Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS21140

Experiment: 1-octen-3-ol 0.6030326667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS21135 and AZOBR_RS21140 are separated by 292 nucleotidesAZOBR_RS21140 and AZOBR_RS21145 are separated by 164 nucleotides AZOBR_RS21135: AZOBR_RS21135 - histidine kinase, at 1,521,558 to 1,523,324 _RS21135 AZOBR_RS21140: AZOBR_RS21140 - C4-dicarboxylate ABC transporter, at 1,523,617 to 1,524,918 _RS21140 AZOBR_RS21145: AZOBR_RS21145 - NADP-dependent malic enzyme, at 1,525,083 to 1,527,401 _RS21145 Position (kb) 1523 1524 1525Strain fitness (log2 ratio) -2 -1 0 1 2at 1522.843 kb on + strand, within AZOBR_RS21135at 1522.846 kb on + strand, within AZOBR_RS21135at 1522.847 kb on - strand, within AZOBR_RS21135at 1522.919 kb on - strand, within AZOBR_RS21135at 1523.008 kb on + strand, within AZOBR_RS21135at 1523.008 kb on + strand, within AZOBR_RS21135at 1523.009 kb on - strand, within AZOBR_RS21135at 1523.009 kb on - strand, within AZOBR_RS21135at 1523.653 kb on + strandat 1523.654 kb on - strandat 1523.875 kb on + strand, within AZOBR_RS21140at 1523.875 kb on + strand, within AZOBR_RS21140at 1523.875 kb on + strand, within AZOBR_RS21140at 1523.904 kb on - strand, within AZOBR_RS21140at 1523.904 kb on - strand, within AZOBR_RS21140at 1523.995 kb on + strand, within AZOBR_RS21140at 1523.995 kb on + strand, within AZOBR_RS21140at 1523.995 kb on + strand, within AZOBR_RS21140at 1524.269 kb on - strand, within AZOBR_RS21140at 1524.316 kb on + strand, within AZOBR_RS21140at 1524.316 kb on + strand, within AZOBR_RS21140at 1524.370 kb on + strand, within AZOBR_RS21140at 1524.370 kb on + strand, within AZOBR_RS21140at 1524.371 kb on - strand, within AZOBR_RS21140at 1524.560 kb on - strand, within AZOBR_RS21140at 1524.877 kb on + strandat 1525.014 kb on + strandat 1525.082 kb on + strandat 1525.082 kb on + strandat 1525.082 kb on + strandat 1525.083 kb on - strandat 1525.083 kb on - strandat 1525.116 kb on + strandat 1525.117 kb on - strandat 1525.789 kb on - strand, within AZOBR_RS21145at 1525.789 kb on - strand, within AZOBR_RS21145at 1525.789 kb on - strand, within AZOBR_RS21145

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.6030326667 mM
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1,522,843 + AZOBR_RS21135 0.73 -0.7
1,522,846 + AZOBR_RS21135 0.73 -1.8
1,522,847 - AZOBR_RS21135 0.73 +0.1
1,522,919 - AZOBR_RS21135 0.77 -0.4
1,523,008 + AZOBR_RS21135 0.82 -1.2
1,523,008 + AZOBR_RS21135 0.82 -0.9
1,523,009 - AZOBR_RS21135 0.82 -0.0
1,523,009 - AZOBR_RS21135 0.82 -2.0
1,523,653 + +0.1
1,523,654 - +0.9
1,523,875 + AZOBR_RS21140 0.20 -0.6
1,523,875 + AZOBR_RS21140 0.20 +0.6
1,523,875 + AZOBR_RS21140 0.20 -0.1
1,523,904 - AZOBR_RS21140 0.22 -0.2
1,523,904 - AZOBR_RS21140 0.22 +1.5
1,523,995 + AZOBR_RS21140 0.29 +0.1
1,523,995 + AZOBR_RS21140 0.29 +1.9
1,523,995 + AZOBR_RS21140 0.29 -0.1
1,524,269 - AZOBR_RS21140 0.50 +1.9
1,524,316 + AZOBR_RS21140 0.54 +0.4
1,524,316 + AZOBR_RS21140 0.54 +0.6
1,524,370 + AZOBR_RS21140 0.58 +0.3
1,524,370 + AZOBR_RS21140 0.58 -1.1
1,524,371 - AZOBR_RS21140 0.58 +0.9
1,524,560 - AZOBR_RS21140 0.72 +0.9
1,524,877 + -0.1
1,525,014 + +0.7
1,525,082 + -1.2
1,525,082 + -0.4
1,525,082 + +1.4
1,525,083 - -0.1
1,525,083 - +0.1
1,525,116 + +0.1
1,525,117 - -0.1
1,525,789 - AZOBR_RS21145 0.30 -1.2
1,525,789 - AZOBR_RS21145 0.30 +1.9
1,525,789 - AZOBR_RS21145 0.30 +0.9

Or see this region's nucleotide sequence