Experiment: Ying_all64 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_04605 and IAI47_04610 are separated by 165 nucleotides IAI47_04610 and IAI47_04615 are separated by 324 nucleotides IAI47_04615 and IAI47_04620 are separated by 144 nucleotides
IAI47_04605: IAI47_04605 - magnesium-translocating P-type ATPase, at 969,013 to 971,715
_04605
IAI47_04610: IAI47_04610 - serine protein kinase RIO, at 971,881 to 972,735
_04610
IAI47_04615: IAI47_04615 - cold shock domain-containing protein, at 973,060 to 973,548
_04615
IAI47_04620: IAI47_04620 - YmjA family protein, at 973,693 to 973,938
_04620
Position (kb) 971
972
973 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 970.944 kb on + strand, within IAI47_04605 at 970.945 kb on - strand, within IAI47_04605 at 970.945 kb on - strand, within IAI47_04605 at 971.048 kb on + strand, within IAI47_04605 at 971.048 kb on + strand, within IAI47_04605 at 971.048 kb on + strand, within IAI47_04605 at 971.048 kb on + strand, within IAI47_04605 at 971.049 kb on - strand, within IAI47_04605 at 971.049 kb on - strand, within IAI47_04605 at 971.049 kb on - strand, within IAI47_04605 at 971.054 kb on + strand, within IAI47_04605 at 971.054 kb on + strand, within IAI47_04605 at 971.055 kb on - strand, within IAI47_04605 at 971.107 kb on + strand, within IAI47_04605 at 971.107 kb on + strand, within IAI47_04605 at 971.107 kb on + strand, within IAI47_04605 at 971.107 kb on + strand, within IAI47_04605 at 971.108 kb on - strand, within IAI47_04605 at 971.108 kb on - strand, within IAI47_04605 at 971.108 kb on - strand, within IAI47_04605 at 971.172 kb on + strand, within IAI47_04605 at 971.173 kb on - strand, within IAI47_04605 at 971.224 kb on + strand, within IAI47_04605 at 971.224 kb on + strand, within IAI47_04605 at 971.224 kb on + strand, within IAI47_04605 at 971.224 kb on + strand, within IAI47_04605 at 971.224 kb on + strand, within IAI47_04605 at 971.225 kb on - strand, within IAI47_04605 at 971.225 kb on - strand, within IAI47_04605 at 971.225 kb on - strand, within IAI47_04605 at 971.225 kb on - strand, within IAI47_04605 at 971.225 kb on - strand, within IAI47_04605 at 971.225 kb on - strand, within IAI47_04605 at 971.280 kb on + strand, within IAI47_04605 at 971.281 kb on - strand, within IAI47_04605 at 971.281 kb on - strand, within IAI47_04605 at 971.281 kb on - strand, within IAI47_04605 at 971.289 kb on + strand, within IAI47_04605 at 971.290 kb on - strand, within IAI47_04605 at 971.290 kb on - strand, within IAI47_04605 at 971.310 kb on + strand, within IAI47_04605 at 971.310 kb on + strand, within IAI47_04605 at 971.310 kb on + strand, within IAI47_04605 at 971.310 kb on + strand, within IAI47_04605 at 971.311 kb on - strand, within IAI47_04605 at 971.311 kb on - strand, within IAI47_04605 at 971.311 kb on - strand, within IAI47_04605 at 971.436 kb on + strand, within IAI47_04605 at 971.437 kb on - strand, within IAI47_04605 at 971.437 kb on - strand, within IAI47_04605 at 971.438 kb on + strand, within IAI47_04605 at 971.439 kb on - strand, within IAI47_04605 at 971.439 kb on - strand, within IAI47_04605 at 971.465 kb on + strand at 971.465 kb on + strand at 971.466 kb on - strand at 971.472 kb on + strand at 971.472 kb on + strand at 971.472 kb on + strand