1.2
1,109,372	-		IAI47_05245	0.79	+1.7
1,109,420	+		IAI47_05245	0.84	-0.7
1,109,440	-		IAI47_05245	0.87	+1.0
1,109,443	+		IAI47_05245	0.87	-0.6
1,109,444	-		IAI47_05245	0.87	-0.8
1,109,523	+				-0.2
1,109,523	+				+0.0
1,109,524	-				+0.1
1,109,524	-				-0.4
1,109,524	-				+0.7
1,109,539	+				-0.4
1,109,548	-				+1.5
1,109,557	+				+0.8
1,109,557	+				+1.2
1,109,557	+				-1.6
1,109,557	+				+0.2
1,109,557	+				+0.2
1,109,557	+				-1.2
1,109,557	+				-0.2
1,109,558	-				-0.3
1,109,565	+				-2.2
1,109,568	+				-0.6
1,109,569	-				-1.2
1,109,578	-				+0.3
1,109,590	-				+0.3
1,109,590	-				-0.2
1,109,624	+				-0.5
1,109,624	+				+1.3
1,109,625	-				+0.4
1,109,625	-				+1.7
1,109,625	-				-0.6
1,109,656	-				+0.2
1,109,714	+				-1.3
1,109,714	+				+0.4
1,109,714	+				-0.4
1,109,714	+				+0.4
1,109,715	-				+0.4
1,109,715	-				+2.0
1,109,715	-				-1.3
1,109,715	-				-1.6
1,109,715	-				-0.5
1,109,715	-				+1.7
1,109,781	+				-0.5
1,109,781	+				-0.4
1,109,782	-				-1.9
1,109,782	-				-1.6
1,109,782	-				-0.2
1,109,782	-				-0.0
1,109,782	-				+0.6
1,109,803	+				-0.3
1,109,803	+				-0.0
1,109,804	-				-0.8
1,109,836	-				-1.2
1,109,836	-				-0.9
1,109,867	-		IAI47_05250	0.10	-0.7
1,109,867	-		IAI47_05250	0.10	-0.8
1,109,867	-		IAI47_05250	0.10	+0.6
1,109,867	-		IAI47_05250	0.10	-0.7
1,109,867	-		IAI47_05250	0.10	+1.7
1,109,929	+		IAI47_05250	0.14	-1.9
1,109,929	+		IAI47_05250	0.14	+0.0
1,109,929	+		IAI47_05250	0.14	-1.2
1,109,929	+		IAI47_05250	0.14	-0.2
1,109,930	-		IAI47_05250	0.14	-1.0
1,109,930	-		IAI47_05250	0.14	-0.6
1,109,958	+		IAI47_05250	0.16	+0.0
1,109,958	+		IAI47_05250	0.16	-1.5
1,109,958	+		IAI47_05250	0.16	+0.9
1,109,959	-		IAI47_05250	0.16	-1.4
1,109,959	-		IAI47_05250	0.16	+0.2
1,109,962	-		IAI47_05250	0.16	-1.0
1,110,083	+		IAI47_05250	0.24	-0.2
1,110,084	-		IAI47_05250	0.24	-0.2
1,110,084	-		IAI47_05250	0.24	+1.0
1,110,084	-		IAI47_05250	0.24	-0.6
1,110,084	-		IAI47_05250	0.24	+0.8
1,110,090	+		IAI47_05250	0.24	+0.4
1,110,091	-		IAI47_05250	0.24	-0.8
1,110,150	+		IAI47_05250	0.28	+1.0
1,110,150	+		IAI47_05250	0.28	-0.1
1,110,174	+		IAI47_05250	0.30	-1.6
1,110,174	+		IAI47_05250	0.30	+1.7
1,110,175	-		IAI47_05250	0.30	+0.1
1,110,223	+		IAI47_05250	0.33	+1.6
1,110,223	+		IAI47_05250	0.33	+0.8
1,110,224	-		IAI47_05250	0.33	-2.8
1,110,224	-		IAI47_05250	0.33	-0.2
1,110,233	-		IAI47_05250	0.33	+1.0
1,110,250	+		IAI47_05250	0.34	+0.8
1,110,250	+		IAI47_05250	0.34	+0.5
1,110,251	-		IAI47_05250	0.35	-0.0
