Strain Fitness in Pantoea sp. MT58 around IAI47_03155

Experiment: Ying_all64 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_03145 and IAI47_03150 are separated by 42 nucleotidesIAI47_03150 and IAI47_03155 are separated by 3 nucleotidesIAI47_03155 and IAI47_03160 are separated by 48 nucleotides IAI47_03145: IAI47_03145 - DUF1249 family protein, at 651,732 to 652,157 _03145 IAI47_03150: IAI47_03150 - 3',5'-cyclic-AMP phosphodiesterase, at 652,200 to 653,027 _03150 IAI47_03155: IAI47_03155 - esterase YqiA, at 653,031 to 653,612 _03155 IAI47_03160: IAI47_03160 - DNA topoisomerase IV subunit B, at 653,661 to 655,556 _03160 Position (kb) 653 654Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 652.038 kb on + strand, within IAI47_03145at 652.038 kb on + strand, within IAI47_03145at 652.038 kb on + strand, within IAI47_03145at 652.038 kb on + strand, within IAI47_03145at 652.039 kb on - strand, within IAI47_03145at 652.044 kb on + strand, within IAI47_03145at 652.044 kb on + strand, within IAI47_03145at 652.045 kb on - strand, within IAI47_03145at 652.050 kb on - strand, within IAI47_03145at 652.087 kb on + strand, within IAI47_03145at 652.087 kb on + strand, within IAI47_03145at 652.087 kb on + strand, within IAI47_03145at 652.087 kb on + strand, within IAI47_03145at 652.088 kb on - strand, within IAI47_03145at 652.116 kb on + strandat 652.162 kb on + strandat 652.162 kb on + strandat 652.162 kb on + strandat 652.162 kb on + strandat 652.162 kb on + strandat 652.163 kb on - strandat 652.163 kb on - strandat 652.163 kb on - strandat 652.163 kb on - strandat 652.163 kb on - strandat 652.163 kb on - strandat 652.164 kb on + strandat 652.164 kb on + strandat 652.164 kb on + strandat 652.165 kb on - strandat 652.165 kb on - strandat 652.165 kb on - strandat 652.165 kb on - strandat 652.165 kb on - strandat 652.172 kb on + strandat 652.214 kb on - strandat 652.324 kb on - strand, within IAI47_03150at 652.324 kb on - strand, within IAI47_03150at 652.324 kb on - strand, within IAI47_03150at 652.346 kb on + strand, within IAI47_03150at 652.365 kb on + strand, within IAI47_03150at 652.365 kb on + strand, within IAI47_03150at 652.365 kb on + strand, within IAI47_03150at 652.365 kb on + strand, within IAI47_03150at 652.366 kb on - strand, within IAI47_03150at 652.366 kb on - strand, within IAI47_03150at 652.409 kb on + strand, within IAI47_03150at 652.410 kb on - strand, within IAI47_03150at 652.419 kb on + strand, within IAI47_03150at 652.419 kb on + strand, within IAI47_03150at 652.419 kb on + strand, within IAI47_03150at 652.420 kb on - strand, within IAI47_03150at 652.420 kb on - strand, within IAI47_03150at 652.508 kb on + strand, within IAI47_03150at 652.508 kb on + strand, within IAI47_03150at 652.509 kb on - strand, within IAI47_03150at 652.509 kb on - strand, within IAI47_03150at 652.509 kb on - strand, within IAI47_03150at 652.509 kb on - strand, within IAI47_03150at 652.509 kb on - strand, within IAI47_03150at 652.509 kb on - strand, within IAI47_03150at 652.509 kb on - strand, within IAI47_03150at 652.509 kb on - strand, within IAI47_03150at 652.538 kb on + strand, within IAI47_03150at 652.538 kb on + strand, within IAI47_03150at 652.538 kb on + strand, within IAI47_03150at 652.538 kb