at 971.472 kb on + strand at 971.472 kb on + strand at 971.472 kb on + strand at 971.472 kb on + strand at 971.472 kb on + strand at 971.472 kb on + strand at 971.472 kb on + strand at 971.473 kb on - strand at 971.473 kb on - strand at 971.473 kb on - strand at 971.473 kb on - strand at 971.473 kb on - strand at 971.473 kb on - strand at 971.473 kb on - strand at 971.473 kb on - strand at 971.473 kb on - strand at 971.519 kb on + strand at 971.520 kb on - strand at 971.547 kb on + strand at 971.547 kb on + strand at 971.548 kb on - strand at 971.620 kb on + strand at 971.621 kb on - strand at 971.621 kb on - strand at 971.621 kb on - strand at 971.621 kb on - strand at 971.621 kb on - strand at 971.654 kb on - strand at 971.686 kb on + strand at 971.686 kb on + strand at 971.686 kb on + strand at 971.686 kb on + strand at 971.686 kb on + strand at 971.687 kb on - strand at 971.687 kb on - strand at 971.687 kb on - strand at 971.687 kb on - strand at 971.687 kb on - strand at 971.713 kb on + strand at 971.713 kb on + strand at 971.714 kb on - strand at 971.714 kb on - strand at 971.770 kb on + strand at 971.770 kb on + strand at 971.778 kb on + strand at 971.778 kb on + strand at 971.779 kb on - strand at 971.779 kb on - strand at 971.779 kb on - strand at 971.821 kb on + strand at 971.836 kb on + strand at 971.836 kb on + strand at 971.836 kb on + strand at 971.836 kb on + strand at 971.836 kb on + strand at 971.837 kb on - strand at 971.837 kb on - strand at 971.868 kb on + strand at 971.869 kb on - strand at 971.872 kb on - strand at 971.882 kb on + strand at 971.883 kb on - strand at 971.921 kb on + strand at 971.921 kb on + strand at 971.921 kb on + strand at 971.921 kb on + strand at 971.922 kb on - strand at 971.922 kb on - strand at 971.924 kb on + strand at 971.924 kb on + strand at 971.924 kb on + strand at 971.925 kb on - strand at 971.925 kb on - strand at 971.925 kb on - strand at 971.925 kb on - strand at 971.925 kb on - strand at 971.925 kb on - strand at 971.967 kb on + strand, within IAI47_04610 at 971.967 kb on + strand, within IAI47_04610 at 971.968 kb on - strand, within IAI47_04610 at 971.968 kb on - strand, within IAI47_04610 at 972.038 kb on + strand, within IAI47_04610 at 972.039 kb on - strand, within IAI47_04610 at 972.039 kb on - strand, within IAI47_04610 at 972.062 kb on + strand, within IAI47_04610 at 972.063 kb on - strand, within IAI47_04610 at 972.072 kb on + strand, within IAI47_04610 at 972.072 kb on + strand, within IAI47_04610 at 972.073 kb on - strand, within IAI47_04610 at 972.098 kb on + strand, within IAI47_04610 at 972.098 kb on + strand, within IAI47_04610 at 972.098 kb on + strand, within IAI47_04610 at 972.098 kb on + strand, within IAI47_04610 at 972.098 kb on + strand, within IAI47_04610 at 972.098 kb on + strand, within IAI47_04610 at 972.098 kb on + strand, within IAI47_04610 at 972.098 kb on + strand, within IAI47_04610 at 972.098 kb on + strand, within IAI47_04610 at 972.098 kb on + strand, within IAI47_04610 at 972.099 kb on - strand, within IAI47_04610 at 972.099 kb on - strand, within IAI47_04610 at 972.099 kb on - strand, within IAI47_04610 at 972.099 kb on - strand, within IAI47_04610 at 972.099 kb on - strand, within IAI47_04610 at 972.099 kb on - strand, within