Experiment: Ying_all64 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_01490 and IAI47_01495 are separated by 47 nucleotides IAI47_01495 and IAI47_01500 are separated by 49 nucleotides IAI47_01500 and IAI47_01505 are separated by 323 nucleotides
IAI47_01490: IAI47_01490 - Gfo/Idh/MocA family oxidoreductase, at 325,974 to 326,984
_01490
IAI47_01495: IAI47_01495 - myo-inosose-2 dehydratase, at 327,032 to 327,928
_01495
IAI47_01500: IAI47_01500 - DcrB family lipoprotein, at 327,978 to 328,532
_01500
IAI47_01505: IAI47_01505 - 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter, at 328,856 to 329,521
_01505
Position (kb) 327
328
329 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 326.978 kb on + strand at 326.978 kb on + strand at 326.979 kb on - strand at 326.979 kb on - strand at 326.979 kb on - strand at 326.995 kb on + strand at 326.995 kb on + strand at 326.996 kb on - strand at 327.049 kb on - strand at 327.112 kb on + strand at 327.113 kb on - strand at 327.113 kb on - strand at 327.155 kb on - strand, within IAI47_01495 at 327.179 kb on + strand, within IAI47_01495 at 327.361 kb on + strand, within IAI47_01495 at 327.361 kb on + strand, within IAI47_01495 at 327.361 kb on + strand, within IAI47_01495 at 327.362 kb on - strand, within IAI47_01495 at 327.367 kb on + strand, within IAI47_01495 at 327.367 kb on + strand, within IAI47_01495 at 327.368 kb on - strand, within IAI47_01495 at 327.368 kb on - strand, within IAI47_01495 at 327.432 kb on + strand, within IAI47_01495 at 327.433 kb on - strand, within IAI47_01495 at 327.446 kb on + strand, within IAI47_01495 at 327.547 kb on + strand, within IAI47_01495 at 327.581 kb on + strand, within IAI47_01495 at 327.581 kb on + strand, within IAI47_01495 at 327.581 kb on + strand, within IAI47_01495 at 327.582 kb on - strand, within IAI47_01495 at 327.582 kb on - strand, within IAI47_01495 at 327.582 kb on - strand, within IAI47_01495 at 327.582 kb on - strand, within IAI47_01495 at 327.599 kb on + strand, within IAI47_01495 at 327.599 kb on + strand, within IAI47_01495 at 327.599 kb on + strand, within IAI47_01495 at 327.600 kb on - strand, within IAI47_01495 at 327.600 kb on - strand, within IAI47_01495 at 327.600 kb on - strand, within IAI47_01495 at 327.600 kb on - strand, within IAI47_01495 at 327.600 kb on - strand, within IAI47_01495 at 327.602 kb on + strand, within IAI47_01495 at 327.602 kb on + strand, within IAI47_01495 at 327.648 kb on - strand, within IAI47_01495 at 327.648 kb on - strand, within IAI47_01495 at 327.757 kb on + strand, within IAI47_01495 at 327.800 kb on - strand, within IAI47_01495 at 327.815 kb on + strand, within IAI47_01495 at 327.816 kb on - strand, within IAI47_01495 at 327.821 kb on + strand, within IAI47_01495 at 327.821 kb on + strand, within IAI47_01495 at 327.822 kb on - strand, within IAI47_01495 