Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS12065

Experiment: 1-octen-3-ol 0.6030326667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS12060 and AZOBR_RS12065 are separated by 172 nucleotidesAZOBR_RS12065 and AZOBR_RS12070 are separated by 449 nucleotides AZOBR_RS12060: AZOBR_RS12060 - hypothetical protein, at 2,534,980 to 2,536,155 _RS12060 AZOBR_RS12065: AZOBR_RS12065 - hypothetical protein, at 2,536,328 to 2,536,858 _RS12065 AZOBR_RS12070: AZOBR_RS12070 - peptidoglycan-binding protein, at 2,537,308 to 2,538,474 _RS12070 Position (kb) 2536 2537Strain fitness (log2 ratio) -1 0 1at 2535.654 kb on - strand, within AZOBR_RS12060at 2535.877 kb on + strand, within AZOBR_RS12060at 2535.915 kb on + strand, within AZOBR_RS12060at 2535.916 kb on - strand, within AZOBR_RS12060at 2536.284 kb on + strandat 2536.384 kb on - strand, within AZOBR_RS12065at 2536.482 kb on + strand, within AZOBR_RS12065at 2536.482 kb on + strand, within AZOBR_RS12065at 2536.483 kb on - strand, within AZOBR_RS12065at 2537.039 kb on - strandat 2537.142 kb on - strandat 2537.200 kb on + strandat 2537.203 kb on + strandat 2537.277 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.6030326667 mM
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2,535,654 - AZOBR_RS12060 0.57 +1.0
2,535,877 + AZOBR_RS12060 0.76 -0.7
2,535,915 + AZOBR_RS12060 0.80 -0.2
2,535,916 - AZOBR_RS12060 0.80 +0.7
2,536,284 + +1.0
2,536,384 - AZOBR_RS12065 0.11 -0.4
2,536,482 + AZOBR_RS12065 0.29 +1.1
2,536,482 + AZOBR_RS12065 0.29 -0.1
2,536,483 - AZOBR_RS12065 0.29 -0.1
2,537,039 - +0.1
2,537,142 - -0.6
2,537,200 + +0.4
2,537,203 + -0.1
2,537,277 + +0.1

Or see this region's nucleotide sequence