on + strand, within IAI47_03150at 652.593 kb on + strand, within IAI47_03150at 652.593 kb on + strand, within IAI47_03150at 652.594 kb on - strand, within IAI47_03150at 652.594 kb on - strand, within IAI47_03150at 652.594 kb on - strand, within IAI47_03150at 652.623 kb on + strand, within IAI47_03150at 652.673 kb on + strand, within IAI47_03150at 652.673 kb on + strand, within IAI47_03150at 652.673 kb on + strand, within IAI47_03150at 652.673 kb on + strand, within IAI47_03150at 652.673 kb on + strand, within IAI47_03150at 652.673 kb on + strand, within IAI47_03150at 652.674 kb on - strand, within IAI47_03150at 652.674 kb on - strand, within IAI47_03150at 652.674 kb on - strand, within IAI47_03150at 652.674 kb on - strand, within IAI47_03150at 652.674 kb on - strand, within IAI47_03150at 652.682 kb on + strand, within IAI47_03150at 652.682 kb on + strand, within IAI47_03150at 652.768 kb on + strand, within IAI47_03150at 652.768 kb on + strand, within IAI47_03150at 652.769 kb on - strand, within IAI47_03150at 652.769 kb on - strand, within IAI47_03150at 652.808 kb on + strand, within IAI47_03150at 652.808 kb on + strand, within IAI47_03150at 652.808 kb on + strand, within IAI47_03150at 652.808 kb on + strand, within IAI47_03150at 652.826 kb on + strand, within IAI47_03150at 652.865 kb on + strand, within IAI47_03150at 652.865 kb on + strand, within IAI47_03150at 652.865 kb on + strand, within IAI47_03150at 652.866 kb on - strand, within IAI47_03150at 652.866 kb on - strand, within IAI47_03150at 652.866 kb on - strand, within IAI47_03150at 652.866 kb on - strand, within IAI47_03150at 652.866 kb on - strand, within IAI47_03150at 652.892 kb on + strand, within IAI47_03150at 652.892 kb on + strand, within IAI47_03150at 652.892 kb on + strand, within IAI47_03150at 652.892 kb on + strand, within IAI47_03150at 652.893 kb on - strand, within IAI47_03150at 652.937 kb on + strand, within IAI47_03150at 652.937 kb on + strand, within IAI47_03150at 652.937 kb on + strand, within IAI47_03150at 652.938 kb on - strand, within IAI47_03150at 652.938 kb on - strand, within IAI47_03150at 653.008 kb on + strandat 653.022 kb on + strandat 653.046 kb on + strandat 653.046 kb on + strandat 653.047 kb on - strandat 653.047 kb on - strandat 653.047 kb on - strandat 653.047 kb on - strandat 653.047 kb on - strandat 653.060 kb on + strandat 653.227 kb on + strand, within IAI47_03155at 653.227 kb on + strand, within IAI47_03155at 653.227 kb on + strand, within IAI47_03155at 653.228 kb on - strand, within IAI47_03155at 653.228 kb on - strand, within IAI47_03155at 653.247 kb on + strand, within IAI47_03155at 653.248 kb on - strand, within IAI47_03155at 653.248 kb on - strand, within IAI47_03155at 653.248 kb on - strand, within IAI47_03155at 653.250 kb on + strand, within IAI47_03155at 653.250 kb on + strand, within IAI47_03155at 653.250 kb on + strand, within IAI47_03155at 653.250 kb on + strand, within IAI47_03155at 653.250 kb on + strand, within IAI47_03155at 653.250 kb on + strand, within IAI47_03155at 653.250 kb on + strand, within IAI47_03155at 653.250 kb on + strand, within IAI47_03155at 653.250 kb on + strand, within IAI47_03155at 653.251 kb on - strand, within IAI47_03155at 653.251 kb on - strand, within IAI47_03155at 