IAI47_04610 at 972.099 kb on - strand, within IAI47_04610 at 972.101 kb on + strand, within IAI47_04610 at 972.101 kb on + strand, within IAI47_04610 at 972.101 kb on + strand, within IAI47_04610 at 972.101 kb on + strand, within IAI47_04610 at 972.102 kb on - strand, within IAI47_04610 at 972.102 kb on - strand, within IAI47_04610 at 972.102 kb on - strand, within IAI47_04610 at 972.102 kb on - strand, within IAI47_04610 at 972.102 kb on - strand, within IAI47_04610 at 972.102 kb on - strand, within IAI47_04610 at 972.118 kb on + strand, within IAI47_04610 at 972.118 kb on + strand, within IAI47_04610 at 972.119 kb on - strand, within IAI47_04610 at 972.119 kb on - strand, within IAI47_04610 at 972.119 kb on - strand, within IAI47_04610 at 972.187 kb on - strand, within IAI47_04610 at 972.187 kb on - strand, within IAI47_04610 at 972.187 kb on - strand, within IAI47_04610 at 972.229 kb on + strand, within IAI47_04610 at 972.229 kb on + strand, within IAI47_04610 at 972.246 kb on + strand, within IAI47_04610 at 972.246 kb on + strand, within IAI47_04610 at 972.246 kb on + strand, within IAI47_04610 at 972.247 kb on - strand, within IAI47_04610 at 972.273 kb on + strand, within IAI47_04610 at 972.273 kb on + strand, within IAI47_04610 at 972.274 kb on - strand, within IAI47_04610 at 972.379 kb on + strand, within IAI47_04610 at 972.380 kb on - strand, within IAI47_04610 at 972.380 kb on - strand, within IAI47_04610 at 972.380 kb on - strand, within IAI47_04610 at 972.401 kb on + strand, within IAI47_04610 at 972.401 kb on + strand, within IAI47_04610 at 972.401 kb on + strand, within IAI47_04610 at 972.401 kb on + strand, within IAI47_04610 at 972.402 kb on - strand, within IAI47_04610 at 972.402 kb on - strand, within IAI47_04610 at 972.402 kb on - strand, within IAI47_04610 at 972.402 kb on - strand, within IAI47_04610 at 972.402 kb on - strand, within IAI47_04610 at 972.412 kb on + strand, within IAI47_04610 at 972.413 kb on - strand, within IAI47_04610 at 972.451 kb on + strand, within IAI47_04610 at 972.486 kb on + strand, within IAI47_04610 at 972.486 kb on + strand, within IAI47_04610 at 972.487 kb on - strand, within IAI47_04610 at 972.543 kb on + strand, within IAI47_04610 at 972.544 kb on - strand, within IAI47_04610 at 972.544 kb on - strand, within IAI47_04610 at 972.544 kb on - strand, within IAI47_04610 at 972.557 kb on + strand, within IAI47_04610 at 972.557 kb on + strand, within IAI47_04610 at 972.579 kb on + strand, within IAI47_04610 at 972.579 kb on + strand, within IAI47_04610 at 972.579 kb on + strand, within IAI47_04610 at 972.579 kb on + strand, within IAI47_04610 at 972.579 kb on + strand, within IAI47_04610 at 972.580 kb on - strand, within IAI47_04610 at 972.580 kb on - strand, within IAI47_04610 at 972.580 kb on - strand, within IAI47_04610 at 972.597 kb on + strand, within IAI47_04610 at 972.597 kb on + strand, within IAI47_04610 at 972.598 kb on - strand, within IAI47_04610 at 972.599 kb on + strand, within IAI47_04610 at 972.599 kb on + strand, within IAI47_04610 at 972.600 kb on - strand, within IAI47_04610 at 972.600 kb on - strand, within IAI47_04610 at 972.600 kb on - strand, within IAI47_04610 at 972.640 kb on - strand, within IAI47_04610 at 972.641 kb on + strand, within