1,110,251	-		IAI47_05250	0.35	-0.3
1,110,251	-		IAI47_05250	0.35	-1.0
1,110,251	-		IAI47_05250	0.35	-0.1
1,110,251	-		IAI47_05250	0.35	-0.6
1,110,251	-		IAI47_05250	0.35	-0.1
1,110,269	+		IAI47_05250	0.36	-0.6
1,110,269	+		IAI47_05250	0.36	+0.0
1,110,269	+		IAI47_05250	0.36	+0.0
1,110,270	-		IAI47_05250	0.36	-0.9
1,110,270	-		IAI47_05250	0.36	+0.6
1,110,270	-		IAI47_05250	0.36	-0.5
1,110,319	+		IAI47_05250	0.39	-2.2
1,110,319	+		IAI47_05250	0.39	-1.0
1,110,319	+		IAI47_05250	0.39	-2.4
1,110,320	-		IAI47_05250	0.39	-0.7
1,110,320	-		IAI47_05250	0.39	-0.4
1,110,320	-		IAI47_05250	0.39	-1.3
1,110,320	-		IAI47_05250	0.39	-0.0
1,110,330	+		IAI47_05250	0.40	-0.6
1,110,349	+		IAI47_05250	0.41	-2.4
1,110,349	+		IAI47_05250	0.41	+3.0
1,110,350	-		IAI47_05250	0.41	-0.5
1,110,350	-		IAI47_05250	0.41	+0.2
1,110,350	-		IAI47_05250	0.41	-0.4
1,110,447	+		IAI47_05250	0.47	-0.9
1,110,503	+		IAI47_05250	0.51	-0.2
1,110,520	-		IAI47_05250	0.52	-0.2
1,110,520	-		IAI47_05250	0.52	+0.4
1,110,608	+		IAI47_05250	0.57	-0.9
1,110,608	+		IAI47_05250	0.57	-0.6
1,110,608	+		IAI47_05250	0.57	+0.1
1,110,609	-		IAI47_05250	0.57	-1.9
1,110,609	-		IAI47_05250	0.57	+0.4
1,110,609	-		IAI47_05250	0.57	+0.4
1,110,683	+		IAI47_05250	0.62	-0.3
1,110,715	+		IAI47_05250	0.64	-1.5
1,110,715	+		IAI47_05250	0.64	-0.6
1,110,789	+		IAI47_05250	0.69	+0.4
1,110,790	-		IAI47_05250	0.69	+1.1
1,110,790	-		IAI47_05250	0.69	-1.0
1,110,824	+		IAI47_05250	0.71	-0.8
1,110,824	+		IAI47_05250	0.71	-0.2
1,110,825	-		IAI47_05250	0.71	-0.6
1,110,859	+		IAI47_05250	0.73	-0.1
1,110,859	+		IAI47_05250	0.73	+0.8
1,110,859	+		IAI47_05250	0.73	+0.1
1,110,860	-		IAI47_05250	0.73	+0.6
1,110,860	-		IAI47_05250	0.73	+0.1
1,110,860	-		IAI47_05250	0.73	+0.4
1,110,862	+		IAI47_05250	0.74	-1.8
1,110,862	+		IAI47_05250	0.74	-0.0
1,110,863	-		IAI47_05250	0.74	+0.2
1,110,863	-		IAI47_05250	0.74	-1.4
1,110,978	+		IAI47_05250	0.81	-0.5
1,110,978	+		IAI47_05250	0.81	-0.7
1,110,978	+		IAI47_05250	0.81	-0.5
1,110,978	+		IAI47_05250	0.81	+0.0
1,110,978	+		IAI47_05250	0.81	-0.1
1,110,979	-		IAI47_05250	0.81	+2.0
1,110,979	-		IAI47_05250	0.81	+1.6
1,110,979	-		IAI47_05250	0.81	+2.0
1,111,046	+		IAI47_05250	0.85	-2.8
1,111,046	+		IAI47_05250	0.85	-0.3
1,111,046	+		IAI47_05250	0.85	-0.6
1,111,046	+		IAI47_05250	0.85	-1.6
1,111,046	+		IAI47_05250	0.85	-0.1
1,111,046	+		IAI47_05250	0.85	+0.8
1,111,047	-		IAI47_05250	0.85	-0.6
1,111,094	+		IAI47_05250	0.88	-0.4
1,111,140	+				-0.2
1,111,140	+				-0.7
1,111,140	+				-1.4
