Strain Fitness in Pantoea sp. MT58 around IAI47_05090

Experiment: Ying_all64 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 3
1,075,132	+		IAI47_05085	0.64	-0.8
1,075,132	+		IAI47_05085	0.64	-1.6
1,075,132	+		IAI47_05085	0.64	+0.2
1,075,132	+		IAI47_05085	0.64	+0.8
1,075,133	-		IAI47_05085	0.64	-0.6
1,075,186	+		IAI47_05085	0.66	+0.6
1,075,186	+		IAI47_05085	0.66	+0.4
1,075,187	-		IAI47_05085	0.66	-0.5
1,075,202	+		IAI47_05085	0.66	-0.5
1,075,203	-		IAI47_05085	0.67	+0.4
1,075,203	-		IAI47_05085	0.67	-1.4
1,075,203	-		IAI47_05085	0.67	-0.2
1,075,310	-		IAI47_05085	0.71	-1.2
1,075,331	+		IAI47_05085	0.72	-0.1
1,075,331	+		IAI47_05085	0.72	-1.1
1,075,332	-		IAI47_05085	0.72	+1.0
1,075,492	+		IAI47_05085	0.78	+1.4
1,075,499	-		IAI47_05085	0.79	+2.0
1,075,499	-		IAI47_05085	0.79	-1.5
1,075,544	-		IAI47_05085	0.80	+0.4
1,075,544	-		IAI47_05085	0.80	-0.6
1,075,574	+		IAI47_05085	0.82	-0.0
1,075,575	-		IAI47_05085	0.82	-0.2
1,075,575	-		IAI47_05085	0.82	+1.6
1,075,575	-		IAI47_05085	0.82	-0.5
1,075,575	-		IAI47_05085	0.82	-0.2
1,075,575	-		IAI47_05085	0.82	+0.8
1,075,575	-		IAI47_05085	0.82	+0.7
1,075,575	-		IAI47_05085	0.82	-0.4
1,075,575	-		IAI47_05085	0.82	-1.2
1,075,575	-		IAI47_05085	0.82	-1.1
1,075,585	+		IAI47_05085	0.82	-1.4
1,075,585	+		IAI47_05085	0.82	+1.5
1,075,585	+		IAI47_05085	0.82	-0.6
1,075,586	-		IAI47_05085	0.82	-1.2
1,075,586	-		IAI47_05085	0.82	-2.3
1,075,586	-		IAI47_05085	0.82	-1.6
1,075,597	+		IAI47_05085	0.83	+0.6
1,075,597	+		IAI47_05085	0.83	+0.7
1,075,597	+		IAI47_05085	0.83	-0.5
1,075,597	+		IAI47_05085	0.83	-0.0
1,075,597	+		IAI47_05085	0.83	-0.1
1,075,597	+		IAI47_05085	0.83	+0.1
1,075,597	+		IAI47_05085	0.83	-0.0
1,075,597	+		IAI47_05085	0.83	+0.9
1,075,598	-		IAI47_05085	0.83	-0.3
1,075,598	-		IAI47_05085	0.83	-1.5
1,075,598	-		IAI47_05085	0.83	-1.9
1,075,598	-		IAI47_05085	0.83	-0.2
1,075,598	-		IAI47_05085	0.83	+1.2
1,075,598	-		IAI47_05085	0.83	-1.6
1,075,639	+		IAI47_05085	0.84	-1.2
1,075,639	+		IAI47_05085	0.84	-0.2
1,075,639	+		IAI47_05085	0.84	+0.1
1,075,639	+		IAI47_05085	0.84	+3.3
1,075,639	+		IAI47_05085	0.84	-0.7
1,075,639	+		IAI47_05085	0.84	-1.2
1,075,639	+		IAI47_05085	0.84	-1.8
1,075,640	-		IAI47_05085	0.84	+0.4
1,075,724	-		IAI47_05085	0.88	+0.4
1,075,724	-		IAI47_05085	0.88	+1.4
1,075,726	+		IAI47_05085	0.88	-0.8
1,075,754	-		IAI47_05085	0.89	-0.9
1,075,771	+		IAI47_05085	0.90	-0.0
1,075,772	-		IAI47_05085	0.90	-1.5
1,075,797	+				+0.2
1,075,797	+				+1.2
1,075,798	-				-0.2
1,075,810	+				+0.3
1,075,820	+				-0.7
1,075,820	+				+0.7
1,075,820	+				+1.3
1,075,820	+				+0.1
1,075,821	-				-0.3
1,075,821	-				+1.2
1,075,821	-				-1.8
1,075,821	-				+0.9
1,075,821	-				+1.4
1,075,823	+				+0.4
1,075,823	+				-1.6
1,075,823	+				-0.2
1,075,823	+				-0.2
1,075,824	-				+0.4
1,075,853	-				+3.1
