Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS09275

Experiment: 1-octen-3-ol 0.6030326667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS09270 and AZOBR_RS09275 are separated by 110 nucleotidesAZOBR_RS09275 and AZOBR_RS09280 are separated by 38 nucleotides AZOBR_RS09270: AZOBR_RS09270 - conserved membrane protein of unknown function, at 1,935,445 to 1,937,028 _RS09270 AZOBR_RS09275: AZOBR_RS09275 - ATP-binding protein, at 1,937,139 to 1,938,248 _RS09275 AZOBR_RS09280: AZOBR_RS09280 - Fur family transcriptional regulator, at 1,938,287 to 1,938,793 _RS09280 Position (kb) 1937 1938 1939Strain fitness (log2 ratio) -1 0 1at 1936.259 kb on - strand, within AZOBR_RS09270at 1936.366 kb on + strand, within AZOBR_RS09270at 1936.366 kb on + strand, within AZOBR_RS09270at 1936.630 kb on + strand, within AZOBR_RS09270at 1936.630 kb on + strand, within AZOBR_RS09270at 1936.630 kb on + strand, within AZOBR_RS09270at 1936.630 kb on + strand, within AZOBR_RS09270at 1936.804 kb on + strand, within AZOBR_RS09270at 1936.831 kb on + strand, within AZOBR_RS09270at 1936.831 kb on + strand, within AZOBR_RS09270at 1936.831 kb on + strand, within AZOBR_RS09270at 1936.894 kb on + strandat 1936.894 kb on + strandat 1936.924 kb on + strandat 1936.930 kb on + strandat 1936.930 kb on + strandat 1936.930 kb on + strandat 1936.931 kb on - strandat 1936.931 kb on - strandat 1937.003 kb on - strandat 1937.014 kb on + strandat 1937.014 kb on + strandat 1937.015 kb on - strandat 1937.647 kb on + strand, within AZOBR_RS09275at 1937.647 kb on + strand, within AZOBR_RS09275at 1937.647 kb on + strand, within AZOBR_RS09275at 1937.648 kb on - strand, within AZOBR_RS09275at 1938.486 kb on + strand, within AZOBR_RS09280at 1938.486 kb on + strand, within AZOBR_RS09280at 1938.550 kb on - strand, within AZOBR_RS09280at 1938.610 kb on - strand, within AZOBR_RS09280

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.6030326667 mM
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1,936,259 - AZOBR_RS09270 0.51 -1.1
1,936,366 + AZOBR_RS09270 0.58 -0.2
1,936,366 + AZOBR_RS09270 0.58 -1.4
1,936,630 + AZOBR_RS09270 0.75 +0.6
1,936,630 + AZOBR_RS09270 0.75 +0.6
1,936,630 + AZOBR_RS09270 0.75 -0.3
1,936,630 + AZOBR_RS09270 0.75 +0.7
1,936,804 + AZOBR_RS09270 0.86 -0.2
1,936,831 + AZOBR_RS09270 0.88 -0.1
1,936,831 + AZOBR_RS09270 0.88 -1.4
1,936,831 + AZOBR_RS09270 0.88 +0.3
1,936,894 + -1.0
1,936,894 + -0.8
1,936,924 + +0.6
1,936,930 + +0.2
1,936,930 + -0.7
1,936,930 + -0.3
1,936,931 - +0.4
1,936,931 - +0.2
1,937,003 - +0.4
1,937,014 + -0.4
1,937,014 + +0.0
1,937,015 - -0.2
1,937,647 + AZOBR_RS09275 0.46 +0.2
1,937,647 + AZOBR_RS09275 0.46 +1.0
1,937,647 + AZOBR_RS09275 0.46 +0.4
1,937,648 - AZOBR_RS09275 0.46 +0.6
1,938,486 + AZOBR_RS09280 0.39 +0.0
1,938,486 + AZOBR_RS09280 0.39 -0.3
1,938,550 - AZOBR_RS09280 0.52 -0.8
1,938,610 - AZOBR_RS09280 0.64 -0.2

Or see this region's nucleotide sequence