653.251 kb on - strand, within IAI47_03155at 653.251 kb on - strand, within IAI47_03155at 653.251 kb on - strand, within IAI47_03155at 653.251 kb on - strand, within IAI47_03155at 653.256 kb on - strand, within IAI47_03155at 653.276 kb on + strand, within IAI47_03155at 653.276 kb on + strand, within IAI47_03155at 653.276 kb on + strand, within IAI47_03155at 653.276 kb on + strand, within IAI47_03155at 653.276 kb on + strand, within IAI47_03155at 653.276 kb on + strand, within IAI47_03155at 653.276 kb on + strand, within IAI47_03155at 653.277 kb on - strand, within IAI47_03155at 653.277 kb on - strand, within IAI47_03155at 653.277 kb on - strand, within IAI47_03155at 653.358 kb on + strand, within IAI47_03155at 653.359 kb on - strand, within IAI47_03155at 653.373 kb on + strand, within IAI47_03155at 653.373 kb on + strand, within IAI47_03155at 653.373 kb on + strand, within IAI47_03155at 653.373 kb on + strand, within IAI47_03155at 653.373 kb on + strand, within IAI47_03155at 653.373 kb on + strand, within IAI47_03155at 653.373 kb on + strand, within IAI47_03155at 653.373 kb on + strand, within IAI47_03155at 653.373 kb on + strand, within IAI47_03155at 653.373 kb on + strand, within IAI47_03155at 653.373 kb on + strand, within IAI47_03155at 653.373 kb on + strand, within IAI47_03155at 653.373 kb on + strand, within IAI47_03155at 653.373 kb on + strand, within IAI47_03155at 653.373 kb on + strand, within IAI47_03155at 653.373 kb on + strand, within IAI47_03155at 653.373 kb on + strand, within IAI47_03155at 653.373 kb on + strand, within IAI47_03155at 653.373 kb on + strand, within IAI47_03155at 653.374 kb on - strand, within IAI47_03155at 653.374 kb on - strand, within IAI47_03155at 653.374 kb on - strand, within IAI47_03155at 653.374 kb on - strand, within IAI47_03155at 653.374 kb on - strand, within IAI47_03155at 653.374 kb on - strand, within IAI47_03155at 653.374 kb on - strand, within IAI47_03155at 653.374 kb on - strand, within IAI47_03155at 653.374 kb on - strand, within IAI47_03155at 653.374 kb on - strand, within IAI47_03155at 653.374 kb on - strand, within IAI47_03155at 653.374 kb on - strand, within IAI47_03155at 653.374 kb on - strand, within IAI47_03155at 653.374 kb on - strand, within IAI47_03155at 653.374 kb on - strand, within IAI47_03155at 653.374 kb on - strand, within IAI47_03155at 653.374 kb on - strand, within IAI47_03155at 653.374 kb on - strand, within IAI47_03155at 653.374 kb on - strand, within IAI47_03155at 653.380 kb on + strand, within IAI47_03155at 653.380 kb on + strand, within IAI47_03155at 653.380 kb on + strand, within IAI47_03155at 653.397 kb on + strand, within IAI47_03155at 653.397 kb on + strand, within IAI47_03155at 653.410 kb on + strand, within IAI47_03155at 653.410 kb on + strand, within IAI47_03155at 653.502 kb on + strand, within IAI47_03155at 653.502 kb on + strand, within IAI47_03155at 653.502 kb on + strand, within IAI47_03155at 653.502 kb on + strand, within IAI47_03155at 653.505 kb on + strand, within IAI47_03155at 653.505 kb on + strand, within IAI47_03155at 653.505 kb on + strand, within IAI47_03155at 653.505 kb on + strand, within IAI47_03155at 653.527 kb on + strand, within IAI47_03155at 653.614 kb on + strandat 653.614 kb on + strandat 653.614 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3