1,075,907	+				-0.6
1,075,907	+				-0.4
1,075,907	+				+1.8
1,075,907	+				+0.1
1,075,907	+				-0.1
1,075,907	+				-0.2
1,075,908	-				-0.6
1,075,908	-				-0.5
1,075,908	-				-2.4
1,075,908	-				+1.6
1,075,908	-				+0.4
1,075,927	+				-0.3
1,075,927	+				-0.5
1,075,927	+				-1.5
1,075,927	+				-1.8
1,075,928	-				+0.4
1,075,928	-				-0.7
1,075,933	+				+0.8
1,075,934	+				+2.7
1,075,934	+				-0.6
1,075,934	+				-0.4
1,075,934	+				+2.0
1,075,935	-				-0.9
1,075,935	-				+1.4
1,075,935	-				+0.5
1,075,935	-				-1.0
1,075,935	-				+0.8
1,075,935	-				-0.2
1,075,935	-				+0.1
1,075,935	-				+0.4
1,075,985	+				+1.7
1,075,985	+				+0.0
1,075,985	+				-0.8
1,075,986	-				-1.1
1,075,986	-				+0.2
1,075,986	-				-0.6
1,075,997	+				+0.8
1,076,018	+				-1.0
1,076,018	+				+0.8
1,076,019	-				+0.5
1,076,062	+				-1.2
1,076,155	+		IAI47_05090	0.28	-2.6
1,076,155	+		IAI47_05090	0.28	-2.1
1,076,155	+		IAI47_05090	0.28	-1.8
1,076,155	+		IAI47_05090	0.28	-1.6
1,076,155	+		IAI47_05090	0.28	-3.2
1,076,156	-		IAI47_05090	0.29	-1.4
1,076,176	+		IAI47_05090	0.35	-3.3
1,076,177	-		IAI47_05090	0.35	-2.6
1,076,294	+		IAI47_05090	0.70	-1.4
1,076,295	-		IAI47_05090	0.70	-1.6
1,076,295	-		IAI47_05090	0.70	-2.2
1,076,393	+				-0.3
1,076,393	+				+2.4
1,076,393	+				-0.9
1,076,394	-				-1.9
1,076,394	-				-1.7
1,076,394	-				+0.5
1,076,425	+				+1.0
1,076,425	+				-0.8
1,076,425	+				+1.5
1,076,425	+				+0.3
1,076,425	+				+2.3
1,076,426	-				+0.3
1,076,426	-				+1.5
1,076,426	-				+0.1
1,076,426	-				+0.4
1,076,491	+				+0.8
1,076,491	+				-1.9
1,076,492	-		IAI47_05095	0.10	+1.0
1,076,492	-		IAI47_05095	0.10	-0.3
1,076,492	-		IAI47_05095	0.10	+0.4
1,076,535	+		IAI47_05095	0.14	+0.8
1,076,536	-		IAI47_05095	0.14	+1.1
1,076,536	-		IAI47_05095	0.14	-0.1
1,076,544	+		IAI47_05095	0.15	-2.2
1,076,544	+		IAI47_05095	0.15	-1.6
1,076,544	+		IAI47_05095	0.15	+1.4
1,076,544	+		IAI47_05095	0.15	+0.8
1,076,545	-		IAI47_05095	0.15	-0.6
1,076,565	+		IAI47_05095	0.17	+2.7
1,076,581	+		IAI47_05095	0.19	-1.3
1,076,592	+		IAI47_05095	0.20	-0.3
1,076,593	-		IAI47_05095	0.20	+0.1
1,076,593	-		IAI47_05095	0.20	+1.3
1,076,593	-		IAI47_05095	0.20	+1.4
1,076,593	-		IAI47_05095	0.20	+0.8
1,076,620	+		IAI47_05095	0.23	+1.0
1,076,621	-		IAI47_05095	0.23	+1.7
1,076,621	-		IAI47_05095	0.23	+2.9
1,076,621	-		IAI47_05095	0.23	-0.2
1,076,623	+		IAI47_05095	0.23	+1.4
1,076,623	+		IAI47_05095	0.23	-0.0
1,076,623	+		IAI47_05095	0.23	-0.8
1,076,623	+		IAI47_05095	0.23	+3.0
1,076,623	+		IAI47_05095	0.23	+0.2
1,076,623	+		IAI47_05095	0.23	+1.4
1,076,623	+		IAI47_05095	0.23	-0.2
1,076,623	+		IAI47_05095	0.23	+0.6
1,076,623	+		IAI47_05095	0.23	-0.3
1,076,624	-		IAI47_05095	0.23	-0.2
1,076,624	-		IAI47_05095	0.23	-0.1
1,076,624	-		IAI47_05095	0.23	-1.2
1,076,624	-		IAI47_05095	0.23	+0.4