at 327.881 kb on + strand at 327.881 kb on + strand at 327.902 kb on + strand at 327.903 kb on - strand at 327.903 kb on - strand at 327.905 kb on - strand at 327.916 kb on + strand at 327.924 kb on + strand at 327.924 kb on + strand at 327.924 kb on + strand at 327.924 kb on + strand at 327.924 kb on + strand at 327.926 kb on + strand at 327.926 kb on + strand at 327.927 kb on - strand at 327.980 kb on - strand at 327.980 kb on - strand at 327.980 kb on - strand at 327.989 kb on + strand at 327.989 kb on + strand at 327.990 kb on - strand at 327.990 kb on - strand at 327.990 kb on - strand at 328.037 kb on + strand, within IAI47_01500 at 328.052 kb on + strand, within IAI47_01500 at 328.053 kb on - strand, within IAI47_01500 at 328.053 kb on - strand, within IAI47_01500 at 328.053 kb on - strand, within IAI47_01500 at 328.085 kb on + strand, within IAI47_01500 at 328.086 kb on - strand, within IAI47_01500 at 328.137 kb on - strand, within IAI47_01500 at 328.212 kb on - strand, within IAI47_01500 at 328.313 kb on - strand, within IAI47_01500 at 328.328 kb on + strand, within IAI47_01500 at 328.328 kb on + strand, within IAI47_01500 at 328.328 kb on + strand, within IAI47_01500 at 328.328 kb on + strand, within IAI47_01500 at 328.346 kb on + strand, within IAI47_01500 at 328.356 kb on - strand, within IAI47_01500 at 328.356 kb on - strand, within IAI47_01500 at 328.482 kb on + strand at 328.491 kb on + strand at 328.491 kb on + strand at 328.497 kb on + strand at 328.497 kb on + strand at 328.498 kb on - strand at 328.509 kb on + strand at 328.509 kb on + strand at 328.509 kb on + strand at 328.509 kb on + strand at 328.509 kb on + strand at 328.510 kb on - strand at 328.510 kb on - strand at 328.510 kb on - strand at 328.510 kb on - strand at 328.510 kb on - strand at 328.510 kb on - strand at 328.510 kb on - strand at 328.513 kb on + strand at 328.513 kb on + strand at 328.513 kb on + strand at 328.513 kb on + strand at 328.513 kb on + strand at 328.513 kb on + strand at 328.514 kb on - strand at 328.514 kb on - strand at 328.514 kb on - strand at 328.514 kb on - strand at 328.514 kb on - strand at 328.546 kb on + strand at 328.547 kb on - strand at 328.547 kb on - strand at 328.565 kb on + strand at 328.565 kb on + strand at 328.566 kb on - strand at 328.566 kb on - strand at 328.568 kb on + strand at 328.568 kb on + strand at 328.568 kb on + strand at 328.568 kb on + strand at 328.568 kb on + strand at 328.568 kb on + strand at 328.569 kb on - strand at 328.569 kb on - strand at 328.569 kb on - strand at 328.569 kb on - strand at 328.569 kb on - strand at 328.569 kb on - strand at 328.569 kb on - strand at 328.569 kb on - strand at 328.569 kb on - strand at 328.569 kb on - strand at 328.618 kb on + strand at 328.641 kb on - strand at 328.641 kb on - strand at 328.641 kb on - strand at 328.641 kb