Strain Fitness in Pantoea sp. MT58 around IAI47_05085

Experiment: Ying_all64 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 3
1,072,975	+				-0.9
1,073,103	+		IAI47_05080	0.25	-1.9
1,073,128	+		IAI47_05080	0.36	-0.9
1,073,129	-		IAI47_05080	0.37	+0.6
1,073,174	+		IAI47_05080	0.57	-0.1
1,073,200	+		IAI47_05080	0.69	-1.8
1,073,200	+		IAI47_05080	0.69	+0.4
1,073,243	+		IAI47_05080	0.88	-0.9
1,073,243	+		IAI47_05080	0.88	+0.1
1,073,243	+		IAI47_05080	0.88	+0.5
1,073,244	-		IAI47_05080	0.89	+2.4
1,073,244	-		IAI47_05080	0.89	-0.5
1,073,244	-		IAI47_05080	0.89	-1.9
1,073,266	+				-1.2
1,073,282	+				+1.5
1,073,282	+				+0.4
1,073,283	-				+0.8
1,073,283	-				-0.6
1,073,288	+				-0.6
1,073,288	+				+0.7
1,073,288	+				+2.2
1,073,289	-				-0.6
1,073,289	-				+0.2
1,073,289	-				-0.6
1,073,349	+				+0.4
1,073,365	+				-2.9
1,073,365	+				-0.2
1,073,366	-				-0.3
1,073,366	-				-1.1
1,073,366	-				-0.3
1,073,366	-				-0.6
1,073,366	-				-0.0
1,073,394	-				+3.2
1,073,394	-				+0.1
1,073,474	+				+0.9
1,073,474	+				-0.1
1,073,474	+				-0.6
1,073,474	+				+0.5
1,073,474	+				-0.6
1,073,474	+				-0.2
1,073,476	+				+1.9
1,073,477	-				+0.3
1,073,540	+				-0.0
1,073,540	+				+0.0
1,073,540	+				-0.6
1,073,540	+				+0.8
1,073,540	+				-1.4
1,073,540	+				-0.8
1,073,540	+				+1.8
1,073,540	+				+0.6
1,073,541	-				-0.4
1,073,541	-				+1.0
1,073,541	-				-0.8
1,073,541	-				+0.8
1,073,541	-				+0.5
1,073,541	-				-2.2
1,073,559	+				+1.4
1,073,559	+				-1.3
1,073,571	+				-0.5
1,073,571	+				+0.7
1,073,571	+				-0.0
1,073,571	+				+0.5
1,073,572	-				+0.6
1,073,572	-				-0.0
1,073,578	+				-0.2
1,073,578	+				-0.9
1,073,579	-				-0.6
1,073,711	+				+0.5
1,073,728	+				+0.8
1,073,729	-				-0.2
1,073,734	+				+3.0
1,073,734	+				+0.7
1,073,734	+				+1.7
1,073,734	+				+0.1
1,073,735	-				+0.2
1,073,735	-				-0.4
1,073,735	-				+0.6
1,073,735	-				+0.4
1,073,923	+		IAI47_05085	0.14	+1.1
1,073,924	-		IAI47_05085	0.14	-0.4
1,073,924	-		IAI47_05085	0.14	+0.4
1,073,924	-		IAI47_05085	0.14	-0.3
1,073,936	-		IAI47_05085	0.15	+0.4
1,073,936	-		IAI47_05085	0.15	+1.1
1,073,960	+		IAI47_05085	0.16	-1.2
1,073,961	-		IAI47_05085	0.16	-0.4
1,074,028	+		IAI47_05085	0.18	+0.4
1,074,028	+		IAI47_05085	0.18	-0.9
1,074,054	+		IAI47_05085	0.19	+1.2
1,074,054	+		IAI47_05085	0.19	+1.2
1,074,055	-		IAI47_05085	0.19	-0.9
1,074,055	-		IAI47_05085	0.19	+1.0
1,074,055	-		IAI47_05085	0.19	-1.0
1,074,100	+		IAI47_05085	0.21	-0.3
1,074,100	+		IAI47_05085	0.21	-0.6
1,074,101	-		IAI47_05085	0.21	-0.1
1,074,101	-		IAI47_05085	0.21	-0.6
1,074,104	+		IAI47_05085	0.21	-0.6
1,074,104	+		IAI47_05085	0.21	-0.6
1,074,104	+		IAI47_05085	0.21	-0.6
1,074,104	+		IAI47_05085	0.21	-0.6
1,074,105	-		IAI47_05085	0.22	+1.4
