Experiment: Ying_all64 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_04080 and IAI47_04085 overlap by 4 nucleotides IAI47_04085 and IAI47_04090 are separated by 10 nucleotides
IAI47_04080: IAI47_04080 - MFS transporter, at 852,595 to 853,956
_04080
IAI47_04085: IAI47_04085 - glucarate dehydratase, at 853,953 to 855,299
_04085
IAI47_04090: IAI47_04090 - glucarate dehydratase, at 855,310 to 856,641
_04090
Position (kb) 853
854
855
856 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 853.008 kb on - strand, within IAI47_04080 at 853.008 kb on - strand, within IAI47_04080 at 853.072 kb on + strand, within IAI47_04080 at 853.072 kb on + strand, within IAI47_04080 at 853.073 kb on - strand, within IAI47_04080 at 853.073 kb on - strand, within IAI47_04080 at 853.073 kb on - strand, within IAI47_04080 at 853.101 kb on + strand, within IAI47_04080 at 853.196 kb on + strand, within IAI47_04080 at 853.196 kb on + strand, within IAI47_04080 at 853.197 kb on - strand, within IAI47_04080 at 853.197 kb on - strand, within IAI47_04080 at 853.197 kb on - strand, within IAI47_04080 at 853.227 kb on + strand, within IAI47_04080 at 853.228 kb on - strand, within IAI47_04080 at 853.228 kb on - strand, within IAI47_04080 at 853.243 kb on + strand, within IAI47_04080 at 853.244 kb on - strand, within IAI47_04080 at 853.244 kb on - strand, within IAI47_04080 at 853.366 kb on + strand, within IAI47_04080 at 853.366 kb on + strand, within IAI47_04080 at 853.366 kb on + strand, within IAI47_04080 at 853.366 kb on + strand, within IAI47_04080 at 853.367 kb on - strand, within IAI47_04080 at 853.367 kb on - strand, within IAI47_04080 at 853.367 kb on - strand, within IAI47_04080 at 853.367 kb on - strand, within IAI47_04080 at 853.367 kb on - strand, within IAI47_04080 at 853.378 kb on + strand, within IAI47_04080 at 853.378 kb on + strand, within IAI47_04080 at 853.378 kb on + strand, within IAI47_04080 at 853.378 kb on + strand, within IAI47_04080 at 853.378 kb on + strand, within IAI47_04080 at 853.378 kb on + strand, within IAI47_04080 at 853.378 kb on + strand, within IAI47_04080 at 853.379 kb on - strand, within IAI47_04080 at 853.379 kb on - strand, within IAI47_04080 at 853.387 kb on - strand, within IAI47_04080 at 853.399 kb on + strand, within IAI47_04080 at 853.399 kb on + strand, within IAI47_04080 at 853.399 kb on + strand, within IAI47_04080 at 853.400 kb on - strand, within IAI47_04080 at 853.407 kb on + strand, within IAI47_04080 at 853.407 kb on + strand, within IAI47_04080 at 853.407 kb on + strand, within IAI47_04080 at 853.407 kb on + strand, within IAI47_04080 at 853.407 kb on + strand, within IAI47_04080 at 853.407 kb on + strand, within IAI47_04080 at 853.408 kb on - strand, within IAI47_04080 at 853.427 kb on - strand, within IAI47_04080 at 853.427 kb on - strand, within IAI47_04080 at 853.434 kb on - strand, within IAI47_04080 at 853.459 kb on - strand, within IAI47_04080 at 853.459 kb on - strand, within IAI47_04080 at 853.511 kb on + strand, within IAI47_04080 at 853.545 kb on + strand, within IAI47_04080 at 853.545 kb on + strand, within IAI47_04080 at 853.546 kb