on - strand at 328.650 kb on + strand at 328.670 kb on + strand at 328.671 kb on - strand at 328.718 kb on - strand at 328.718 kb on - strand at 328.768 kb on + strand at 328.768 kb on + strand at 328.782 kb on + strand at 328.782 kb on + strand at 328.783 kb on - strand at 328.783 kb on - strand at 328.783 kb on - strand at 328.783 kb on - strand at 328.783 kb on - strand at 328.790 kb on - strand at 328.790 kb on - strand at 328.790 kb on - strand at 328.790 kb on - strand at 328.792 kb on + strand at 328.793 kb on - strand at 328.836 kb on + strand at 328.837 kb on - strand at 328.837 kb on - strand at 328.837 kb on - strand at 328.837 kb on - strand at 328.846 kb on + strand at 328.847 kb on - strand at 328.922 kb on + strand at 328.923 kb on - strand, within IAI47_01505 at 328.923 kb on - strand, within IAI47_01505 at 328.923 kb on - strand, within IAI47_01505 at 328.923 kb on - strand, within IAI47_01505 at 328.923 kb on - strand, within IAI47_01505 at 328.929 kb on + strand, within IAI47_01505 at 328.957 kb on + strand, within IAI47_01505 at 328.957 kb on + strand, within IAI47_01505 at 328.958 kb on - strand, within IAI47_01505 at 328.958 kb on - strand, within IAI47_01505 at 328.958 kb on - strand, within IAI47_01505 at 328.958 kb on - strand, within IAI47_01505 at 328.958 kb on - strand, within IAI47_01505 at 328.958 kb on - strand, within IAI47_01505 at 328.958 kb on - strand, within IAI47_01505 at 328.974 kb on + strand, within IAI47_01505 at 328.974 kb on + strand, within IAI47_01505 at 328.975 kb on - strand, within IAI47_01505 at 329.012 kb on - strand, within IAI47_01505 at 329.031 kb on + strand, within IAI47_01505 at 329.031 kb on + strand, within IAI47_01505 at 329.031 kb on + strand, within IAI47_01505 at 329.032 kb on - strand, within IAI47_01505 at 329.059 kb on + strand, within IAI47_01505 at 329.059 kb on + strand, within IAI47_01505 at 329.059 kb on + strand, within IAI47_01505 at 329.068 kb on + strand, within IAI47_01505 at 329.068 kb on + strand, within IAI47_01505 at 329.068 kb on + strand, within IAI47_01505 at 329.069 kb on - strand, within IAI47_01505 at 329.099 kb on + strand, within IAI47_01505 at 329.099 kb on + strand, within IAI47_01505 at 329.099 kb on + strand, within IAI47_01505 at 329.100 kb on - strand, within IAI47_01505 at 329.100 kb on - strand, within IAI47_01505 at 329.100 kb on - strand, within IAI47_01505 at 329.135 kb on + strand, within IAI47_01505 at 329.135 kb on + strand, within IAI47_01505 at 329.135 kb on + strand, within IAI47_01505 at 329.136 kb on - strand, within IAI47_01505 at 329.136 kb on - strand, within IAI47_01505 at 329.136 kb on - strand, within IAI47_01505 at 329.136 kb on - strand, within IAI47_01505 at 329.167 kb on - strand, within IAI47_01505 at 329.167 kb on - strand, within IAI47_01505 at 329.250 kb on + strand, within IAI47_01505 