1,074,105	-		IAI47_05085	0.22	-1.6
1,074,105	-		IAI47_05085	0.22	-0.3
1,074,206	-		IAI47_05085	0.26	-1.2
1,074,255	+		IAI47_05085	0.28	-0.2
1,074,255	+		IAI47_05085	0.28	-0.8
1,074,256	-		IAI47_05085	0.28	+2.4
1,074,256	-		IAI47_05085	0.28	+0.8
1,074,268	+		IAI47_05085	0.28	-3.2
1,074,275	+		IAI47_05085	0.29	+0.8
1,074,275	+		IAI47_05085	0.29	+0.6
1,074,275	+		IAI47_05085	0.29	-1.0
1,074,276	-		IAI47_05085	0.29	+0.4
1,074,276	-		IAI47_05085	0.29	-0.3
1,074,292	+		IAI47_05085	0.29	+0.0
1,074,293	-		IAI47_05085	0.29	-1.8
1,074,293	-		IAI47_05085	0.29	+0.1
1,074,293	-		IAI47_05085	0.29	-0.0
1,074,293	-		IAI47_05085	0.29	+0.2
1,074,302	-		IAI47_05085	0.30	-0.6
1,074,302	-		IAI47_05085	0.30	+3.3
1,074,325	+		IAI47_05085	0.31	+0.5
1,074,325	+		IAI47_05085	0.31	+1.4
1,074,392	+		IAI47_05085	0.33	+0.4
1,074,490	+		IAI47_05085	0.37	+3.2
1,074,490	+		IAI47_05085	0.37	+1.1
1,074,490	+		IAI47_05085	0.37	+1.1
1,074,491	-		IAI47_05085	0.37	-0.2
1,074,502	+		IAI47_05085	0.38	-1.6
1,074,502	+		IAI47_05085	0.38	+0.2
1,074,503	-		IAI47_05085	0.38	-1.2
1,074,579	+		IAI47_05085	0.41	-0.0
1,074,579	+		IAI47_05085	0.41	-0.6
1,074,579	+		IAI47_05085	0.41	-0.3
1,074,579	+		IAI47_05085	0.41	+0.7
1,074,579	+		IAI47_05085	0.41	+0.4
1,074,579	+		IAI47_05085	0.41	-0.4
1,074,580	-		IAI47_05085	0.41	+1.2
1,074,580	-		IAI47_05085	0.41	+0.8
1,074,580	-		IAI47_05085	0.41	+0.3
1,074,580	-		IAI47_05085	0.41	-1.3
1,074,580	-		IAI47_05085	0.41	-1.3
1,074,580	-		IAI47_05085	0.41	-0.4
1,074,586	+		IAI47_05085	0.41	-0.4
1,074,621	-		IAI47_05085	0.43	+0.4
1,074,621	-		IAI47_05085	0.43	-0.9
1,074,653	-		IAI47_05085	0.44	-0.3
1,074,686	-		IAI47_05085	0.45	+0.4
1,074,686	-		IAI47_05085	0.45	-1.6
1,074,690	+		IAI47_05085	0.45	+0.0
1,074,690	+		IAI47_05085	0.45	-0.5
1,074,690	+		IAI47_05085	0.45	+0.1
1,074,690	+		IAI47_05085	0.45	-0.3
1,074,690	+		IAI47_05085	0.45	-1.2
1,074,691	-		IAI47_05085	0.46	-2.5
1,074,691	-		IAI47_05085	0.46	+0.4
1,074,691	-		IAI47_05085	0.46	+0.4
1,074,691	-		IAI47_05085	0.46	-0.6
1,074,691	-		IAI47_05085	0.46	+1.1
1,074,700	+		IAI47_05085	0.46	+0.7
1,074,717	+		IAI47_05085	0.47	-0.7
1,074,718	-		IAI47_05085	0.47	+1.2
1,074,718	-		IAI47_05085	0.47	+0.5
1,074,718	-		IAI47_05085	0.47	-0.4
1,074,718	-		IAI47_05085	0.47	+0.6
1,074,737	-		IAI47_05085	0.47	-1.2
1,074,809	+		IAI47_05085	0.50	-1.3
1,074,809	+		IAI47_05085	0.50	+1.4
1,074,809	+		IAI47_05085	0.50	+0.8
1,074,809	+		IAI47_05085	0.50	+0.9
1,074,809	+		IAI47_05085	0.50	+2.0
1,074,810	-		IAI47_05085	0.50	-0.3
1,074,810	-		IAI47_05085	0.50	-1.9
1,074,810	-		IAI47_05085	0.50	+1.7
1,074,810	-		IAI47_05085	0.50	+0.1
1,074,812	-		IAI47_05085	0.50	+0.4
1,074,848	+		IAI47_05085	0.52	-1.5
1,074,848	+		IAI47_05085	0.52	-0.5