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652,038 + IAI47_03145 0.72 +1.6
652,038 + IAI47_03145 0.72 -0.3
652,038 + IAI47_03145 0.72 +0.7
652,038 + IAI47_03145 0.72 +1.7
652,039 - IAI47_03145 0.72 -1.1
652,044 + IAI47_03145 0.73 -0.5
652,044 + IAI47_03145 0.73 +0.7
652,045 - IAI47_03145 0.73 -0.8
652,050 - IAI47_03145 0.75 -2.1
652,087 + IAI47_03145 0.83 +2.0
652,087 + IAI47_03145 0.83 +1.5
652,087 + IAI47_03145 0.83 +1.5
652,087 + IAI47_03145 0.83 -0.1
652,088 - IAI47_03145 0.84 -3.4
652,116 + +0.5
652,162 + +2.6
652,162 + -1.4
652,162 + -0.6
652,162 + +1.5
652,162 + +1.6
652,163 - +0.1
652,163 - +0.8
652,163 - +1.5
652,163 - +1.5
652,163 - -0.7
652,163 - -0.4
652,164 + +0.7
652,164 + +3.3
652,164 + +2.3
652,165 - -0.1
652,165 - -0.5
652,165 - -0.5
652,165 - -0.7
652,165 - -0.9
652,172 + +1.0
652,214 - -0.5
652,324 - IAI47_03150 0.15 -0.9
652,324 - IAI47_03150 0.15 -0.2
652,324 - IAI47_03150 0.15 +0.3
652,346 + IAI47_03150 0.18 -0.3
652,365 + IAI47_03150 0.20 +0.4
652,365 + IAI47_03150 0.20 -0.3
652,365 + IAI47_03150 0.20 -3.0
652,365 + IAI47_03150 0.20 -1.9
652,366 - IAI47_03150 0.20 -0.6
652,366 - IAI47_03150 0.20 +0.7
652,409 + IAI47_03150 0.25 -0.9
652,410 - IAI47_03150 0.25 -0.6
652,419 + IAI47_03150 0.26 -1.0
652,419 + IAI47_03150 0.26 -1.6
652,419 + IAI47_03150 0.26 +1.3
652,420 - IAI47_03150 0.27 -0.4
652,420 - IAI47_03150 0.27 -1.4
652,508 + IAI47_03150 0.37 -1.4
652,508 + IAI47_03150 0.37 -2.5
652,509 - IAI47_03150 0.37 +0.4
652,509 - IAI47_03150 0.37 +0.9
652,509 - IAI47_03150 0.37 +0.0
652,509 - IAI47_03150 0.37 -1.6
652,509 - IAI47_03150 0.37 -0.9
652,509 - IAI47_03150 0.37 -2.1
652,509 - IAI47_03150 0.37 -3.3
652,509 - IAI47_03150 0.37 +1.0
652,538 + IAI47_03150 0.41 -1.6
652,538 + IAI47_03150 0.41 +0.4
652,538 + IAI47_03150 0.41 -1.6
652,538 + IAI47_03150 0.41 -2.7
652,593 + IAI47_03150 0.47 -0.8
652,593 + IAI47_03150 0.47 -0.6
652,594 - IAI47_03150 0.48 -0.6
652,594 - IAI47_03150 0.48 -2.2
652,594 - IAI47_03150 0.48 -0.6
652,623 + IAI47_03150 0.51 -0.6
652,673 + IAI47_03150 0.57 -1.4
652,673 + IAI47_03150 0.57 -3.4
652,673 + IAI47_03150 0.57 -1.6
652,673 + IAI47_03150 0.57 -1.9
652,673 + IAI47_03150 0.57 -1.5
652,673 + IAI47_03150 0.57 -2.4
652,674 - IAI47_03150 0.57 -0.8
652,674 - IAI47_03150 0.57 -2.0
652,674 - IAI47_03150 0.57 -2.0
652,674 - IAI47_03150 0.57 -1.7
652,674 - IAI47_03150 0.57 +0.4
652,682 + IAI47_03150 0.58 +0.4
652,682 + IAI47_03150 0.58 +0.2
652,768 + IAI47_03150 0.69 -3.1
652,768 + IAI47_03150 0.69 -0.3
652,769 - IAI47_03150 0.69 -1.3
652,769 - IAI47_03150 0.69 -0.7
652,808 + IAI47_03150 0.73 +0.2
652,808 + IAI47_03150 0.73 -3.1
652,808 + IAI47_03150 0.73 -2.1
652,808 + IAI47_03150 0.73 -0.1
652,826 + IAI47_03150 0.76 -0.1
652,865 + IAI47_03150 0.80 +1.0
652,865 + IAI47_03150 0.80 -1.4
652,865 + IAI47_03150 0.80 -1.9
652,866 - IAI47_03150 0.80 -0.1
652,866 - IAI47_03150 0.80 -1.7
652,866 - IAI47_03150 0.80 +0.4
652,866 - IAI47_03150 0.80 -1.1
652,866 - IAI47_03150 0.80 -0.9
652,892 + IAI47_03150 0.84 +0.1
652,892 + IAI47_03150 0.84 -0.6
652,892 + IAI47_03150 0.84 -1.0
652,892 + IAI47_03150 0.84 -0.6
652,893 - IAI47_03150 0.84 -1.8
652,937 + IAI47_03150 0.89 +2.8
652,937 + IAI47_03150 0.89 -0.9