1,111,140	+				-0.9
1,111,141	-				+1.7
1,111,141	-				-0.6
1,111,141	-				+2.9
1,111,141	-				-1.6
1,111,141	-				+0.4
1,111,149	+				+0.1
1,111,149	+				-1.2
1,111,150	-				+0.2
1,111,150	-				-0.5
1,111,150	-				+0.7
1,111,225	+				+0.4
1,111,225	+				+0.7
1,111,225	+				+2.4
1,111,226	-				+0.4
1,111,226	-				-0.5
1,111,226	-				-1.0
1,111,248	+				-1.0
1,111,248	+				+0.8
1,111,248	+				-1.5
1,111,248	+				-0.2
1,111,248	+				+0.4
1,111,249	-				-0.8
1,111,249	-				-1.3
1,111,249	-				-1.2
1,111,364	+				+1.5
1,111,364	+				+1.8
1,111,365	-				+0.7
1,111,365	-				-0.8
1,111,365	-				-0.2
1,111,385	+				+0.5
1,111,385	+				+1.5
1,111,386	-				+1.9
1,111,386	-				-1.2
1,111,386	-				+0.4
1,111,386	-				-1.0
1,111,386	-				+0.4
1,111,419	+		IAI47_05255	0.11	-0.6
1,111,419	+		IAI47_05255	0.11	-0.8
1,111,420	-		IAI47_05255	0.11	+0.3
1,111,420	-		IAI47_05255	0.11	+2.6
1,111,420	-		IAI47_05255	0.11	-0.0
1,111,425	+		IAI47_05255	0.12	-1.2
1,111,426	-		IAI47_05255	0.12	+2.4
1,111,426	-		IAI47_05255	0.12	+0.0
1,111,426	-		IAI47_05255	0.12	+1.4
1,111,426	-		IAI47_05255	0.12	+0.5
1,111,426	-		IAI47_05255	0.12	-0.1
1,111,482	+		IAI47_05255	0.24	-0.2
1,111,482	+		IAI47_05255	0.24	+1.4
1,111,483	-		IAI47_05255	0.24	+0.2
1,111,490	+		IAI47_05255	0.26	+0.0
1,111,490	+		IAI47_05255	0.26	-0.6
1,111,490	+		IAI47_05255	0.26	+0.0
1,111,503	+		IAI47_05255	0.29	+0.6
1,111,504	-		IAI47_05255	0.29	+0.1
1,111,569	+		IAI47_05255	0.43	+1.0
1,111,569	+		IAI47_05255	0.43	+0.5
1,111,569	+		IAI47_05255	0.43	-0.1
1,111,725	-		IAI47_05255	0.76	-0.2
1,111,730	+		IAI47_05255	0.77	-0.6
1,111,730	+		IAI47_05255	0.77	+3.0
1,111,730	+		IAI47_05255	0.77	+0.7
1,111,731	-		IAI47_05255	0.77	-0.6
1,111,731	-		IAI47_05255	0.77	+0.4
1,111,797	+				+0.2
1,111,798	-				-1.4
1,111,812	+				-0.2
1,111,813	-				+0.4
1,111,813	-				+0.3
1,111,813	-				+0.9
1,111,855	+				-0.3
1,111,871	-				+0.8
1,111,873	+				-0.8
1,111,873	+				-1.6
1,111,873	+				+1.4
1,111,873	+				+0.4
1,111,873	+				+0.3
1,111,873	+				-0.6
1,111,873	+				+1.3
1,111,873	+				+1.1
1,111,874	-				-2.1
1,111,874	-				-0.0
1,111,874	-				-1.2
1,111,874	-				+0.2
1,111,908	+				-0.5
1,111,908	+				-2.1
1,111,909	-				+0.0
1,111,933	+				+1.0
1,111,934	-				-0.6
1,111,934	-				-1.2
1,111,934	-				+0.4
1,111,934	-				+1.1
1,111,934	-				-1.1
1,111,934	-				-1.2
1,111,955	+				+0.2
1,111,955	+				-0.0
1,111,955	+				-0.1
1,111,956	-				+0.3
1,111,956	-				+2.6
1,111,956	-				-0.4
1,111,956	-				+0.4
