Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS03375

Experiment: 1-octen-3-ol 0.6030326667 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS03370 and AZOBR_RS03375 are separated by 13 nucleotidesAZOBR_RS03375 and AZOBR_RS03380 are separated by 53 nucleotides AZOBR_RS03370: AZOBR_RS03370 - GDP-L-fucose synthase, at 714,196 to 715,176 _RS03370 AZOBR_RS03375: AZOBR_RS03375 - NAD-dependent dehydratase, at 715,190 to 716,191 _RS03375 AZOBR_RS03380: AZOBR_RS03380 - UDP-glucose 6-dehydrogenase, at 716,245 to 717,600 _RS03380 Position (kb) 715 716 717Strain fitness (log2 ratio) -2 -1 0 1at 714.275 kb on + strandat 714.276 kb on - strandat 714.405 kb on - strand, within AZOBR_RS03370at 714.491 kb on + strand, within AZOBR_RS03370at 714.491 kb on + strand, within AZOBR_RS03370at 714.492 kb on - strand, within AZOBR_RS03370at 714.492 kb on - strand, within AZOBR_RS03370at 714.537 kb on - strand, within AZOBR_RS03370at 714.674 kb on + strand, within AZOBR_RS03370at 714.674 kb on + strand, within AZOBR_RS03370at 714.767 kb on + strand, within AZOBR_RS03370at 714.768 kb on - strand, within AZOBR_RS03370at 715.001 kb on + strand, within AZOBR_RS03370at 715.001 kb on + strand, within AZOBR_RS03370at 715.002 kb on - strand, within AZOBR_RS03370at 715.002 kb on - strand, within AZOBR_RS03370at 715.192 kb on - strandat 715.452 kb on + strand, within AZOBR_RS03375at 715.452 kb on + strand, within AZOBR_RS03375at 715.452 kb on + strand, within AZOBR_RS03375at 715.452 kb on + strand, within AZOBR_RS03375at 715.452 kb on + strand, within AZOBR_RS03375at 715.452 kb on + strand, within AZOBR_RS03375at 715.452 kb on + strand, within AZOBR_RS03375at 715.453 kb on - strand, within AZOBR_RS03375at 715.453 kb on - strand, within AZOBR_RS03375at 715.453 kb on - strand, within AZOBR_RS03375at 715.453 kb on - strand, within AZOBR_RS03375at 715.651 kb on - strand, within AZOBR_RS03375at 715.743 kb on + strand, within AZOBR_RS03375at 715.750 kb on - strand, within AZOBR_RS03375at 715.822 kb on - strand, within AZOBR_RS03375at 715.936 kb on - strand, within AZOBR_RS03375at 715.936 kb on - strand, within AZOBR_RS03375at 715.936 kb on - strand, within AZOBR_RS03375at 716.179 kb on - strandat 716.351 kb on + strandat 716.351 kb on + strandat 716.351 kb on + strandat 716.352 kb on - strandat 716.352 kb on - strandat 716.352 kb on - strandat 716.352 kb on - strandat 716.957 kb on + strand, within AZOBR_RS03380at 716.957 kb on + strand, within AZOBR_RS03380at 716.958 kb on - strand, within AZOBR_RS03380at 716.958 kb on - strand, within AZOBR_RS03380at 716.958 kb on - strand, within AZOBR_RS03380

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.6030326667 mM
remove
714,275 + -0.0
714,276 - -0.1
714,405 - AZOBR_RS03370 0.21 +0.2
714,491 + AZOBR_RS03370 0.30 -0.4
714,491 + AZOBR_RS03370 0.30 -0.7
714,492 - AZOBR_RS03370 0.30 -0.5
714,492 - AZOBR_RS03370 0.30 -0.4
714,537 - AZOBR_RS03370 0.35 -0.1
714,674 + AZOBR_RS03370 0.49 -0.2
714,674 + AZOBR_RS03370 0.49 -0.6
714,767 + AZOBR_RS03370 0.58 -0.7
714,768 - AZOBR_RS03370 0.58 -1.8
715,001 + AZOBR_RS03370 0.82 +0.0
715,001 + AZOBR_RS03370 0.82 +0.6
715,002 - AZOBR_RS03370 0.82 -0.4
715,002 - AZOBR_RS03370 0.82 +0.2
715,192 - -0.8
715,452 + AZOBR_RS03375 0.26 +0.2
715,452 + AZOBR_RS03375 0.26 +0.5
715,452 + AZOBR_RS03375 0.26 +0.6
715,452 + AZOBR_RS03375 0.26 -0.1
715,452 + AZOBR_RS03375 0.26 +1.0
715,452 + AZOBR_RS03375 0.26 -0.0
715,452 + AZOBR_RS03375 0.26 -0.0
715,453 - AZOBR_RS03375 0.26 +0.1
715,453 - AZOBR_RS03375 0.26 -1.8
715,453 - AZOBR_RS03375 0.26 -0.7
715,453 - AZOBR_RS03375 0.26 -0.9
715,651 - AZOBR_RS03375 0.46 -0.3
715,743 + AZOBR_RS03375 0.55 +0.5
715,750 - AZOBR_RS03375 0.56 -0.2
715,822 - AZOBR_RS03375 0.63 -0.6
715,936 - AZOBR_RS03375 0.74 -0.5
715,936 - AZOBR_RS03375 0.74 -0.3
715,936 - AZOBR_RS03375 0.74 +0.1
716,179 - -0.5
716,351 + +0.3
716,351 + +0.1
716,351 + -1.5
716,352 - -0.2
716,352 - +0.5
716,352 - -0.1
716,352 - -0.2
716,957 + AZOBR_RS03380 0.53 -0.1
716,957 + AZOBR_RS03380 0.53 -0.8
716,958 - AZOBR_RS03380 0.53 -1.1
716,958 - AZOBR_RS03380 0.53 +0.1
716,958 - AZOBR_RS03380 0.53 +0.2

Or see this region's nucleotide sequence