Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS25615

Experiment: 1-octen-3-ol 0.6030326667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS25610 and AZOBR_RS25615 are separated by 926 nucleotidesAZOBR_RS25615 and AZOBR_RS25620 are separated by 78 nucleotidesAZOBR_RS25620 and AZOBR_RS25625 are separated by 63 nucleotides AZOBR_RS25610: AZOBR_RS25610 - NADPH-dependent FMN reductase, at 794,194 to 794,784 _RS25610 AZOBR_RS25615: AZOBR_RS25615 - chemotaxis protein, at 795,711 to 797,153 _RS25615 AZOBR_RS25620: AZOBR_RS25620 - 2-amino-thiazoline-4-carboxylic acid hydrolase, at 797,232 to 797,696 _RS25620 AZOBR_RS25625: AZOBR_RS25625 - leucine/isoleucine/valine transporter ATP-binding subunit, at 797,760 to 798,458 _RS25625 Position (kb) 795 796 797 798Strain fitness (log2 ratio) -2 -1 0 1 2at 794.932 kb on + strandat 795.005 kb on - strandat 795.005 kb on - strandat 795.039 kb on - strandat 795.039 kb on - strandat 795.086 kb on - strandat 795.115 kb on + strandat 795.147 kb on - strandat 795.155 kb on + strandat 795.155 kb on + strandat 795.198 kb on - strandat 795.290 kb on - strandat 795.424 kb on - strandat 795.477 kb on + strandat 795.477 kb on + strandat 795.478 kb on - strandat 795.478 kb on - strandat 795.478 kb on - strandat 795.535 kb on - strandat 795.535 kb on - strandat 795.535 kb on - strandat 795.535 kb on - strandat 795.939 kb on + strand, within AZOBR_RS25615at 795.939 kb on + strand, within AZOBR_RS25615at 795.940 kb on - strand, within AZOBR_RS25615at 795.940 kb on - strand, within AZOBR_RS25615at 796.588 kb on + strand, within AZOBR_RS25615at 796.589 kb on - strand, within AZOBR_RS25615at 797.645 kb on - strand, within AZOBR_RS25620at 797.782 kb on + strandat 797.783 kb on - strandat 797.783 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.6030326667 mM
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794,932 + -0.4
795,005 - +0.3
795,005 - -0.6
795,039 - +0.6
795,039 - +0.0
795,086 - +1.2
795,115 + -0.1
795,147 - +0.3
795,155 + +0.6
795,155 + +0.6
795,198 - -0.7
795,290 - +1.9
795,424 - -0.2
795,477 + +0.1
795,477 + -1.0
795,478 - +0.5
795,478 - -1.6
795,478 - +1.9
795,535 - -1.8
795,535 - -0.9
795,535 - +1.9
795,535 - +0.3
795,939 + AZOBR_RS25615 0.16 -0.1
795,939 + AZOBR_RS25615 0.16 -0.1
795,940 - AZOBR_RS25615 0.16 -0.6
795,940 - AZOBR_RS25615 0.16 -0.2
796,588 + AZOBR_RS25615 0.61 +0.5
796,589 - AZOBR_RS25615 0.61 -0.6
797,645 - AZOBR_RS25620 0.89 -0.6
797,782 + -0.1
797,783 - -0.7
797,783 - +0.0

Or see this region's nucleotide sequence