on - strand, within IAI47_04080 at 853.563 kb on + strand, within IAI47_04080 at 853.605 kb on + strand, within IAI47_04080 at 853.605 kb on + strand, within IAI47_04080 at 853.606 kb on - strand, within IAI47_04080 at 853.606 kb on - strand, within IAI47_04080 at 853.623 kb on + strand, within IAI47_04080 at 853.623 kb on + strand, within IAI47_04080 at 853.623 kb on + strand, within IAI47_04080 at 853.623 kb on + strand, within IAI47_04080 at 853.623 kb on + strand, within IAI47_04080 at 853.623 kb on + strand, within IAI47_04080 at 853.624 kb on - strand, within IAI47_04080 at 853.624 kb on - strand, within IAI47_04080 at 853.624 kb on - strand, within IAI47_04080 at 853.624 kb on - strand, within IAI47_04080 at 853.624 kb on - strand, within IAI47_04080 at 853.624 kb on - strand, within IAI47_04080 at 853.624 kb on - strand, within IAI47_04080 at 853.624 kb on - strand, within IAI47_04080 at 853.627 kb on + strand, within IAI47_04080 at 853.627 kb on + strand, within IAI47_04080 at 853.627 kb on + strand, within IAI47_04080 at 853.627 kb on + strand, within IAI47_04080 at 853.628 kb on - strand, within IAI47_04080 at 853.628 kb on - strand, within IAI47_04080 at 853.628 kb on - strand, within IAI47_04080 at 853.628 kb on - strand, within IAI47_04080 at 853.628 kb on - strand, within IAI47_04080 at 853.628 kb on - strand, within IAI47_04080 at 853.677 kb on - strand, within IAI47_04080 at 853.681 kb on - strand, within IAI47_04080 at 853.681 kb on - strand, within IAI47_04080 at 853.681 kb on - strand, within IAI47_04080 at 853.719 kb on + strand, within IAI47_04080 at 853.720 kb on - strand, within IAI47_04080 at 853.810 kb on + strand, within IAI47_04080 at 853.810 kb on + strand, within IAI47_04080 at 853.811 kb on - strand, within IAI47_04080 at 853.811 kb on - strand, within IAI47_04080 at 853.852 kb on + strand at 853.852 kb on + strand at 853.852 kb on + strand at 853.852 kb on + strand at 853.852 kb on + strand at 853.852 kb on + strand at 853.853 kb on - strand at 853.853 kb on - strand at 853.941 kb on + strand at 853.942 kb on - strand at 853.959 kb on - strand at 853.959 kb on - strand at 853.979 kb on + strand at 853.980 kb on - strand at 853.980 kb on - strand at 853.980 kb on - strand at 853.980 kb on - strand at 853.980 kb on - strand at 854.011 kb on - strand at 854.018 kb on + strand at 854.018 kb on + strand at 854.018 kb on + strand at 854.018 kb on + strand at 854.018 kb on + strand at 854.018 kb on + strand at 854.018 kb on + strand at 854.018 kb on + strand at 854.018 kb on + strand at 854.018 kb on + strand at 854.018 kb on + strand at 854.018 kb on + strand at 854.018 kb on + strand at 854.018 kb on + strand at 854.018 kb on + strand at 854.018 kb on + strand at 854.019 kb on - strand at 854.019 kb on - strand at 854.019 kb on - strand at 854.019 kb on - strand at 854.019 kb on - strand at 854.019 kb on - strand at 854.031 kb on - strand at 854.031 kb on - strand at 854.031 kb on - strand at 854.057 kb on + strand at 854.133 kb on + strand, within IAI47_04085 at 854.133 kb on + strand, within IAI47_04085 at 854.134 kb on - strand, within IAI47_04085 