Strain Fitness in Pantoea sp. MT58 around IAI47_04835

Experiment: Ying_all64 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 3
1,012,976	+		IAI47_04825	0.80	+1.0
1,012,999	+		IAI47_04825	0.83	+0.4
1,013,007	+		IAI47_04825	0.85	-1.2
1,013,007	+		IAI47_04825	0.85	+0.4
1,013,008	-		IAI47_04825	0.85	+1.3
1,013,008	-		IAI47_04825	0.85	+1.4
1,013,008	-		IAI47_04825	0.85	-0.2
1,013,051	+				+2.2
1,013,052	-				+1.7
1,013,052	-				-1.8
1,013,052	-				-0.1
1,013,052	-				+0.4
1,013,056	+				-0.9
1,013,056	+				-0.6
1,013,056	+				+1.4
1,013,056	+				-0.4
1,013,057	-				-2.6
1,013,130	+				+1.2
1,013,139	-				+0.4
1,013,144	+				-1.0
1,013,144	+				-1.2
1,013,144	+				-0.9
1,013,144	+				+0.3
1,013,144	+				-0.6
1,013,144	+				-0.6
1,013,144	+				-1.6
1,013,145	-				+0.1
1,013,145	-				-1.4
1,013,145	-				-0.1
1,013,145	-				+1.8
1,013,145	-				+0.4
1,013,145	-				+0.4
1,013,145	-				-0.6
1,013,263	+				-0.6
1,013,269	+				+1.4
1,013,269	+				-1.2
1,013,301	+				+0.0
1,013,302	-				-1.2
1,013,325	+				+1.0
1,013,325	+				+0.5
1,013,326	-				-0.1
1,013,326	-				-0.2
1,013,326	-				-0.6
1,013,326	-				-1.1
1,013,326	-				-1.2
1,013,326	-				+0.7
1,013,337	-				-0.2
1,013,337	-				-0.6
1,013,398	-		IAI47_04830	0.11	-1.2
1,013,466	-		IAI47_04830	0.29	-0.2
1,013,466	-		IAI47_04830	0.29	+2.1
1,013,536	+		IAI47_04830	0.47	-0.1
1,013,537	-		IAI47_04830	0.48	-0.6
1,013,615	-		IAI47_04830	0.68	-0.2
1,013,630	+		IAI47_04830	0.72	-1.9
1,013,630	+		IAI47_04830	0.72	+1.7
1,013,630	+		IAI47_04830	0.72	-0.2
1,013,631	-		IAI47_04830	0.72	-2.2
1,013,631	-		IAI47_04830	0.72	-1.2
1,013,631	-		IAI47_04830	0.72	+2.9
1,013,631	-		IAI47_04830	0.72	+0.4
1,013,631	-		IAI47_04830	0.72	+0.4
1,013,661	-		IAI47_04830	0.80	+1.4
1,013,674	+		IAI47_04830	0.83	+2.2
1,013,674	+		IAI47_04830	0.83	-0.2
1,013,674	+		IAI47_04830	0.83	+1.1
1,013,675	-		IAI47_04830	0.84	+0.6
1,013,716	+				-2.2
1,013,716	+				-0.3
1,013,716	+				-0.4
1,013,723	-				-0.8
1,013,723	-				+0.1
1,013,735	+				-0.3
1,013,735	+				+1.8
1,013,735	+				+0.8
1,013,735	+				-0.6
1,013,736	-				+2.0
1,013,736	-				+0.3
1,013,736	-				+0.0
1,013,736	-				-0.6
1,013,748	+				-1.8
1,013,749	-				-0.8
1,013,797	+				-0.2
1,013,798	-				-0.2
1,013,798	-				+2.5
1,013,798	-				+0.8
1,013,798	-				+0.3
1,013,802	-				-0.8
1,013,802	-				+0.0
1,013,813	-				-1.2
1,013,813	-				-1.6
1,013,822	-				+1.2
1,013,837	+				-1.2
1,013,837	+				-1.0
1,013,837	+				+0.0
1,013,838	-				-0.2
1,013,850	+				+0.2
1,013,850	+				-1.1
1,013,890	+				+2.9
1,013,890	+				+0.4