at 329.251 kb on - strand, within IAI47_01505 at 329.251 kb on - strand, within IAI47_01505 at 329.251 kb on - strand, within IAI47_01505 at 329.251 kb on - strand, within IAI47_01505 at 329.251 kb on - strand, within IAI47_01505 at 329.251 kb on - strand, within IAI47_01505 at 329.271 kb on + strand, within IAI47_01505 at 329.272 kb on - strand, within IAI47_01505 at 329.272 kb on - strand, within IAI47_01505 at 329.279 kb on - strand, within IAI47_01505 at 329.279 kb on - strand, within IAI47_01505 at 329.308 kb on + strand, within IAI47_01505 at 329.308 kb on + strand, within IAI47_01505 at 329.308 kb on + strand, within IAI47_01505 at 329.309 kb on - strand, within IAI47_01505 at 329.338 kb on + strand, within IAI47_01505 at 329.338 kb on + strand, within IAI47_01505 at 329.339 kb on - strand, within IAI47_01505 at 329.339 kb on - strand, within IAI47_01505 at 329.339 kb on - strand, within IAI47_01505 at 329.368 kb on + strand, within IAI47_01505 at 329.369 kb on - strand, within IAI47_01505 at 329.436 kb on + strand, within IAI47_01505 at 329.436 kb on + strand, within IAI47_01505 at 329.436 kb on + strand, within IAI47_01505 at 329.437 kb on - strand, within IAI47_01505 at 329.437 kb on - strand, within IAI47_01505 at 329.437 kb on - strand, within IAI47_01505 at 329.437 kb on - strand, within IAI47_01505 at 329.440 kb on + strand, within IAI47_01505 at 329.440 kb on + strand, within IAI47_01505 at 329.440 kb on + strand, within IAI47_01505 at 329.440 kb on + strand, within IAI47_01505 at 329.440 kb on + strand, within IAI47_01505 at 329.440 kb on + strand, within IAI47_01505 at 329.441 kb on - strand, within IAI47_01505 at 329.441 kb on - strand, within IAI47_01505 at 329.441 kb on - strand, within IAI47_01505 at 329.441 kb on - strand, within IAI47_01505 at 329.441 kb on - strand, within IAI47_01505 at 329.521 kb on + strand at 329.521 kb on + strand at 329.521 kb on + strand at 329.521 kb on + strand at 329.521 kb on + strand at 329.522 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3 remove 326,978 + +0.1 326,978 + +0.4 326,979 - -0.7 326,979 - -0.1 326,979 - +0.7 326,995 + +0.2 326,995 + +0.2 326,996 - +1.2 327,049 - +0.0 327,112 + -1.8 327,113 - -0.3 327,113 - +0.0 327,155 - IAI47_01495 0.14 +0.1 327,179 + IAI47_01495 0.16 -0.3 327,361 + IAI47_01495 0.37 -1.1 327,361 + IAI47_01495 0.37 -0.0 327,361 + IAI47_01495 0.37 -0.4 327,362 - IAI47_01495 0.37 +1.0 327,367 + IAI47_01495 0.37 +0.7 327,367 + IAI47_01495 0.37 +1.0 327,368 - IAI47_01495 0.37 +0.3 327,368 - IAI47_01495 0.37 -0.6 327,432 + IAI47_01495 0.45 -0.9 327,433 - IAI47_01495 0.45 +1.0 327,446 + IAI47_01495 0.46 -1.3 327,547 + IAI47_01495 0.57 +0.8 327,581 + IAI47_01495 0.61 +1.9 327,581 + IAI47_01495 0.61 +0.1 327,581 + IAI47_01495 0.61 -0.3 327,582 - IAI47_01495 0.61 +1.9 327,582 - IAI47_01495 0.61 +1.7 327,582 - IAI47_01495 