at 854.134 kb on - strand, within IAI47_04085 at 854.134 kb on - strand, within IAI47_04085 at 854.134 kb on - strand, within IAI47_04085 at 854.134 kb on - strand, within IAI47_04085 at 854.134 kb on - strand, within IAI47_04085 at 854.338 kb on + strand, within IAI47_04085 at 854.339 kb on - strand, within IAI47_04085 at 854.398 kb on - strand, within IAI47_04085 at 854.398 kb on - strand, within IAI47_04085 at 854.398 kb on - strand, within IAI47_04085 at 854.406 kb on + strand, within IAI47_04085 at 854.406 kb on + strand, within IAI47_04085 at 854.406 kb on + strand, within IAI47_04085 at 854.406 kb on + strand, within IAI47_04085 at 854.406 kb on + strand, within IAI47_04085 at 854.406 kb on + strand, within IAI47_04085 at 854.407 kb on - strand, within IAI47_04085 at 854.407 kb on - strand, within IAI47_04085 at 854.407 kb on - strand, within IAI47_04085 at 854.423 kb on + strand, within IAI47_04085 at 854.423 kb on + strand, within IAI47_04085 at 854.440 kb on - strand, within IAI47_04085 at 854.444 kb on + strand, within IAI47_04085 at 854.444 kb on + strand, within IAI47_04085 at 854.445 kb on - strand, within IAI47_04085 at 854.445 kb on - strand, within IAI47_04085 at 854.472 kb on + strand, within IAI47_04085 at 854.472 kb on + strand, within IAI47_04085 at 854.472 kb on + strand, within IAI47_04085 at 854.472 kb on + strand, within IAI47_04085 at 854.472 kb on + strand, within IAI47_04085 at 854.473 kb on - strand, within IAI47_04085 at 854.473 kb on - strand, within IAI47_04085 at 854.473 kb on - strand, within IAI47_04085 at 854.473 kb on - strand, within IAI47_04085 at 854.540 kb on + strand, within IAI47_04085 at 854.540 kb on + strand, within IAI47_04085 at 854.540 kb on + strand, within IAI47_04085 at 854.540 kb on + strand, within IAI47_04085 at 854.540 kb on + strand, within IAI47_04085 at 854.541 kb on - strand, within IAI47_04085 at 854.541 kb on - strand, within IAI47_04085 at 854.544 kb on + strand, within IAI47_04085 at 854.544 kb on + strand, within IAI47_04085 at 854.545 kb on - strand, within IAI47_04085 at 854.552 kb on + strand, within IAI47_04085 at 854.553 kb on - strand, within IAI47_04085 at 854.643 kb on - strand, within IAI47_04085 at 854.643 kb on - strand, within IAI47_04085 at 854.657 kb on + strand, within IAI47_04085 at 854.657 kb on + strand, within IAI47_04085 at 854.658 kb on - strand, within IAI47_04085 at 854.696 kb on + strand, within IAI47_04085 at 854.696 kb on + strand, within IAI47_04085 at 854.696 kb on + strand, within IAI47_04085 at 854.697 kb on - strand, within IAI47_04085 at 854.697 kb on - strand, within IAI47_04085 at 854.721 kb on + strand, within IAI47_04085 at 854.721 kb on + strand, within IAI47_04085 at 854.721 kb on + strand, within IAI47_04085 at 854.722 kb on - strand, within IAI47_04085 at 854.754 kb on + strand, within IAI47_04085 at 854.755 kb on - strand, within IAI47_04085 at 854.755 kb on - strand, within IAI47_04085 at 854.755 kb on - strand, within IAI47_04085 at 854.816 kb on + strand, within IAI47_04085 at 854.816 kb on + strand, within IAI47_04085 at 854.816 kb on + strand, within IAI47_04085 