IAI47_04610 at 972.641 kb on + strand, within IAI47_04610 at 972.641 kb on + strand, within IAI47_04610 at 972.641 kb on + strand, within IAI47_04610 at 972.642 kb on - strand, within IAI47_04610 at 972.642 kb on - strand, within IAI47_04610 at 972.642 kb on - strand, within IAI47_04610 at 972.642 kb on - strand, within IAI47_04610 at 972.743 kb on + strand at 972.744 kb on - strand at 972.744 kb on - strand at 972.745 kb on + strand at 972.745 kb on + strand at 972.745 kb on + strand at 972.745 kb on + strand at 972.745 kb on + strand at 972.745 kb on + strand at 972.746 kb on - strand at 972.746 kb on - strand at 972.746 kb on - strand at 972.746 kb on - strand at 972.746 kb on - strand at 972.750 kb on + strand at 972.750 kb on + strand at 972.750 kb on + strand at 972.750 kb on + strand at 972.750 kb on + strand at 972.751 kb on - strand at 972.751 kb on - strand at 972.751 kb on - strand at 972.751 kb on - strand at 972.751 kb on - strand at 972.751 kb on - strand at 972.751 kb on - strand at 972.751 kb on - strand at 972.751 kb on - strand at 972.751 kb on - strand at 972.790 kb on + strand at 972.791 kb on - strand at 972.834 kb on + strand at 972.834 kb on + strand at 972.834 kb on + strand at 972.835 kb on - strand at 972.835 kb on - strand at 972.835 kb on - strand at 972.835 kb on - strand at 972.835 kb on - strand at 972.835 kb on - strand at 972.840 kb on + strand at 972.841 kb on - strand at 972.936 kb on - strand at 972.976 kb on + strand at 972.976 kb on + strand at 972.976 kb on + strand at 972.976 kb on + strand at 972.976 kb on + strand at 972.976 kb on + strand at 972.976 kb on + strand at 972.976 kb on + strand at 972.977 kb on - strand at 972.977 kb on - strand at 972.994 kb on + strand at 973.061 kb on + strand at 973.062 kb on - strand at 973.074 kb on + strand at 973.074 kb on + strand at 973.083 kb on + strand at 973.209 kb on + strand, within IAI47_04615 at 973.210 kb on - strand, within IAI47_04615 at 973.249 kb on - strand, within IAI47_04615 at 973.292 kb on + strand, within IAI47_04615 at 973.292 kb on + strand, within IAI47_04615 at 973.293 kb on - strand, within IAI47_04615 at 973.334 kb on + strand, within IAI47_04615 at 973.334 kb on + strand, within IAI47_04615 at 973.334 kb on + strand, within IAI47_04615 at 973.334 kb on + strand, within IAI47_04615 at 973.334 kb on + strand, within IAI47_04615 at 973.334 kb on + strand, within IAI47_04615 at 973.335 kb on - strand, within IAI47_04615 at 973.335 kb on - strand, within IAI47_04615 at 973.335 kb on - strand, within IAI47_04615 at 973.335 kb on - strand, within IAI47_04615 at 973.335 kb on - strand, within IAI47_04615 at 973.335 kb on - strand, within IAI47_04615 at 973.335 kb on - strand, within IAI47_04615 at 973.340 kb on + strand, within IAI47_04615 at 973.340 kb on + strand, within IAI47_04615 at 973.340 kb on + strand, within IAI47_04615 at 973.340 kb on + strand, within IAI47_04615 at 973.341 kb on - strand, within IAI47_04615 at 973.341 kb on - strand, within IAI47_04615 at 973.341 kb on - strand, within IAI47_04615 at 973.341 kb on - strand, within IAI47_04615 at 973.341 kb on - strand, within IAI47_04615 at 973.341 kb on - strand, within IAI47_04615 at 973.341 kb on - strand, within IAI47_04615 at 973.341 kb on - strand, within