1,074,848	+		IAI47_05085	0.52	-0.7
1,074,848	+		IAI47_05085	0.52	-0.1
1,074,848	+		IAI47_05085	0.52	-1.1
1,074,848	+		IAI47_05085	0.52	+0.4
1,074,848	+		IAI47_05085	0.52	-0.7
1,074,848	+		IAI47_05085	0.52	+0.2
1,074,848	+		IAI47_05085	0.52	-0.6
1,074,848	+		IAI47_05085	0.52	+1.3
1,074,849	-		IAI47_05085	0.52	+0.4
1,074,849	-		IAI47_05085	0.52	+0.0
1,074,849	-		IAI47_05085	0.52	-0.1
1,074,849	-		IAI47_05085	0.52	-1.0
1,074,849	-		IAI47_05085	0.52	-0.7
1,074,849	-		IAI47_05085	0.52	-1.6
1,074,938	+		IAI47_05085	0.56	-0.6
1,074,938	+		IAI47_05085	0.56	+3.6
1,074,939	-		IAI47_05085	0.56	+0.1
1,074,939	-		IAI47_05085	0.56	+0.6
1,074,939	-		IAI47_05085	0.56	-0.8
1,074,939	-		IAI47_05085	0.56	+0.1
1,074,939	-		IAI47_05085	0.56	-0.1
1,074,939	-		IAI47_05085	0.56	+1.8
1,074,992	+		IAI47_05085	0.58	+0.8
1,074,992	+		IAI47_05085	0.58	+0.5
1,074,993	-		IAI47_05085	0.58	-0.0
1,075,002	+		IAI47_05085	0.58	+0.4
1,075,002	+		IAI47_05085	0.58	-0.0
1,075,002	+		IAI47_05085	0.58	+0.4
1,075,002	+		IAI47_05085	0.58	+0.2
1,075,002	+		IAI47_05085	0.58	-1.2
1,075,002	+		IAI47_05085	0.58	+0.3
1,075,002	+		IAI47_05085	0.58	-0.7
1,075,002	+		IAI47_05085	0.58	+1.0
1,075,003	-		IAI47_05085	0.58	+0.4
1,075,003	-		IAI47_05085	0.58	-0.3
1,075,003	-		IAI47_05085	0.58	+2.0
1,075,003	-		IAI47_05085	0.58	+0.7
1,075,003	-		IAI47_05085	0.58	-0.2
1,075,006	+		IAI47_05085	0.58	-0.5
1,075,006	+		IAI47_05085	0.58	-0.9
1,075,006	+		IAI47_05085	0.58	-0.9
1,075,007	-		IAI47_05085	0.58	-1.1
1,075,007	-		IAI47_05085	0.58	+1.4
1,075,007	-		IAI47_05085	0.58	-1.9
1,075,007	-		IAI47_05085	0.58	+0.5
1,075,132	+		IAI47_05085	0.64	-0.8
1,075,132	+		IAI47_05085	0.64	-1.6
1,075,132	+		IAI47_05085	0.64	+0.2
1,075,132	+		IAI47_05085	0.64	+0.8
1,075,133	-		IAI47_05085	0.64	-0.6
1,075,186	+		IAI47_05085	0.66	+0.6
1,075,186	+		IAI47_05085	0.66	+0.4
1,075,187	-		IAI47_05085	0.66	-0.5
1,075,202	+		IAI47_05085	0.66	-0.5
1,075,203	-		IAI47_05085	0.67	+0.4
1,075,203	-		IAI47_05085	0.67	-1.4
1,075,203	-		IAI47_05085	0.67	-0.2
1,075,310	-		IAI47_05085	0.71	-1.2
1,075,331	+		IAI47_05085	0.72	-0.1
1,075,331	+		IAI47_05085	0.72	-1.1
1,075,332	-		IAI47_05085	0.72	+1.0
1,075,492	+		IAI47_05085	0.78	+1.4
1,075,499	-		IAI47_05085	0.79	+2.0
1,075,499	-		IAI47_05085	0.79	-1.5
1,075,544	-		IAI47_05085	0.80	+0.4
1,075,544	-		IAI47_05085	0.80	-0.6
1,075,574	+		IAI47_05085	0.82	-0.0
1,075,575	-		IAI47_05085	0.82	-0.2
1,075,575	-		IAI47_05085	0.82	+1.6
1,075,575	-		IAI47_05085	0.82	-0.5
1,075,575	-		IAI47_05085	0.82	-0.2
1,075,575	-		IAI47_05085	0.82	+0.8
1,075,575	-		IAI47_05085	0.82	+0.7
1,075,575	-		IAI47_05085	0.82	-0.4
1,075,575	-		IAI47_05085	0.82	-1.2
1,075,575	-		IAI47_05085	0.82	-1.1
1,075,585	+		IAI47_05085	0.82	-1.4