0.61 -0.6 327,582 - IAI47_01495 0.61 +0.2 327,599 + IAI47_01495 0.63 -0.3 327,599 + IAI47_01495 0.63 +1.0 327,599 + IAI47_01495 0.63 +0.4 327,600 - IAI47_01495 0.63 +1.2 327,600 - IAI47_01495 0.63 -0.3 327,600 - IAI47_01495 0.63 +2.2 327,600 - IAI47_01495 0.63 -0.6 327,600 - IAI47_01495 0.63 +1.5 327,602 + IAI47_01495 0.64 +1.4 327,602 + IAI47_01495 0.64 +1.9 327,648 - IAI47_01495 0.69 +0.8 327,648 - IAI47_01495 0.69 +0.4 327,757 + IAI47_01495 0.81 -0.6 327,800 - IAI47_01495 0.86 -0.6 327,815 + IAI47_01495 0.87 +1.0 327,816 - IAI47_01495 0.87 -1.9 327,821 + IAI47_01495 0.88 +0.0 327,821 + IAI47_01495 0.88 +2.3 327,822 - IAI47_01495 0.88 -0.1 327,881 + +1.4 327,881 + +1.6 327,902 + -0.4 327,903 - -1.6 327,903 - -0.6 327,905 - -0.6 327,916 + +0.4 327,924 + -0.5 327,924 + -0.8 327,924 + -0.3 327,924 + +0.4 327,924 + +0.9 327,926 + +0.0 327,926 + -0.3 327,927 - +1.9 327,980 - -1.1 327,980 - +1.6 327,980 - -1.1 327,989 + +2.0 327,989 + +1.4 327,990 - +0.4 327,990 - -0.1 327,990 - -0.9 328,037 + IAI47_01500 0.11 +0.6 328,052 + IAI47_01500 0.13 +0.4 328,053 - IAI47_01500 0.14 -0.2 328,053 - IAI47_01500 0.14 -0.6 328,053 - IAI47_01500 0.14 -0.1 328,085 + IAI47_01500 0.19 -0.3 328,086 - IAI47_01500 0.19 -0.9 328,137 - IAI47_01500 0.29 -1.9 328,212 - IAI47_01500 0.42 +1.4 328,313 - IAI47_01500 0.60 +0.8 328,328 + IAI47_01500 0.63 -1.1 328,328 + IAI47_01500 0.63 -0.4 328,328 + IAI47_01500 0.63 -0.7 328,328 + IAI47_01500 0.63 -0.8 328,346 + IAI47_01500 0.66 -1.1 328,356 - IAI47_01500 0.68 -0.7 328,356 - IAI47_01500 0.68 +0.4 328,482 + +0.3 328,491 + -0.3 328,491 + -0.1 328,497 + +0.0 328,497 + -1.3 328,498 - +0.6 328,509 + -1.1 328,509 + -0.0 328,509 + +1.0 328,509 + -0.6 328,509 + +0.6 328,510 - +0.4 328,510 - -1.4 328,510 - -0.1 328,510 - -0.1 328,510 - +0.6 328,510 - -0.4 328,510 - +1.0 328,513 + -0.8 328,513 + -0.8 328,513 + +2.5 328,513 + -0.6 328,513 + -0.8 328,513 + -0.9 328,514 - -0.6 328,514 - +2.1 328,514 - -0.9 328,514 - -2.0 328,514 - -1.4 328,546 + -2.4 328,547 - -0.6 328,547 - +0.4 328,565 + -0.2 328,565 + +1.0 328,566 - +1.4 328,566 - -1.6 328,568 + +1.2 328,568 + +1.4 328,568 + +0.0 328,568 + -0.1 328,568 + +0.4 328,568 + +1.1 328,569 - -1.1 328,569 - -0.7 328,569 - -0.3 328,569 - +1.4 328,569 - -0.1 328,569 - -1.1 328,569 - +1.7 328,569 - +1.4 328,569 - +0.1 328,569 - +0.0 328,618 + +0.4 328,641 - -2.6 328,641 - +1.2 328,641 - +0.3 328,641 - +0.4 328,650 + +2.4 328,670 + -1.0 328,671 - +0.1 328,718 - -0.0 328,718 - -0.6 328,768 + -1.1 328,768 + +2.6 328,782 + +0.4 328,782 + -0.6 328,783 - +0.9 328,783 - -0.6 328,783 - -0.4 328,783 - +3.9 328,783 - +0.1 328,790 - -0.0 328,790 - -1.0 328,790 - -0.6 328,790 - +0.4 328,792 + -1.3 328,793 - +0.4 328,836 + +0.4 328,837 - +1.3 328,837 - -0.6 328,837 - -1.4 328,837 - -0.8 328,846 + +0.1 328,847 - +0.4 328,922 + -0.7 328,923 - IAI47_01505 0.10 -0.6 