IAI47_04615 at 973.341 kb on - strand, within IAI47_04615 at 973.370 kb on + strand, within IAI47_04615 at 973.371 kb on - strand, within IAI47_04615 at 973.371 kb on - strand, within IAI47_04615 at 973.378 kb on + strand, within IAI47_04615 at 973.378 kb on + strand, within IAI47_04615 at 973.378 kb on + strand, within IAI47_04615 at 973.379 kb on - strand, within IAI47_04615 at 973.379 kb on - strand, within IAI47_04615 at 973.379 kb on - strand, within IAI47_04615 at 973.379 kb on - strand, within IAI47_04615 at 973.379 kb on - strand, within IAI47_04615 at 973.379 kb on - strand, within IAI47_04615 at 973.452 kb on + strand, within IAI47_04615 at 973.453 kb on - strand, within IAI47_04615 at 973.453 kb on - strand, within IAI47_04615 at 973.453 kb on - strand, within IAI47_04615 at 973.453 kb on - strand, within IAI47_04615 at 973.453 kb on - strand, within IAI47_04615 at 973.453 kb on - strand, within IAI47_04615 at 973.509 kb on + strand at 973.560 kb on + strand at 973.560 kb on + strand at 973.560 kb on + strand at 973.560 kb on + strand at 973.560 kb on + strand at 973.560 kb on + strand at 973.561 kb on - strand at 973.561 kb on - strand at 973.561 kb on - strand at 973.561 kb on - strand at 973.561 kb on - strand at 973.565 kb on + strand at 973.565 kb on + strand at 973.566 kb on - strand at 973.566 kb on - strand at 973.591 kb on + strand at 973.591 kb on + strand at 973.614 kb on + strand at 973.614 kb on + strand at 973.614 kb on + strand at 973.614 kb on + strand at 973.614 kb on + strand at 973.614 kb on + strand at 973.614 kb on + strand at 973.615 kb on - strand at 973.615 kb on - strand at 973.615 kb on - strand at 973.615 kb on - strand at 973.615 kb on - strand at 973.615 kb on - strand at 973.615 kb on - strand at 973.615 kb on - strand at 973.615 kb on - strand at 973.616 kb on + strand at 973.616 kb on + strand at 973.616 kb on + strand at 973.616 kb on + strand at 973.616 kb on + strand at 973.616 kb on + strand at 973.616 kb on + strand at 973.616 kb on + strand at 973.616 kb on + strand at 973.616 kb on + strand at 973.616 kb on + strand at 973.616 kb on + strand at 973.616 kb on + strand at 973.616 kb on + strand at 973.617 kb on - strand at 973.617 kb on - strand at 973.617 kb on - strand at 973.617 kb on - strand at 973.617 kb on - strand at 973.617 kb on - strand at 973.617 kb on - strand at 973.617 kb on - strand at 973.617 kb on - strand at 973.617 kb on - strand at 973.617 kb on - strand at 973.617 kb on - strand at 973.617 kb on - strand at 973.618 kb on + strand at 973.618 kb on + strand at 973.618 kb on + strand at 973.618 kb on + strand at 973.618 kb on + strand at 973.618 kb on + strand at 973.618 kb on + strand at 973.618 kb on + strand at 973.618 kb on + strand at 973.618 kb on + strand at 973.618 kb on + strand at 973.619 kb on - strand at 973.619 kb on - strand at 973.619 kb on - strand at 973.619 kb on - strand at 973.619 kb on - strand at 973.619 kb on - strand at 973.619 kb on - strand at 973.619 kb on - strand at 973.619 kb on - strand at 973.619 kb on - strand at 973.660 kb on + strand at 973.661 kb on - strand at 973.687 kb on + strand at 973.688 kb on - strand at 973.688 kb on - strand at 973.688 kb on - strand at 973.694 kb on + strand at 973.694 kb on + strand at 973.695 kb on - strand at 973.695 kb on - strand at 973.729 kb on - strand, within IAI47_04620
