Experiment: TSB plate, 1:1 coculture with AMD2732
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01744 and MPMX20_01745 are separated by 9 nucleotides MPMX20_01745 and MPMX20_01746 are separated by 2 nucleotides MPMX20_01746 and MPMX20_01747 overlap by 88 nucleotides MPMX20_01747 and MPMX20_01748 are separated by 54 nucleotides
MPMX20_01744: MPMX20_01744 - [Ribosomal protein S5]-alanine N-acetyltransferase, at 1,838,798 to 1,839,382
_01744
MPMX20_01745: MPMX20_01745 - hypothetical protein, at 1,839,392 to 1,840,042
_01745
MPMX20_01746: MPMX20_01746 - Putative oxidoreductase YceM, at 1,840,045 to 1,840,968
_01746
MPMX20_01747: MPMX20_01747 - hypothetical protein, at 1,840,881 to 1,841,105
_01747
MPMX20_01748: MPMX20_01748 - putative lipid II flippase MurJ, at 1,841,160 to 1,842,695
_01748
Position (kb)
1840
1841 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1839.045 kb on - strand, within MPMX20_01744 at 1839.045 kb on - strand, within MPMX20_01744 at 1839.059 kb on + strand, within MPMX20_01744 at 1839.122 kb on - strand, within MPMX20_01744 at 1839.141 kb on + strand, within MPMX20_01744 at 1839.152 kb on + strand, within MPMX20_01744 at 1839.167 kb on + strand, within MPMX20_01744 at 1839.186 kb on + strand, within MPMX20_01744 at 1839.186 kb on + strand, within MPMX20_01744 at 1839.186 kb on + strand, within MPMX20_01744 at 1839.194 kb on - strand, within MPMX20_01744 at 1839.216 kb on + strand, within MPMX20_01744 at 1839.237 kb on - strand, within MPMX20_01744 at 1839.250 kb on - strand, within MPMX20_01744 at 1839.289 kb on + strand, within MPMX20_01744 at 1839.297 kb on - strand, within MPMX20_01744 at 1839.337 kb on + strand at 1839.347 kb on + strand at 1839.347 kb on + strand at 1839.355 kb on - strand at 1839.361 kb on + strand at 1839.361 kb on + strand at 1839.361 kb on + strand at 1839.361 kb on + strand at 1839.361 kb on + strand at 1839.361 kb on + strand at 1839.361 kb on + strand at 1839.361 kb on + strand at 1839.366 kb on + strand at 1839.369 kb on - strand at 1839.369 kb on - strand at 1839.369 kb on - strand at 1839.369 kb on - strand at 1839.369 kb on - strand at 1839.369 kb on - strand at 1839.369 kb on - strand at 1839.369 kb on - strand at 1839.374 kb on - strand at 1839.411 kb on + strand at 1839.411 kb on + strand at 1839.411 kb on + strand at 1839.419 kb on - strand at 1839.419 kb on - strand at 1839.419 kb on - strand at 1839.508 kb on + strand, within MPMX20_01745 at 1839.561 kb on - strand, within MPMX20_01745 at 1839.627 kb on - strand, within MPMX20_01745 at 1839.674 kb on - strand, within MPMX20_01745 at 1839.681 kb on + strand, within MPMX20_01745 at 1839.713 kb on - strand, within MPMX20_01745 at 1839.751 kb on + strand, within MPMX20_01745 at 1839.806 kb on - strand, within MPMX20_01745 at 1839.934 kb on - strand, within MPMX20_01745 at 1839.949 kb on - strand, within MPMX20_01745 at 1840.004 kb on - strand at 1840.037 kb on + strand at 1840.184 kb on - strand, within MPMX20_01746 at 1840.223 kb on - strand, within MPMX20_01746 at 1840.257 kb on - strand, within MPMX20_01746 at 1840.284 kb on - strand, within MPMX20_01746 