1,013,891	-				+1.2
1,013,893	+				-1.6
1,013,893	+				-0.9
1,013,893	+				-0.6
1,013,894	-				+1.4
1,013,900	+				+0.1
1,013,900	+				+0.7
1,013,900	+				-1.0
1,013,901	-				+1.2
1,013,901	-				-1.9
1,013,907	+				-1.9
1,013,956	-				-0.5
1,013,956	-				+1.0
1,013,980	+				+0.6
1,013,981	-				+1.1
1,013,981	-				-0.6
1,014,172	+		IAI47_04835	0.16	-2.2
1,014,173	-		IAI47_04835	0.16	-1.2
1,014,181	+		IAI47_04835	0.17	-0.6
1,014,181	+		IAI47_04835	0.17	-2.2
1,014,186	+		IAI47_04835	0.17	-1.6
1,014,187	-		IAI47_04835	0.18	-2.7
1,014,187	-		IAI47_04835	0.18	-1.6
1,014,187	-		IAI47_04835	0.18	-1.6
1,014,288	+		IAI47_04835	0.25	-0.2
1,014,288	+		IAI47_04835	0.25	-3.7
1,014,288	+		IAI47_04835	0.25	-0.6
1,014,288	+		IAI47_04835	0.25	-0.6
1,014,289	-		IAI47_04835	0.25	-2.9
1,014,289	-		IAI47_04835	0.25	-1.2
1,014,289	-		IAI47_04835	0.25	-2.4
1,014,292	+		IAI47_04835	0.25	-2.2
1,014,292	+		IAI47_04835	0.25	-0.6
1,014,292	+		IAI47_04835	0.25	-2.7
1,014,292	+		IAI47_04835	0.25	-4.0
1,014,292	+		IAI47_04835	0.25	-1.6
1,014,293	-		IAI47_04835	0.26	-2.2
1,014,315	+		IAI47_04835	0.27	+0.4
1,014,315	+		IAI47_04835	0.27	-0.2
1,014,315	+		IAI47_04835	0.27	+1.0
1,014,316	-		IAI47_04835	0.27	-1.2
1,014,316	-		IAI47_04835	0.27	-1.9
1,014,316	-		IAI47_04835	0.27	-0.6
1,014,316	-		IAI47_04835	0.27	-3.0
1,014,316	-		IAI47_04835	0.27	-3.4
1,014,316	-		IAI47_04835	0.27	-2.3
1,014,316	-		IAI47_04835	0.27	-3.7
1,014,316	-		IAI47_04835	0.27	-2.4
1,014,319	+		IAI47_04835	0.27	-1.6
1,014,319	+		IAI47_04835	0.27	+0.4
1,014,320	-		IAI47_04835	0.28	-2.4
1,014,320	-		IAI47_04835	0.28	-2.9
1,014,422	-		IAI47_04835	0.35	-3.7
1,014,422	-		IAI47_04835	0.35	-1.9
1,014,453	+		IAI47_04835	0.38	-2.4
1,014,453	+		IAI47_04835	0.38	-0.6
1,014,515	-		IAI47_04835	0.42	-2.0
1,014,570	-		IAI47_04835	0.46	-1.6
1,014,570	-		IAI47_04835	0.46	-1.9
1,014,603	+		IAI47_04835	0.49	-0.6
1,014,603	+		IAI47_04835	0.49	-1.2
1,014,606	+		IAI47_04835	0.49	-0.9
1,014,739	+		IAI47_04835	0.59	-1.9
1,014,791	-		IAI47_04835	0.63	-0.6
1,014,864	+		IAI47_04835	0.68	-2.2
1,014,864	+		IAI47_04835	0.68	+0.4
1,014,898	+		IAI47_04835	0.71	-2.2
1,014,898	+		IAI47_04835	0.71	-1.2
1,014,936	+		IAI47_04835	0.74	-2.4
1,014,936	+		IAI47_04835	0.74	-0.6
1,014,936	+		IAI47_04835	0.74	-1.2
1,014,936	+		IAI47_04835	0.74	+0.4
1,014,936	+		IAI47_04835	0.74	-2.7
1,014,937	-		IAI47_04835	0.74	-3.0
1,014,937	-		IAI47_04835	0.74	-0.6
1,014,937	-		IAI47_04835	0.74	-1.4
1,014,976	+		IAI47_04835	0.77	-2.7
1,014,976	+		IAI47_04835	0.77	-1.2
