Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS18905

Experiment: 1-octen-3-ol 0.6030326667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS18900 and AZOBR_RS18905 are separated by 286 nucleotidesAZOBR_RS18905 and AZOBR_RS18910 are separated by 977 nucleotides AZOBR_RS18900: AZOBR_RS18900 - peptidase, at 1,010,188 to 1,012,488 _RS18900 AZOBR_RS18905: AZOBR_RS18905 - hypothetical protein, at 1,012,775 to 1,013,188 _RS18905 AZOBR_RS18910: AZOBR_RS18910 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, at 1,014,166 to 1,015,302 _RS18910 Position (kb) 1012 1013 1014Strain fitness (log2 ratio) -2 -1 0 1 2at 1011.787 kb on + strand, within AZOBR_RS18900at 1011.787 kb on + strand, within AZOBR_RS18900at 1011.787 kb on + strand, within AZOBR_RS18900at 1012.135 kb on + strand, within AZOBR_RS18900at 1012.136 kb on - strand, within AZOBR_RS18900at 1012.402 kb on + strandat 1012.403 kb on - strandat 1012.403 kb on - strandat 1012.418 kb on - strandat 1012.586 kb on - strandat 1012.586 kb on - strandat 1012.587 kb on + strandat 1012.588 kb on - strandat 1012.588 kb on - strandat 1012.664 kb on + strandat 1012.664 kb on + strandat 1012.664 kb on + strandat 1012.665 kb on - strandat 1012.725 kb on - strandat 1013.013 kb on - strandat 1013.093 kb on + strand, within AZOBR_RS18905at 1013.108 kb on + strand, within AZOBR_RS18905at 1013.739 kb on + strandat 1014.106 kb on + strandat 1014.123 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.6030326667 mM
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1,011,787 + AZOBR_RS18900 0.69 -0.6
1,011,787 + AZOBR_RS18900 0.69 -2.1
1,011,787 + AZOBR_RS18900 0.69 -1.1
1,012,135 + AZOBR_RS18900 0.85 -0.8
1,012,136 - AZOBR_RS18900 0.85 -1.7
1,012,402 + -1.8
1,012,403 - -1.0
1,012,403 - +1.8
1,012,418 - -0.7
1,012,586 - +0.7
1,012,586 - +0.2
1,012,587 + +0.3
1,012,588 - -0.2
1,012,588 - -0.1
1,012,664 + +0.4
1,012,664 + +0.8
1,012,664 + +0.0
1,012,665 - +0.2
1,012,725 - +1.8
1,013,013 - -0.8
1,013,093 + AZOBR_RS18905 0.77 +0.4
1,013,108 + AZOBR_RS18905 0.80 -0.1
1,013,739 + -1.0
1,014,106 + +0.3
1,014,123 + +1.1

Or see this region's nucleotide sequence