328,923 - IAI47_01505 0.10 +2.6 328,923 - IAI47_01505 0.10 +1.3 328,923 - IAI47_01505 0.10 -0.3 328,923 - IAI47_01505 0.10 +0.4 328,929 + IAI47_01505 0.11 -1.6 328,957 + IAI47_01505 0.15 +1.0 328,957 + IAI47_01505 0.15 -2.1 328,958 - IAI47_01505 0.15 -1.9 328,958 - IAI47_01505 0.15 -1.9 328,958 - IAI47_01505 0.15 +2.2 328,958 - IAI47_01505 0.15 +0.8 328,958 - IAI47_01505 0.15 +0.1 328,958 - IAI47_01505 0.15 +1.8 328,958 - IAI47_01505 0.15 +1.3 328,974 + IAI47_01505 0.18 +1.8 328,974 + IAI47_01505 0.18 -0.6 328,975 - IAI47_01505 0.18 +0.0 329,012 - IAI47_01505 0.23 +0.2 329,031 + IAI47_01505 0.26 -0.4 329,031 + IAI47_01505 0.26 +0.0 329,031 + IAI47_01505 0.26 +2.0 329,032 - IAI47_01505 0.26 +0.4 329,059 + IAI47_01505 0.30 -0.7 329,059 + IAI47_01505 0.30 -2.1 329,059 + IAI47_01505 0.30 +1.2 329,068 + IAI47_01505 0.32 -0.3 329,068 + IAI47_01505 0.32 +0.3 329,068 + IAI47_01505 0.32 +0.6 329,069 - IAI47_01505 0.32 -0.0 329,099 + IAI47_01505 0.36 +1.7 329,099 + IAI47_01505 0.36 -0.6 329,099 + IAI47_01505 0.36 -0.8 329,100 - IAI47_01505 0.37 -1.6 329,100 - IAI47_01505 0.37 +1.0 329,100 - IAI47_01505 0.37 -0.3 329,135 + IAI47_01505 0.42 -1.6 329,135 + IAI47_01505 0.42 +0.5 329,135 + IAI47_01505 0.42 +1.1 329,136 - IAI47_01505 0.42 +2.4 329,136 - IAI47_01505 0.42 +0.0 329,136 - IAI47_01505 0.42 +1.0 329,136 - IAI47_01505 0.42 +1.2 329,167 - IAI47_01505 0.47 -1.6 329,167 - IAI47_01505 0.47 +0.4 329,250 + IAI47_01505 0.59 +0.1 329,251 - IAI47_01505 0.59 -0.3 329,251 - IAI47_01505 0.59 -1.6 329,251 - IAI47_01505 0.59 -1.1 329,251 - IAI47_01505 0.59 +1.0 329,251 - IAI47_01505 0.59 -0.9 329,251 - IAI47_01505 0.59 -1.0 329,271 + IAI47_01505 0.62 -1.4 329,272 - IAI47_01505 0.62 +1.9 329,272 - IAI47_01505 0.62 +0.1 329,279 - IAI47_01505 0.64 +0.5 329,279 - IAI47_01505 0.64 +0.4 329,308 + IAI47_01505 0.68 -0.3 329,308 + IAI47_01505 0.68 +0.0 329,308 + IAI47_01505 0.68 +1.4 329,309 - IAI47_01505 0.68 -0.1 329,338 + IAI47_01505 0.72 -1.7 329,338 + IAI47_01505 0.72 +0.4 329,339 - IAI47_01505 0.73 +0.4 329,339 - IAI47_01505 0.73 -1.1 329,339 - IAI47_01505 0.73 -0.7 329,368 + IAI47_01505 0.77 -0.6 329,369 - IAI47_01505 0.77 -0.6 329,436 + IAI47_01505 0.87 -0.1 329,436 + IAI47_01505 0.87 -2.1 329,436 + IAI47_01505 0.87 +0.4 329,437 - IAI47_01505 0.87 -1.4 329,437 - IAI47_01505 0.87 +1.0 329,437 - IAI47_01505 0.87 -1.9 329,437 - IAI47_01505 0.87 +0.7 329,440 + IAI47_01505 0.88 +1.0 329,440 + IAI47_01505 0.88 +1.0 329,440 + IAI47_01505 0.88 -1.3 329,440 + IAI47_01505 0.88 -2.1 329,440 + IAI47_01505 0.88 -0.6 329,440 + IAI47_01505 0.88 +0.4 329,441 - IAI47_01505 0.88 +3.5 329,441 - IAI47_01505 0.88 +0.1 329,441 - IAI47_01505 0.88 +2.2 329,441 - IAI47_01505 0.88 +0.4 329,441 - IAI47_01505 0.88 -0.4 329,521 + -1.1 329,521 + -0.6 329,521 + +0.3 329,521 + +0.5 329,521 + +0.2 329,522 - -0.1
Or see this region's nucleotide sequence