at 854.816 kb on + strand, within IAI47_04085 at 854.816 kb on + strand, within IAI47_04085 at 854.817 kb on - strand, within IAI47_04085 at 854.817 kb on - strand, within IAI47_04085 at 854.817 kb on - strand, within IAI47_04085 at 854.817 kb on - strand, within IAI47_04085 at 854.972 kb on + strand, within IAI47_04085 at 854.973 kb on - strand, within IAI47_04085 at 854.984 kb on + strand, within IAI47_04085 at 854.985 kb on - strand, within IAI47_04085 at 854.985 kb on - strand, within IAI47_04085 at 855.002 kb on + strand, within IAI47_04085 at 855.003 kb on - strand, within IAI47_04085 at 855.047 kb on + strand, within IAI47_04085 at 855.169 kb on + strand at 855.169 kb on + strand at 855.169 kb on + strand at 855.170 kb on - strand at 855.170 kb on - strand at 855.170 kb on - strand at 855.189 kb on + strand at 855.189 kb on + strand at 855.190 kb on - strand at 855.190 kb on - strand at 855.237 kb on + strand at 855.237 kb on + strand at 855.237 kb on + strand at 855.237 kb on + strand at 855.237 kb on + strand at 855.237 kb on + strand at 855.237 kb on + strand at 855.237 kb on + strand at 855.238 kb on - strand at 855.238 kb on - strand at 855.238 kb on - strand at 855.238 kb on - strand at 855.238 kb on - strand at 855.238 kb on - strand at 855.297 kb on + strand at 855.297 kb on + strand at 855.297 kb on + strand at 855.298 kb on - strand at 855.298 kb on - strand at 855.298 kb on - strand at 855.298 kb on - strand at 855.298 kb on - strand at 855.345 kb on + strand at 855.346 kb on - strand at 855.346 kb on - strand at 855.361 kb on + strand at 855.362 kb on - strand at 855.362 kb on - strand at 855.435 kb on + strand at 855.748 kb on + strand, within IAI47_04090 at 855.749 kb on - strand, within IAI47_04090 at 855.757 kb on + strand, within IAI47_04090 at 855.757 kb on + strand, within IAI47_04090 at 855.758 kb on - strand, within IAI47_04090 at 855.758 kb on - strand, within IAI47_04090 at 855.758 kb on - strand, within IAI47_04090 at 855.758 kb on - strand, within IAI47_04090 at 855.758 kb on - strand, within IAI47_04090 at 855.775 kb on - strand, within IAI47_04090 at 855.791 kb on - strand, within IAI47_04090 at 855.823 kb on + strand, within IAI47_04090 at 855.823 kb on + strand, within IAI47_04090 at 855.839 kb on + strand, within IAI47_04090 at 855.866 kb on + strand, within IAI47_04090 at 855.867 kb on - strand, within IAI47_04090 at 855.867 kb on - strand, within IAI47_04090 at 855.887 kb on - strand, within IAI47_04090 at 855.887 kb on - strand, within IAI47_04090 at 855.895 kb on + strand, within IAI47_04090 at 855.895 kb on + strand, within IAI47_04090 at 855.896 kb on - strand, within IAI47_04090 at 855.896 kb on - strand, within IAI47_04090 at 855.908 kb on - strand, within IAI47_04090 at 855.993 kb on + strand, within IAI47_04090 at 856.056 kb on + strand, within IAI47_04090 at 856.056 kb on + strand, within IAI47_04090 at 856.056 kb on + strand, within IAI47_04090 at 856.056 kb on + strand, within IAI47_04090 at 856.056 kb on + strand, within IAI47_04090 at 856.057 kb on - strand, within IAI47_04090 at 856.057 kb on - strand, within IAI47_04090 at 