652,937 + IAI47_03150 0.89 -1.1
652,938 - IAI47_03150 0.89 -1.1
652,938 - IAI47_03150 0.89 +1.0
653,008 + -1.6
653,022 + -0.6
653,046 + -3.0
653,046 + -1.1
653,047 - +1.8
653,047 - -0.6
653,047 - -0.3
653,047 - +0.4
653,047 - -2.1
653,060 + +1.4
653,227 + IAI47_03155 0.34 -2.7
653,227 + IAI47_03155 0.34 -0.4
653,227 + IAI47_03155 0.34 -0.2
653,228 - IAI47_03155 0.34 -2.1
653,228 - IAI47_03155 0.34 -2.4
653,247 + IAI47_03155 0.37 -1.9
653,248 - IAI47_03155 0.37 -0.3
653,248 - IAI47_03155 0.37 -0.4
653,248 - IAI47_03155 0.37 -1.0
653,250 + IAI47_03155 0.38 -1.7
653,250 + IAI47_03155 0.38 +1.6
653,250 + IAI47_03155 0.38 -0.6
653,250 + IAI47_03155 0.38 +0.4
653,250 + IAI47_03155 0.38 -1.7
653,250 + IAI47_03155 0.38 -0.3
653,250 + IAI47_03155 0.38 +0.8
653,250 + IAI47_03155 0.38 -1.0
653,250 + IAI47_03155 0.38 +0.3
653,251 - IAI47_03155 0.38 +0.6
653,251 - IAI47_03155 0.38 +1.9
653,251 - IAI47_03155 0.38 +1.7
653,251 - IAI47_03155 0.38 -0.5
653,251 - IAI47_03155 0.38 +0.3
653,251 - IAI47_03155 0.38 +0.4
653,256 - IAI47_03155 0.39 -0.2
653,276 + IAI47_03155 0.42 -0.5
653,276 + IAI47_03155 0.42 -2.1
653,276 + IAI47_03155 0.42 +0.4
653,276 + IAI47_03155 0.42 +0.4
653,276 + IAI47_03155 0.42 -1.4
653,276 + IAI47_03155 0.42 +0.4
653,276 + IAI47_03155 0.42 -1.7
653,277 - IAI47_03155 0.42 -2.1
653,277 - IAI47_03155 0.42 -2.1
653,277 - IAI47_03155 0.42 +0.8
653,358 + IAI47_03155 0.56 -0.7
653,359 - IAI47_03155 0.56 -0.1
653,373 + IAI47_03155 0.59 -0.3
653,373 + IAI47_03155 0.59 -1.1
653,373 + IAI47_03155 0.59 -3.1
653,373 + IAI47_03155 0.59 +2.0
653,373 + IAI47_03155 0.59 -1.1
653,373 + IAI47_03155 0.59 -1.9
653,373 + IAI47_03155 0.59 -1.7
653,373 + IAI47_03155 0.59 -1.1
653,373 + IAI47_03155 0.59 +0.4
653,373 + IAI47_03155 0.59 +0.6
653,373 + IAI47_03155 0.59 -1.1
653,373 + IAI47_03155 0.59 -1.4
653,373 + IAI47_03155 0.59 -3.1
653,373 + IAI47_03155 0.59 -2.1
653,373 + IAI47_03155 0.59 -0.8
653,373 + IAI47_03155 0.59 -1.6
653,373 + IAI47_03155 0.59 -2.4
653,373 + IAI47_03155 0.59 -0.5
653,373 + IAI47_03155 0.59 -0.6
653,374 - IAI47_03155 0.59 -0.5
653,374 - IAI47_03155 0.59 -0.1
653,374 - IAI47_03155 0.59 -0.6
653,374 - IAI47_03155 0.59 -0.6
653,374 - IAI47_03155 0.59 +0.9
653,374 - IAI47_03155 0.59 +0.2
653,374 - IAI47_03155 0.59 +1.0
653,374 - IAI47_03155 0.59 +0.9
653,374 - IAI47_03155 0.59 -1.4
653,374 - IAI47_03155 0.59 -1.1
653,374 - IAI47_03155 0.59 -1.2
653,374 - IAI47_03155 0.59 +1.0
653,374 - IAI47_03155 0.59 -1.6
653,374 - IAI47_03155 0.59 -0.6
653,374 - IAI47_03155 0.59 -2.1
653,374 - IAI47_03155 0.59 -1.7
653,374 - IAI47_03155 0.59 +1.5
653,374 - IAI47_03155 0.59 -1.6
653,374 - IAI47_03155 0.59 -1.4
653,380 + IAI47_03155 0.60 -1.1
653,380 + IAI47_03155 0.60 +0.4
653,380 + IAI47_03155 0.60 -2.0
653,397 + IAI47_03155 0.63 +0.7
653,397 + IAI47_03155 0.63 +2.6
653,410 + IAI47_03155 0.65 -1.7
653,410 + IAI47_03155 0.65 -0.6
653,502 + IAI47_03155 0.81 -1.0
653,502 + IAI47_03155 0.81 -1.3
653,502 + IAI47_03155 0.81 -1.6
653,502 + IAI47_03155 0.81 -0.9
653,505 + IAI47_03155 0.81 -0.6
653,505 + IAI47_03155 0.81 +0.4
653,505 + IAI47_03155 0.81 +1.4
653,505 + IAI47_03155 0.81 -0.6
653,527 + IAI47_03155 0.85 -2.3
653,614 + +1.4
653,614 + -0.6
653,614 + -1.3

Or see this region's nucleotide sequence