Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS06200

Experiment: 1-octen-3-ol 0.6030326667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS06195 and AZOBR_RS06200 are separated by 320 nucleotidesAZOBR_RS06200 and AZOBR_RS06205 are separated by 185 nucleotidesAZOBR_RS06205 and AZOBR_RS06210 are separated by 172 nucleotides AZOBR_RS06195: AZOBR_RS06195 - hypothetical protein, at 1,312,496 to 1,313,113 _RS06195 AZOBR_RS06200: AZOBR_RS06200 - NAD(P)H quinone oxidoreductase, at 1,313,434 to 1,314,441 _RS06200 AZOBR_RS06205: AZOBR_RS06205 - hypothetical protein, at 1,314,627 to 1,314,815 _RS06205 AZOBR_RS06210: AZOBR_RS06210 - membrane protein, at 1,314,988 to 1,315,827 _RS06210 Position (kb) 1313 1314 1315Strain fitness (log2 ratio) -1 0 1 2 3at 1313.173 kb on - strandat 1313.230 kb on - strandat 1313.759 kb on + strand, within AZOBR_RS06200at 1313.759 kb on + strand, within AZOBR_RS06200at 1313.760 kb on - strand, within AZOBR_RS06200at 1313.760 kb on - strand, within AZOBR_RS06200at 1313.847 kb on - strand, within AZOBR_RS06200at 1313.847 kb on - strand, within AZOBR_RS06200at 1314.128 kb on + strand, within AZOBR_RS06200at 1314.711 kb on + strandat 1314.712 kb on - strand, within AZOBR_RS06205at 1314.912 kb on + strandat 1314.912 kb on + strandat 1314.912 kb on + strandat 1314.912 kb on + strandat 1314.912 kb on + strandat 1314.913 kb on - strandat 1314.913 kb on - strandat 1314.913 kb on - strandat 1314.913 kb on - strandat 1314.913 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.6030326667 mM
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1,313,173 - +3.0
1,313,230 - -0.9
1,313,759 + AZOBR_RS06200 0.32 +0.1
1,313,759 + AZOBR_RS06200 0.32 +0.3
1,313,760 - AZOBR_RS06200 0.32 +0.2
1,313,760 - AZOBR_RS06200 0.32 -0.7
1,313,847 - AZOBR_RS06200 0.41 +0.2
1,313,847 - AZOBR_RS06200 0.41 +1.1
1,314,128 + AZOBR_RS06200 0.69 -0.1
1,314,711 + -0.3
1,314,712 - AZOBR_RS06205 0.45 +0.2
1,314,912 + -0.0
1,314,912 + +0.4
1,314,912 + +0.1
1,314,912 + -0.3
1,314,912 + -0.0
1,314,913 - -0.0
1,314,913 - -0.6
1,314,913 - -0.2
1,314,913 - -0.1
1,314,913 - -0.1

Or see this region's nucleotide sequence