Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03688

Experiment: TSB plate, 1:1 coculture with AMD2732

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03685 and MPMX20_03686 are separated by 12 nucleotidesMPMX20_03686 and MPMX20_03687 overlap by 16 nucleotidesMPMX20_03687 and MPMX20_03688 overlap by 4 nucleotidesMPMX20_03688 and MPMX20_03689 overlap by 10 nucleotidesMPMX20_03689 and MPMX20_03690 are separated by 184 nucleotides MPMX20_03685: MPMX20_03685 - RecBCD enzyme subunit RecC, at 3,883,401 to 3,886,775 _03685 MPMX20_03686: MPMX20_03686 - hypothetical protein, at 3,886,788 to 3,887,111 _03686 MPMX20_03687: MPMX20_03687 - hypothetical protein, at 3,887,096 to 3,887,497 _03687 MPMX20_03688: MPMX20_03688 - hypothetical protein, at 3,887,494 to 3,888,054 _03688 MPMX20_03689: MPMX20_03689 - hypothetical protein, at 3,888,045 to 3,888,509 _03689 MPMX20_03690: MPMX20_03690 - Thymidylate synthase, at 3,888,694 to 3,889,488 _03690 Position (kb) 3887 3888 3889Strain fitness (log2 ratio) -2 -1 0 1 2at 3886.547 kb on - strandat 3886.814 kb on - strandat 3886.878 kb on - strand, within MPMX20_03686at 3886.897 kb on - strand, within MPMX20_03686at 3886.897 kb on - strand, within MPMX20_03686at 3886.965 kb on - strand, within MPMX20_03686at 3887.116 kb on - strandat 3887.118 kb on + strandat 3887.299 kb on - strand, within MPMX20_03687at 3887.312 kb on + strand, within MPMX20_03687at 3887.344 kb on + strand, within MPMX20_03687at 3887.389 kb on - strand, within MPMX20_03687at 3887.553 kb on + strand, within MPMX20_03688at 3887.561 kb on - strand, within MPMX20_03688at 3887.614 kb on - strand, within MPMX20_03688at 3887.616 kb on + strand, within MPMX20_03688at 3887.641 kb on + strand, within MPMX20_03688at 3887.649 kb on - strand, within MPMX20_03688at 3887.665 kb on + strand, within MPMX20_03688at 3887.665 kb on + strand, within MPMX20_03688at 3887.666 kb on + strand, within MPMX20_03688at 3887.666 kb on + strand, within MPMX20_03688at 3887.709 kb on - strand, within MPMX20_03688at 3887.735 kb on - strand, within MPMX20_03688at 3887.766 kb on - strand, within MPMX20_03688at 3887.826 kb on + strand, within MPMX20_03688at 3887.826 kb on + strand, within MPMX20_03688at 3887.849 kb on + strand, within MPMX20_03688at 3887.874 kb on - strand, within MPMX20_03688at 3887.923 kb on - strand, within MPMX20_03688at 3887.993 kb on + strand, within MPMX20_03688at 3887.993 kb on - strand, within MPMX20_03688at 3888.003 kb on - strandat 3888.035 kb on - strandat 3888.042 kb on - strandat 3888.092 kb on - strand, within MPMX20_03689at 3888.130 kb on - strand, within MPMX20_03689at 3888.141 kb on + strand, within MPMX20_03689at 3888.246 kb on + strand, within MPMX20_03689at 3888.246 kb on + strand, within MPMX20_03689at 3888.266 kb on - strand, within MPMX20_03689at 3888.266 kb on - strand, within MPMX20_03689at 3888.285 kb on + strand, within MPMX20_03689at 3888.293 kb on - strand, within MPMX20_03689at 3888.293 kb on - strand, within MPMX20_03689at 3888.293 kb on - strand, within MPMX20_03689at 3888.320 kb on + strand, within MPMX20_03689at 3888.325 kb on + strand, within MPMX20_03689at 3888.333 kb on - strand, within MPMX20_03689at 3888.367 kb on + strand, within MPMX20_03689at 3888.385 kb on - strand, within MPMX20_03689at 3888.431 kb on + strand, within MPMX20_03689at 3888.485 kb on + strandat 3888.599 kb on - strandat 3888.691 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with AMD2732
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3,886,547 - +2.4
3,886,814 - +0.0
3,886,878 - MPMX20_03686 0.28 -0.6
3,886,897 - MPMX20_03686 0.34 -1.1
3,886,897 - MPMX20_03686 0.34 +0.8
3,886,965 - MPMX20_03686 0.55 +1.0
3,887,116 - -0.3
3,887,118 + +0.4
3,887,299 - MPMX20_03687 0.50 +0.5
3,887,312 + MPMX20_03687 0.54 +1.4
3,887,344 + MPMX20_03687 0.62 +0.2
3,887,389 - MPMX20_03687 0.73 -0.7
3,887,553 + MPMX20_03688 0.11 +0.4
3,887,561 - MPMX20_03688 0.12 +2.4
3,887,614 - MPMX20_03688 0.21 +0.2
3,887,616 + MPMX20_03688 0.22 +1.4
3,887,641 + MPMX20_03688 0.26 -0.9
3,887,649 - MPMX20_03688 0.28 +0.5
3,887,665 + MPMX20_03688 0.30 -1.2
3,887,665 + MPMX20_03688 0.30 +0.0
3,887,666 + MPMX20_03688 0.31 -1.0
3,887,666 + MPMX20_03688 0.31 -0.6
3,887,709 - MPMX20_03688 0.38 -1.5
3,887,735 - MPMX20_03688 0.43 -0.1
3,887,766 - MPMX20_03688 0.48 -0.7
3,887,826 + MPMX20_03688 0.59 -1.5
3,887,826 + MPMX20_03688 0.59 -2.3
3,887,849 + MPMX20_03688 0.63 -0.6
3,887,874 - MPMX20_03688 0.68 +0.0
3,887,923 - MPMX20_03688 0.76 -0.8
3,887,993 + MPMX20_03688 0.89 -1.3
3,887,993 - MPMX20_03688 0.89 +0.8
3,888,003 - -2.1
3,888,035 - +1.6
3,888,042 - -0.2
3,888,092 - MPMX20_03689 0.10 -0.6
3,888,130 - MPMX20_03689 0.18 -0.3
3,888,141 + MPMX20_03689 0.21 -0.2
3,888,246 + MPMX20_03689 0.43 +0.2
3,888,246 + MPMX20_03689 0.43 -0.1
3,888,266 - MPMX20_03689 0.48 -0.9
3,888,266 - MPMX20_03689 0.48 +0.3
3,888,285 + MPMX20_03689 0.52 -0.1
3,888,293 - MPMX20_03689 0.53 +0.0
3,888,293 - MPMX20_03689 0.53 +1.8
3,888,293 - MPMX20_03689 0.53 +0.7
3,888,320 + MPMX20_03689 0.59 -0.4
3,888,325 + MPMX20_03689 0.60 +0.4
3,888,333 - MPMX20_03689 0.62 -0.2
3,888,367 + MPMX20_03689 0.69 +1.2
3,888,385 - MPMX20_03689 0.73 -0.5
3,888,431 + MPMX20_03689 0.83 +0.4
3,888,485 + +1.4
3,888,599 - -0.6
3,888,691 + -0.6

Or see this region's nucleotide sequence