856.057 kb on - strand, within IAI47_04090 at 856.060 kb on + strand, within IAI47_04090 at 856.073 kb on - strand, within IAI47_04090 at 856.105 kb on + strand, within IAI47_04090 at 856.105 kb on + strand, within IAI47_04090 at 856.106 kb on - strand, within IAI47_04090 at 856.167 kb on + strand, within IAI47_04090 at 856.167 kb on + strand, within IAI47_04090 at 856.167 kb on + strand, within IAI47_04090 at 856.167 kb on + strand, within IAI47_04090 at 856.168 kb on - strand, within IAI47_04090 at 856.168 kb on - strand, within IAI47_04090 at 856.168 kb on - strand, within IAI47_04090 at 856.200 kb on + strand, within IAI47_04090 at 856.201 kb on - strand, within IAI47_04090
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3 remove 853,008 - IAI47_04080 0.30 -1.9 853,008 - IAI47_04080 0.30 -1.4 853,072 + IAI47_04080 0.35 -0.2 853,072 + IAI47_04080 0.35 +0.4 853,073 - IAI47_04080 0.35 +1.5 853,073 - IAI47_04080 0.35 +0.2 853,073 - IAI47_04080 0.35 -0.4 853,101 + IAI47_04080 0.37 -0.3 853,196 + IAI47_04080 0.44 +0.4 853,196 + IAI47_04080 0.44 -0.8 853,197 - IAI47_04080 0.44 +0.1 853,197 - IAI47_04080 0.44 -0.3 853,197 - IAI47_04080 0.44 +0.4 853,227 + IAI47_04080 0.46 +0.4 853,228 - IAI47_04080 0.46 -0.8 853,228 - IAI47_04080 0.46 +0.0 853,243 + IAI47_04080 0.48 +0.6 853,244 - IAI47_04080 0.48 +1.2 853,244 - IAI47_04080 0.48 -0.8 853,366 + IAI47_04080 0.57 +0.6 853,366 + IAI47_04080 0.57 -0.1 853,366 + IAI47_04080 0.57 -0.2 853,366 + IAI47_04080 0.57 -0.2 853,367 - IAI47_04080 0.57 +0.4 853,367 - IAI47_04080 0.57 -2.6 853,367 - IAI47_04080 0.57 -0.4 853,367 - IAI47_04080 0.57 -1.7 853,367 - IAI47_04080 0.57 +0.7 853,378 + IAI47_04080 0.57 -0.2 853,378 + IAI47_04080 0.57 -0.2 853,378 + IAI47_04080 0.57 -0.4 853,378 + IAI47_04080 0.57 -1.6 853,378 + IAI47_04080 0.57 +2.8 853,378 + IAI47_04080 0.57 +1.4 853,378 + IAI47_04080 0.57 +0.4 853,379 - IAI47_04080 0.58 -1.2 853,379 - IAI47_04080 0.58 -0.1 853,387 - IAI47_04080 0.58 +0.2 853,399 + IAI47_04080 0.59 +0.4 853,399 + IAI47_04080 0.59 -0.8 853,399 + IAI47_04080 0.59 +0.7 853,400 - IAI47_04080 0.59 +0.1 853,407 + IAI47_04080 0.60 -0.7 853,407 + IAI47_04080 0.60 +0.0 853,407 + IAI47_04080 0.60 +1.4 853,407 + IAI47_04080 0.60 +0.8 853,407 + IAI47_04080 0.60 +1.1 853,407 + IAI47_04080 0.60 -0.6 853,408 - IAI47_04080 0.60 +2.0 853,427 - IAI47_04080 0.61 -0.3 853,427 - IAI47_04080 0.61 -0.3 853,434 - IAI47_04080 0.62 -1.0 853,459 - IAI47_04080 0.63 +1.3 853,459 - IAI47_04080 0.63 -0.9 853,511 + IAI47_04080 0.67 -1.2 853,545 + IAI47_04080 0.70 +1.0 853,545 + IAI47_04080 0.70 -1.6 853,546 - IAI47_04080 0.70 +0.9 853,563 + IAI47_04080 0.71 -0.2 853,605 + IAI47_04080 0.74 -0.1 853,605 + IAI47_04080 0.74 -1.2 853,606 - IAI47_04080 0.74 +0.2 853,606 - IAI47_04080 0.74 +0.4 853,623 + IAI47_04080 0.75 +0.4 853,623 + IAI47_04080 0.75 +0.1 853,623 + IAI47_04080 0.75 +0.4 853,623 + IAI47_04080 0.75 -0.2 853,623 + IAI47_04080 0.75 -2.2 853,623 + IAI47_04080 0.75 +0.0 853,624 - IAI47_04080 0.76 +0.4 853,624 - IAI47_04080 0.76 -0.3 853,624 - IAI47_04080 0.76 +0.4 853,624 - IAI47_04080 0.76 -2.2 853,624 - IAI47_04080 0.76 -1.2 853,624 - IAI47_04080 0.76 +1.0 853,624 - IAI47_04080 0.76 -0.2 853,624 - IAI47_04080 0.76 -0.2 853,627 + IAI47_04080 0.76 -1.2 853,627 + IAI47_04080 0.76 -0.9 853,627 + IAI47_04080 0.76 +0.9 853,627 + IAI47_04080 0.76 +1.4 853,628 - IAI47_04080 0.76 +1.2 853,628 - IAI47_04080 0.76 -0.6 853,628 - IAI47_04080 0.76 -0.6 853,628 - IAI47_04080 0.76 -1.2 853,628 - IAI47_04080 0.76 +0.8 853,628 - IAI47_04080 0.76 -0.9 853,677 - IAI47_04080 0.79 +0.4 853,681 - IAI47_04080 0.80 +0.2 853,681 - IAI47_04080 0.80 -1.1 853,681 - IAI47_04080 0.80 +0.5 853,719 + IAI47_04080 0.83 +1.2 853,720 - IAI47_04080 0.83 +1.0 853,810 + IAI47_04080 0.89 +0.7 853,810 + IAI47_04080 0.89 -1.7 853,811 - IAI47_04080 0.89 +0.7 853,811 - IAI47_04080 0.89 -0.6 853,852 + +0.9 853,852 + +0.3 853,852 + -0.8 853,852 + +1.3 853,852 + -1.3 853,852 + -1.3 853,853 - -1.0 853,853 - +0.9 853,941 + +0.0 853,942 - +0.4 853,959 - -1.0 853,959 - -1.2 853,979 + +1.8 853,980 - +0.4 853,980 - +0.4 853,980 - +0.4 853,980 - -0.2 853,980 - +0.3 854,011 - -0.2 854,018 + -0.5 854,018 + +1.2 854,018 + -1.6 854,018 + +1.0 854,018 + +1.0 854,018 + -1.0 854,018 + -0.1 854,018 + -0.9 854,018 + -0.6 854,018 + -0.4 854,018 + -0.8 854,018 + -2.2 854,018 + +0.0 854,018 + +0.4 854,018 + -0.4 854,018 + +1.9 854,019 - -0.2 854,019 - -1.4 854,019 - -0.6 854,019 - +0.8 854,019 - +0.0 854,019 - -0.4 854,031 - -0.8 854,031 - +1.3 854,031 - +0.7 854,057 + -1.1 854,133 + IAI47_04085 0.13 -1.4 854,133 + IAI47_04085 0.13 -0.2 854,134 - IAI47_04085 0.13 -0.3 854,134 - IAI47_04085 0.13 +0.8 854,134 - IAI47_04085 0.13 -1.3 854,134 - IAI47_04085 0.13 -0.2 854,134 - IAI47_04085 0.13 +0.4 854,134 - IAI47_04085 0.13 +0.8 854,338 + IAI47_04085 0.29 -1.9 854,339 - IAI47_04085 0.29 -0.2 854,398 - IAI47_04085 0.33 -0.7 854,398 - IAI47_04085 0.33 +0.5 854,398 - IAI47_04085 0.33 -2.5 854,406 + IAI47_04085 0.34 +0.2 854,406 + IAI47_04085 0.34 +0.7 854,406 + IAI47_04085 0.34 +0.4 854,406 + IAI47_04085 0.34 -0.4 854,406 + IAI47_04085 0.34 +0.0 854,406 + IAI47_04085 0.34 -0.1 854,407 - IAI47_04085 0.34 -2.6 854,407 - IAI47_04085 0.34 +0.0 854,407 - IAI47_04085 0.34 +1.4 854,423 + IAI47_04085 0.35 +0.4 854,423 + IAI47_04085 0.35 +2.8 854,440 - IAI47_04085 0.36 +0.1 854,444 + IAI47_04085 0.36 +1.3 854,444 + IAI47_04085 0.36 +0.1 854,445 - IAI47_04085 0.37 -1.4 854,445 - IAI47_04085 0.37 +0.8 854,472 + IAI47_04085 0.39 +0.8 854,472 + IAI47_04085 0.39 +0.6 854,472 + IAI47_04085 0.39 +0.1 854,472 + IAI47_04085 0.39 -1.3 854,472 + IAI47_04085 0.39 +1.4 854,473 - IAI47_04085 0.39 +1.6 854,473 - IAI47_04085 0.39 +0.9 854,473 - IAI47_04085 0.39 +0.4 854,473 - IAI47_04085 0.39 -0.6 854,540 + IAI47_04085 0.44 -1.2 854,540 + IAI47_04085 0.44 +1.3 854,540 + IAI47_04085 0.44 -0.4 854,540 + IAI47_04085 0.44 -1.6 854,540 + IAI47_04085 0.44 -0.3 854,541 - IAI47_04085 0.44 +0.0 854,541 - IAI47_04085 0.44 +1.4 854,544 + IAI47_04085 0.44 +1.0 854,544 + IAI47_04085 0.44 +0.2 854,545 - IAI47_04085 0.44 -0.6 854,552 + IAI47_04085 0.44 +1.4 854,553 - IAI47_04085 0.45 +0.1 854,643 - IAI47_04085 0.51 -0.8 854,643 - 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Or see this region's nucleotide sequence