1,076,624	-		IAI47_05095	0.23	+0.3
1,076,624	-		IAI47_05095	0.23	+2.2
1,076,624	-		IAI47_05095	0.23	+0.4
1,076,639	-		IAI47_05095	0.25	-0.3
1,076,639	-		IAI47_05095	0.25	+0.8
1,076,709	+		IAI47_05095	0.31	-0.2
1,076,709	+		IAI47_05095	0.31	+0.4
1,076,710	-		IAI47_05095	0.32	+1.2
1,076,710	-		IAI47_05095	0.32	+0.9
1,076,752	+		IAI47_05095	0.36	+0.4
1,076,753	-		IAI47_05095	0.36	-1.1
1,076,753	-		IAI47_05095	0.36	+2.0
1,076,886	+		IAI47_05095	0.49	+0.6
1,076,886	+		IAI47_05095	0.49	-1.0
1,076,886	+		IAI47_05095	0.49	+1.0
1,076,887	-		IAI47_05095	0.49	+0.7
1,076,887	-		IAI47_05095	0.49	+0.0
1,076,887	-		IAI47_05095	0.49	+1.1
1,076,887	-		IAI47_05095	0.49	-0.4
1,076,993	+		IAI47_05095	0.59	-0.0
1,076,993	+				+0.4
1,076,993	+		IAI47_05095	0.59	-0.6
1,076,993	+		IAI47_05095	0.59	-1.0
1,076,993	+		IAI47_05095	0.59	+0.4
1,076,993	+		IAI47_05095	0.59	+0.7
1,076,993	+		IAI47_05095	0.59	+0.6
1,076,993	+		IAI47_05095	0.59	-1.2
1,076,994	-		IAI47_05095	0.60	-1.2
1,076,994	-		IAI47_05095	0.60	-0.3
1,076,994	-		IAI47_05095	0.60	-1.1
1,076,994	-		IAI47_05095	0.60	-1.2
1,076,994	-		IAI47_05095	0.60	-1.4
1,076,994	-		IAI47_05095	0.60	+0.8
1,076,994	-		IAI47_05095	0.60	+0.5
1,077,027	+		IAI47_05095	0.63	+0.4
1,077,027	+		IAI47_05095	0.63	-0.2
1,077,028	-		IAI47_05095	0.63	-0.2
1,077,028	-		IAI47_05095	0.63	+1.9
1,077,028	-		IAI47_05095	0.63	+1.3
1,077,039	+		IAI47_05095	0.64	-0.1
1,077,039	+		IAI47_05095	0.64	-1.4
1,077,040	-		IAI47_05095	0.64	+0.8
1,077,040	-		IAI47_05095	0.64	+0.9
1,077,040	-		IAI47_05095	0.64	+0.5
1,077,040	-		IAI47_05095	0.64	+0.5
1,077,074	-		IAI47_05095	0.67	+0.4
1,077,086	-		IAI47_05095	0.69	-0.7
1,077,086	-		IAI47_05095	0.69	+0.8
1,077,086	-		IAI47_05095	0.69	-0.1
1,077,086	-		IAI47_05095	0.69	+0.1
1,077,093	+		IAI47_05095	0.69	-0.3
1,077,093	+		IAI47_05095	0.69	+0.1
1,077,093	+		IAI47_05095	0.69	+0.8
1,077,094	-		IAI47_05095	0.69	-1.9
1,077,094	-		IAI47_05095	0.69	+0.5
1,077,094	-		IAI47_05095	0.69	-1.6
1,077,114	+		IAI47_05095	0.71	+0.6
1,077,114	+		IAI47_05095	0.71	-1.2
1,077,114	+		IAI47_05095	0.71	-0.1
1,077,114	+		IAI47_05095	0.71	+2.7
1,077,115	-		IAI47_05095	0.71	-1.2
1,077,115	-		IAI47_05095	0.71	+0.4
1,077,115	-		IAI47_05095	0.71	-0.6
1,077,115	-		IAI47_05095	0.71	+0.9
1,077,119	+		IAI47_05095	0.72	-0.4
1,077,120	-		IAI47_05095	0.72	+0.4
1,077,129	+		IAI47_05095	0.73	-0.5
1,077,129	+		IAI47_05095	0.73	-0.9
1,077,130	-		IAI47_05095	0.73	-0.0
1,077,130	-		IAI47_05095	0.73	-0.0
1,077,130	-		IAI47_05095	0.73	+0.5
1,077,194	-		IAI47_05095	0.79	-1.0
1,077,376	+				-0.1
1,077,377	-				+0.8
1,077,378	+				-1.6
1,077,378	+				+0.8
1,077,378	+				+1.9
1,077,378	+				-0.1
1,077,378	+				-0.5
1,077,378	+				-0.5
1,077,378	+				-0.1
1,077,378	+				-1.6
1,077,379	-				+0.8
1,077,379	-				-1.7
1,077,379	-				-0.5
1,077,389	-				-0.4
1,077,389	-				-0.2