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3 remove 970,944 + IAI47_04605 0.71 -1.6 970,945 - IAI47_04605 0.71 -1.2 970,945 - IAI47_04605 0.71 -1.2 971,048 + IAI47_04605 0.75 -1.6 971,048 + IAI47_04605 0.75 -3.7 971,048 + IAI47_04605 0.75 -4.1 971,048 + IAI47_04605 0.75 -0.9 971,049 - IAI47_04605 0.75 -1.6 971,049 - IAI47_04605 0.75 -1.9 971,049 - IAI47_04605 0.75 -2.2 971,054 + IAI47_04605 0.76 -2.6 971,054 + IAI47_04605 0.76 -3.3 971,055 - IAI47_04605 0.76 -3.2 971,107 + IAI47_04605 0.77 -2.7 971,107 + IAI47_04605 0.77 -1.2 971,107 + IAI47_04605 0.77 -2.4 971,107 + IAI47_04605 0.77 -2.2 971,108 - IAI47_04605 0.78 -1.6 971,108 - IAI47_04605 0.78 -4.0 971,108 - IAI47_04605 0.78 -2.4 971,172 + IAI47_04605 0.80 -1.9 971,173 - IAI47_04605 0.80 -1.9 971,224 + IAI47_04605 0.82 -2.7 971,224 + IAI47_04605 0.82 -2.4 971,224 + IAI47_04605 0.82 +0.4 971,224 + IAI47_04605 0.82 -1.6 971,224 + IAI47_04605 0.82 -3.3 971,225 - IAI47_04605 0.82 -3.4 971,225 - IAI47_04605 0.82 -1.2 971,225 - IAI47_04605 0.82 -2.4 971,225 - IAI47_04605 0.82 -1.2 971,225 - IAI47_04605 0.82 -2.9 971,225 - IAI47_04605 0.82 -1.7 971,280 + IAI47_04605 0.84 -1.9 971,281 - IAI47_04605 0.84 -2.5 971,281 - IAI47_04605 0.84 -2.7 971,281 - IAI47_04605 0.84 -0.6 971,289 + IAI47_04605 0.84 -0.9 971,290 - IAI47_04605 0.84 -2.7 971,290 - IAI47_04605 0.84 -2.2 971,310 + IAI47_04605 0.85 -2.7 971,310 + IAI47_04605 0.85 -2.4 971,310 + IAI47_04605 0.85 -2.7 971,310 + IAI47_04605 0.85 -1.4 971,311 - IAI47_04605 0.85 -3.6 971,311 - IAI47_04605 0.85 -2.6 971,311 - IAI47_04605 0.85 -1.9 971,436 + IAI47_04605 0.90 -1.2 971,437 - IAI47_04605 0.90 -1.2 971,437 - IAI47_04605 0.90 -1.8 971,438 + IAI47_04605 0.90 -1.2 971,439 - IAI47_04605 0.90 -3.0 971,439 - IAI47_04605 0.90 -1.2 971,465 + -4.2 971,465 + -3.6 971,466 - -1.6 971,472 + -1.6 971,472 + -3.0 971,472 + -1.9 971,472 + +0.4 971,472 + -3.5 971,472 + -2.6 971,472 + -1.2 971,472 + -3.5 971,472 + -0.6 971,472 + -2.4 971,473 - -0.9 971,473 - -2.8 971,473 - -1.6 971,473 - -2.8 971,473 - -1.9 971,473 - -1.9 971,473 - -2.2 971,473 - -4.0 971,473 - -2.4 971,519 + -1.6 971,520 - -1.2 971,547 + -1.9 971,547 + -0.6 971,548 - -3.0 971,620 + -2.5 971,621 - -2.2 971,621 - -2.2 971,621 - -2.9 971,621 - -2.9 971,621 - -2.4 971,654 - -2.2 971,686 + -3.9 971,686 + -1.6 971,686 + -2.6 971,686 + -2.4 971,686 + -1.2 971,687 - -0.4 971,687 - -0.6 971,687 - -2.2 971,687 - -3.6 971,687 - -2.4 971,713 + -0.8 971,713 + -2.6 971,714 - -1.9 971,714 - -3.0 971,770 + -0.6 971,770 + -2.8 971,778 + -3.4 971,778 + -3.2 971,779 - -3.0 971,779 - -1.4 971,779 - -1.6 971,821 + +0.8 971,836 + +2.7 971,836 + -1.4 971,836 + +0.3 971,836 + +0.0 971,836 + +0.6 971,837 - +0.3 971,837 - -0.3 971,868 + -0.6 971,869 - -0.5 971,872 - +0.2 971,882 + -0.2 971,883 - +0.6 971,921 + +1.3 971,921 + +0.6 971,921 + -0.9 971,921 + +0.6 971,922 - -0.9 971,922 - -0.6 971,924 + +2.2 971,924 + +0.8 971,924 + -1.2 971,925 - -1.7 971,925 - -0.9 971,925 - -1.4 971,925 - -2.0 971,925 - +0.2 971,925 - -0.6 971,967 + IAI47_04610 0.10 -0.2 971,967 + IAI47_04610 0.10 -0.8 971,968 - 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Or see this region's nucleotide sequence