1,111,968	+				-0.6
1,111,968	+				-0.7
1,111,968	+				+1.2
1,111,969	-				-0.2
1,111,969	-				+1.6
1,111,969	-				+0.4
1,111,969	-				+0.4
1,111,969	-				+0.4
1,111,980	-				-1.2
1,111,993	+				+1.4
1,112,041	+				+0.9
1,112,041	+				+0.4
1,112,041	+				+2.6
1,112,041	+				-1.2
1,112,041	+				+1.7
1,112,042	-				-1.4
1,112,042	-				-0.4
1,112,049	+				+1.0
1,112,049	+				-0.7
1,112,050	-				-0.4
1,112,050	-				-0.0
1,112,050	-				+1.8
1,112,085	-		IAI47_05260	0.13	-0.2
1,112,087	+		IAI47_05260	0.14	-1.5
1,112,087	+		IAI47_05260	0.14	-0.4
1,112,088	-		IAI47_05260	0.14	-1.1
1,112,088	-		IAI47_05260	0.14	+0.8
1,112,088	-		IAI47_05260	0.14	+1.4
1,112,088	-		IAI47_05260	0.14	-0.3
1,112,088	-		IAI47_05260	0.14	+0.3
1,112,147	+		IAI47_05260	0.22	-0.6
1,112,148	-		IAI47_05260	0.22	+0.1
1,112,149	+		IAI47_05260	0.23	-2.6
1,112,149	+		IAI47_05260	0.23	-2.6
1,112,149	+		IAI47_05260	0.23	-0.8
1,112,149	+		IAI47_05260	0.23	-2.4
1,112,149	+		IAI47_05260	0.23	-1.2
1,112,149	+		IAI47_05260	0.23	-0.0
1,112,149	+		IAI47_05260	0.23	-0.4
1,112,149	+		IAI47_05260	0.23	-0.6
1,112,149	+		IAI47_05260	0.23	+0.2
1,112,149	+		IAI47_05260	0.23	-0.3
1,112,149	+		IAI47_05260	0.23	+0.8
1,112,149	+		IAI47_05260	0.23	+1.0
1,112,150	-		IAI47_05260	0.23	+2.1
1,112,150	-		IAI47_05260	0.23	+0.9
1,112,150	-		IAI47_05260	0.23	-1.6
1,112,150	-		IAI47_05260	0.23	-1.8
1,112,150	-		IAI47_05260	0.23	-0.6
1,112,150	-		IAI47_05260	0.23	+0.4
1,112,150	-		IAI47_05260	0.23	+0.4
1,112,150	-		IAI47_05260	0.23	-1.0
1,112,222	+		IAI47_05260	0.33	+1.0
1,112,223	-		IAI47_05260	0.33	+2.4
1,112,223	-		IAI47_05260	0.33	+0.8
1,112,223	-		IAI47_05260	0.33	-0.2
1,112,228	+		IAI47_05260	0.34	+0.7
1,112,228	+		IAI47_05260	0.34	-0.2
1,112,229	-		IAI47_05260	0.34	-0.6
1,112,229	-		IAI47_05260	0.34	+0.1
1,112,229	-		IAI47_05260	0.34	+0.4
1,112,229	-		IAI47_05260	0.34	-1.4
1,112,229	-		IAI47_05260	0.34	-0.6
1,112,249	+		IAI47_05260	0.37	+0.8
1,112,249	+		IAI47_05260	0.37	-0.9
1,112,249	+		IAI47_05260	0.37	-1.0
1,112,250	-		IAI47_05260	0.37	-1.4
1,112,250	-		IAI47_05260	0.37	+3.2
1,112,250	-		IAI47_05260	0.37	-0.2
1,112,250	-		IAI47_05260	0.37	-0.9
1,112,252	+		IAI47_05260	0.37	+0.8
1,112,252	+		IAI47_05260	0.37	-0.6
1,112,252	+		IAI47_05260	0.37	+0.4
1,112,252	+		IAI47_05260	0.37	+0.3
1,112,252	+		IAI47_05260	0.37	+0.2
1,112,253	-		IAI47_05260	0.38	-0.6
1,112,253	-		IAI47_05260	0.38	+0.1
1,112,253	-		IAI47_05260	0.38	-3.1
1,112,253	-		IAI47_05260	0.38	-0.3
1,112,253	-		IAI47_05260	0.38	-0.0