at 1840.306 kb on + strand, within MPMX20_01746 at 1840.461 kb on + strand, within MPMX20_01746 at 1840.474 kb on - strand, within MPMX20_01746 at 1840.496 kb on + strand, within MPMX20_01746 at 1840.542 kb on + strand, within MPMX20_01746 at 1840.629 kb on + strand, within MPMX20_01746 at 1840.629 kb on + strand, within MPMX20_01746 at 1840.637 kb on - strand, within MPMX20_01746 at 1840.738 kb on + strand, within MPMX20_01746 at 1840.774 kb on - strand, within MPMX20_01746 at 1840.823 kb on + strand, within MPMX20_01746 at 1840.823 kb on + strand, within MPMX20_01746 at 1840.823 kb on + strand, within MPMX20_01746 at 1840.831 kb on - strand, within MPMX20_01746 at 1840.911 kb on + strand at 1840.919 kb on - strand at 1840.941 kb on + strand at 1840.941 kb on + strand at 1840.941 kb on + strand at 1840.953 kb on + strand at 1840.961 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with AMD2732 remove 1,839,045 - MPMX20_01744 0.42 -2.2 1,839,045 - MPMX20_01744 0.42 +0.7 1,839,059 + MPMX20_01744 0.45 -0.0 1,839,122 - MPMX20_01744 0.55 -1.0 1,839,141 + MPMX20_01744 0.59 -1.2 1,839,152 + MPMX20_01744 0.61 -1.4 1,839,167 + MPMX20_01744 0.63 -0.5 1,839,186 + MPMX20_01744 0.66 -0.6 1,839,186 + MPMX20_01744 0.66 -0.7 1,839,186 + MPMX20_01744 0.66 +1.7 1,839,194 - MPMX20_01744 0.68 -1.0 1,839,216 + MPMX20_01744 0.71 -0.9 1,839,237 - MPMX20_01744 0.75 -2.2 1,839,250 - MPMX20_01744 0.77 +1.7 1,839,289 + MPMX20_01744 0.84 +0.7 1,839,297 - MPMX20_01744 0.85 +0.3 1,839,337 + -0.9 1,839,347 + +0.5 1,839,347 + +1.3 1,839,355 - -0.2 1,839,361 + -0.1 1,839,361 + -2.2 1,839,361 + +1.0 1,839,361 + -0.3 1,839,361 + +0.2 1,839,361 + -0.4 1,839,361 + +0.8 1,839,361 + +1.1 1,839,366 + -0.6 1,839,369 - -1.8 1,839,369 - -0.3 1,839,369 - +0.6 1,839,369 - +0.1 1,839,369 - +0.7 1,839,369 - -0.1 1,839,369 - -1.9 1,839,369 - -0.4 1,839,374 - -0.8 1,839,411 + +0.2 1,839,411 + -1.3 1,839,411 + -0.3 1,839,419 - +2.0 1,839,419 - +0.7 1,839,419 - -0.7 1,839,508 + MPMX20_01745 0.18 +1.2 1,839,561 - MPMX20_01745 0.26 +0.2 1,839,627 - MPMX20_01745 0.36 -0.0 1,839,674 - MPMX20_01745 0.43 -0.9 1,839,681 + MPMX20_01745 0.44 +1.2 1,839,713 - MPMX20_01745 0.49 -0.4 1,839,751 + MPMX20_01745 0.55 -0.9 1,839,806 - MPMX20_01745 0.64 +1.8 1,839,934 - MPMX20_01745 0.83 -0.3 1,839,949 - MPMX20_01745 0.86 +3.3 1,840,004 - +1.0 1,840,037 + +1.7 1,840,184 - MPMX20_01746 0.15 -0.6 1,840,223 - MPMX20_01746 0.19 -2.7 1,840,257 - MPMX20_01746 0.23 +1.0 1,840,284 - MPMX20_01746 0.26 -0.3 1,840,306 + MPMX20_01746 0.28 +0.3 1,840,461 + MPMX20_01746 0.45 +1.3 1,840,474 - MPMX20_01746 0.46 -0.3 1,840,496 + MPMX20_01746 0.49 +0.9 1,840,542 + MPMX20_01746 0.54 -1.0 1,840,629 + MPMX20_01746 0.63 +1.1 1,840,629 + MPMX20_01746 0.63 -0.5 1,840,637 - MPMX20_01746 0.64 -0.8 1,840,738 + MPMX20_01746 0.75 -0.1 1,840,774 - MPMX20_01746 0.79 -2.2 1,840,823 + MPMX20_01746 0.84 -1.0 1,840,823 + MPMX20_01746 0.84 -1.6 1,840,823 + MPMX20_01746 0.84 -0.8 1,840,831 - MPMX20_01746 0.85 -3.2 1,840,911 + -0.1 1,840,919 - -0.4 1,840,941 + -1.3 1,840,941 + -0.0 1,840,941 + -0.8 1,840,953 + -0.0 1,840,961 - -0.3
Or see this region's nucleotide sequence