1,075,585	+		IAI47_05085	0.82	+1.5
1,075,585	+		IAI47_05085	0.82	-0.6
1,075,586	-		IAI47_05085	0.82	-1.2
1,075,586	-		IAI47_05085	0.82	-2.3
1,075,586	-		IAI47_05085	0.82	-1.6
1,075,597	+		IAI47_05085	0.83	+0.6
1,075,597	+		IAI47_05085	0.83	+0.7
1,075,597	+		IAI47_05085	0.83	-0.5
1,075,597	+		IAI47_05085	0.83	-0.0
1,075,597	+		IAI47_05085	0.83	-0.1
1,075,597	+		IAI47_05085	0.83	+0.1
1,075,597	+		IAI47_05085	0.83	-0.0
1,075,597	+		IAI47_05085	0.83	+0.9
1,075,598	-		IAI47_05085	0.83	-0.3
1,075,598	-		IAI47_05085	0.83	-1.5
1,075,598	-		IAI47_05085	0.83	-1.9
1,075,598	-		IAI47_05085	0.83	-0.2
1,075,598	-		IAI47_05085	0.83	+1.2
1,075,598	-		IAI47_05085	0.83	-1.6
1,075,639	+		IAI47_05085	0.84	-1.2
1,075,639	+		IAI47_05085	0.84	-0.2
1,075,639	+		IAI47_05085	0.84	+0.1
1,075,639	+		IAI47_05085	0.84	+3.3
1,075,639	+		IAI47_05085	0.84	-0.7
1,075,639	+		IAI47_05085	0.84	-1.2
1,075,639	+		IAI47_05085	0.84	-1.8
1,075,640	-		IAI47_05085	0.84	+0.4
1,075,724	-		IAI47_05085	0.88	+0.4
1,075,724	-		IAI47_05085	0.88	+1.4
1,075,726	+		IAI47_05085	0.88	-0.8
1,075,754	-		IAI47_05085	0.89	-0.9
1,075,771	+		IAI47_05085	0.90	-0.0
1,075,772	-		IAI47_05085	0.90	-1.5
1,075,797	+				+0.2
1,075,797	+				+1.2
1,075,798	-				-0.2
1,075,810	+				+0.3
1,075,820	+				-0.7
1,075,820	+				+0.7
1,075,820	+				+1.3
1,075,820	+				+0.1
1,075,821	-				-0.3
1,075,821	-				+1.2
1,075,821	-				-1.8
1,075,821	-				+0.9
1,075,821	-				+1.4
1,075,823	+				+0.4
1,075,823	+				-1.6
1,075,823	+				-0.2
1,075,823	+				-0.2
1,075,824	-				+0.4
1,075,853	-				+3.1
1,075,907	+				-0.6
1,075,907	+				-0.4
1,075,907	+				+1.8
1,075,907	+				+0.1
1,075,907	+				-0.1
1,075,907	+				-0.2
1,075,908	-				-0.6
1,075,908	-				-0.5
1,075,908	-				-2.4
1,075,908	-				+1.6
1,075,908	-				+0.4
1,075,927	+				-0.3
1,075,927	+				-0.5
1,075,927	+				-1.5
1,075,927	+				-1.8
1,075,928	-				+0.4
1,075,928	-				-0.7
1,075,933	+				+0.8
1,075,934	+				+2.7
1,075,934	+				-0.6
1,075,934	+				-0.4
1,075,934	+				+2.0
1,075,935	-				-0.9
1,075,935	-				+1.4
1,075,935	-				+0.5
1,075,935	-				-1.0
1,075,935	-				+0.8
1,075,935	-				-0.2
1,075,935	-				+0.1
1,075,935	-				+0.4
1,075,985	+				+1.7
1,075,985	+				+0.0
1,075,985	+				-0.8
1,075,986	-				-1.1
1,075,986	-				+0.2
1,075,986	-				-0.6
1,075,997	+				+0.8
1,076,018	+				-1.0
1,076,018	+				+0.8
1,076,019	-				+0.5
1,076,062	+				-1.2
1,076,155	+		IAI47_05090	0.28	-2.6
1,076,155	+		IAI47_05090	0.28	-2.1
1,076,155	+		IAI47_05090	0.28	-1.8
1,076,155	+		IAI47_05090	0.28	-1.6
1,076,155	+		IAI47_05090	0.28	-3.2
1,076,156	-		IAI47_05090	0.29	-1.4
1,076,176	+		IAI47_05090	0.35	-3.3
1,076,177	-		IAI47_05090	0.35	-2.6
1,076,294	+		IAI47_05090	0.70	-1.4
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