Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS08195

Experiment: 1-octen-3-ol 0.6030326667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS08185 and AZOBR_RS08190 are separated by 39 nucleotidesAZOBR_RS08190 and AZOBR_RS08195 are separated by 229 nucleotides AZOBR_RS08185: AZOBR_RS08185 - PhoU family transcriptional regulator, at 1,725,042 to 1,725,752 _RS08185 AZOBR_RS08190: AZOBR_RS08190 - putative conserved cation transport regulator, at 1,725,792 to 1,726,016 _RS08190 AZOBR_RS08195: AZOBR_RS08195 - hypothetical protein, at 1,726,246 to 1,726,488 _RS08195 Position (kb) 1726 1727Strain fitness (log2 ratio) -1 0 1 2 3at 1725.465 kb on + strand, within AZOBR_RS08185at 1725.466 kb on - strand, within AZOBR_RS08185at 1725.531 kb on + strand, within AZOBR_RS08185at 1725.531 kb on + strand, within AZOBR_RS08185at 1725.532 kb on - strand, within AZOBR_RS08185at 1725.561 kb on + strand, within AZOBR_RS08185at 1725.561 kb on + strand, within AZOBR_RS08185at 1725.561 kb on + strand, within AZOBR_RS08185at 1725.562 kb on - strand, within AZOBR_RS08185at 1725.562 kb on - strand, within AZOBR_RS08185at 1725.672 kb on + strand, within AZOBR_RS08185at 1725.672 kb on + strand, within AZOBR_RS08185at 1725.673 kb on - strand, within AZOBR_RS08185at 1725.673 kb on - strand, within AZOBR_RS08185at 1725.673 kb on - strand, within AZOBR_RS08185at 1725.673 kb on - strand, within AZOBR_RS08185at 1725.729 kb on + strandat 1725.729 kb on + strandat 1725.729 kb on + strandat 1725.730 kb on - strandat 1725.750 kb on + strandat 1725.750 kb on + strandat 1725.751 kb on - strandat 1725.830 kb on - strand, within AZOBR_RS08190at 1725.860 kb on + strand, within AZOBR_RS08190at 1725.861 kb on - strand, within AZOBR_RS08190at 1725.861 kb on - strand, within AZOBR_RS08190at 1726.034 kb on + strandat 1726.035 kb on - strandat 1726.054 kb on + strandat 1726.057 kb on + strandat 1726.057 kb on + strandat 1726.057 kb on + strandat 1726.057 kb on + strandat 1726.058 kb on - strandat 1726.058 kb on - strandat 1726.058 kb on - strandat 1726.111 kb on - strandat 1726.239 kb on - strandat 1726.909 kb on + strandat 1727.064 kb on + strandat 1727.064 kb on + strandat 1727.064 kb on + strandat 1727.064 kb on + strandat 1727.104 kb on - strandat 1727.273 kb on + strandat 1727.274 kb on - strandat 1727.341 kb on + strandat 1727.341 kb on + strandat 1727.342 kb on - strandat 1727.342 kb on - strandat 1727.375 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.6030326667 mM
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1,725,465 + AZOBR_RS08185 0.59 +0.1
1,725,466 - AZOBR_RS08185 0.60 -1.4
1,725,531 + AZOBR_RS08185 0.69 -0.8
1,725,531 + AZOBR_RS08185 0.69 -0.1
1,725,532 - AZOBR_RS08185 0.69 +0.3
1,725,561 + AZOBR_RS08185 0.73 +0.4
1,725,561 + AZOBR_RS08185 0.73 +0.3
1,725,561 + AZOBR_RS08185 0.73 +0.2
1,725,562 - AZOBR_RS08185 0.73 +1.9
1,725,562 - AZOBR_RS08185 0.73 +1.9
1,725,672 + AZOBR_RS08185 0.89 +0.2
1,725,672 + AZOBR_RS08185 0.89 +0.2
1,725,673 - AZOBR_RS08185 0.89 +1.4
1,725,673 - AZOBR_RS08185 0.89 -0.3
1,725,673 - AZOBR_RS08185 0.89 -0.6
1,725,673 - AZOBR_RS08185 0.89 +0.1
1,725,729 + -0.6
1,725,729 + -0.1
1,725,729 + +1.3
1,725,730 - -0.2
1,725,750 + -0.8
1,725,750 + +0.3
1,725,751 - -0.2
1,725,830 - AZOBR_RS08190 0.17 -0.2
1,725,860 + AZOBR_RS08190 0.30 +0.1
1,725,861 - AZOBR_RS08190 0.31 +0.1
1,725,861 - AZOBR_RS08190 0.31 -1.6
1,726,034 + +0.1
1,726,035 - +1.2
1,726,054 + -0.3
1,726,057 + +0.6
1,726,057 + -0.3
1,726,057 + +0.4
1,726,057 + +0.1
1,726,058 - -0.6
1,726,058 - -1.1
1,726,058 - +0.3
1,726,111 - -0.3
1,726,239 - -0.9
1,726,909 + +0.9
1,727,064 + +1.9
1,727,064 + +1.9
1,727,064 + +0.9
1,727,064 + -1.2
1,727,104 - -0.1
1,727,273 + +2.9
1,727,274 - -1.0
1,727,341 + -0.5
1,727,341 + -0.6
1,727,342 - -0.4
1,727,342 - +0.9
1,727,375 + +0.4

Or see this region's nucleotide sequence