1,014,976	+		IAI47_04835	0.77	+2.0
1,014,977	-		IAI47_04835	0.77	-2.4
1,014,977	-		IAI47_04835	0.77	-1.9
1,015,111	-		IAI47_04835	0.87	-1.4
1,015,111	-		IAI47_04835	0.87	-1.2
1,015,111	-		IAI47_04835	0.87	-2.2
1,015,111	-		IAI47_04835	0.87	-1.6
1,015,136	-		IAI47_04835	0.89	-0.9
1,015,235	+				-0.6
1,015,236	-				-3.7
1,015,236	-				-2.2
1,015,236	-				+0.0
1,015,274	+				-2.7
1,015,275	-				-1.2
1,015,275	-				-2.2
1,015,287	+				-1.2
1,015,288	-				+1.4
1,015,288	-				-1.9
1,015,310	-				+1.9
1,015,310	-				+2.3
1,015,310	-				+0.2
1,015,311	+				-0.6
1,015,312	-				+1.4
1,015,312	-				-0.9
1,015,340	+				+2.2
1,015,341	-				-0.4
1,015,399	+				-1.9
1,015,399	+				-1.4
1,015,399	+				-0.8
1,015,399	+				+1.0
1,015,400	-				-0.2
1,015,400	-				-0.6
1,015,438	+				+0.3
1,015,439	-				-1.2
1,015,439	-				+0.1
1,015,439	-				-0.3
1,015,439	-				+0.1
1,015,458	+				-0.4
1,015,459	-				-0.0
1,015,459	-				-1.2
1,015,481	+				-1.6
1,015,497	+				-0.6
1,015,497	+				-1.4
1,015,497	+				-0.1
1,015,497	+				+0.2
1,015,498	-				+1.6
1,015,498	-				-1.2
1,015,498	-				+1.1
1,015,503	+				+1.4
1,015,630	-		IAI47_04840	0.24	+0.3
1,015,750	-		IAI47_04840	0.40	-1.3
1,015,750	-		IAI47_04840	0.40	-0.2
1,015,750	-		IAI47_04840	0.40	+0.3
1,015,750	-		IAI47_04840	0.40	-0.9
1,015,797	+		IAI47_04840	0.47	+1.3
1,015,798	-		IAI47_04840	0.47	+0.9
1,015,805	-		IAI47_04840	0.48	+1.5
1,015,805	-		IAI47_04840	0.48	-0.8
1,015,812	+		IAI47_04840	0.49	+0.7
1,015,832	-		IAI47_04840	0.51	+0.7
1,015,857	+		IAI47_04840	0.55	+1.4
1,015,858	-		IAI47_04840	0.55	-0.1
1,015,913	+		IAI47_04840	0.62	+0.9
1,015,913	+		IAI47_04840	0.62	+0.6
1,015,913	+		IAI47_04840	0.62	+0.9
1,015,913	+		IAI47_04840	0.62	-1.9
1,015,913	+		IAI47_04840	0.62	+0.6
1,015,913	+		IAI47_04840	0.62	-0.2
1,015,914	-		IAI47_04840	0.62	+2.0
1,015,914	-		IAI47_04840	0.62	-0.8
1,015,914	-		IAI47_04840	0.62	-0.6
1,015,914	-		IAI47_04840	0.62	-0.2
1,015,914	-		IAI47_04840	0.62	-0.8
1,016,002	-		IAI47_04840	0.74	-1.2
1,016,002	-		IAI47_04840	0.74	+0.8
1,016,047	+		IAI47_04840	0.80	+0.8
1,016,047	+		IAI47_04840	0.80	-0.6
1,016,048	-		IAI47_04840	0.80	+0.3
1,016,048	-		IAI47_04840	0.80	+0.4
1,016,048	-		IAI47_04840	0.80	-1.6
1,016,108	+		IAI47_04840	0.88	+2.2
1,016,109	-		IAI47_04840	0.88	+0.7
1,016,109	-		IAI47_04840	0.88	+2.0
1,016,146	+				+0.2
1,016,182	+				+1.4
1,016,183	-				+0.4
1,016,183	-				+2.2
1,016,183	-				-2.2
1,016,183	-				+1.2
1,016,183	-				-0.4
1,016,183	-				-0.3
1,016,194	+				-2.6
1,016,195	-				+1.3
1,016,195	-				-0.8
1,016,236	-				+1.6