Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01746

Experiment: TSB plate, 1:1 coculture with AMD2732

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01744 and MPMX20_01745 are separated by 9 nucleotidesMPMX20_01745 and MPMX20_01746 are separated by 2 nucleotidesMPMX20_01746 and MPMX20_01747 overlap by 88 nucleotidesMPMX20_01747 and MPMX20_01748 are separated by 54 nucleotides MPMX20_01744: MPMX20_01744 - [Ribosomal protein S5]-alanine N-acetyltransferase, at 1,838,798 to 1,839,382 _01744 MPMX20_01745: MPMX20_01745 - hypothetical protein, at 1,839,392 to 1,840,042 _01745 MPMX20_01746: MPMX20_01746 - Putative oxidoreductase YceM, at 1,840,045 to 1,840,968 _01746 MPMX20_01747: MPMX20_01747 - hypothetical protein, at 1,840,881 to 1,841,105 _01747 MPMX20_01748: MPMX20_01748 - putative lipid II flippase MurJ, at 1,841,160 to 1,842,695 _01748 Position (kb) 1840 1841Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1839.045 kb on - strand, within MPMX20_01744at 1839.045 kb on - strand, within MPMX20_01744at 1839.059 kb on + strand, within MPMX20_01744at 1839.122 kb on - strand, within MPMX20_01744at 1839.141 kb on + strand, within MPMX20_01744at 1839.152 kb on + strand, within MPMX20_01744at 1839.167 kb on + strand, within MPMX20_01744at 1839.186 kb on + strand, within MPMX20_01744at 1839.186 kb on + strand, within MPMX20_01744at 1839.186 kb on + strand, within MPMX20_01744at 1839.194 kb on - strand, within MPMX20_01744at 1839.216 kb on + strand, within MPMX20_01744at 1839.237 kb on - strand, within MPMX20_01744at 1839.250 kb on - strand, within MPMX20_01744at 1839.289 kb on + strand, within MPMX20_01744at 1839.297 kb on - strand, within MPMX20_01744at 1839.337 kb on + strandat 1839.347 kb on + strandat 1839.347 kb on + strandat 1839.355 kb on - strandat 1839.361 kb on + strandat 1839.361 kb on + strandat 1839.361 kb on + strandat 1839.361 kb on + strandat 1839.361 kb on + strandat 1839.361 kb on + strandat 1839.361 kb on + strandat 1839.361 kb on + strandat 1839.366 kb on + strandat 1839.369 kb on - strandat 1839.369 kb on - strandat 1839.369 kb on - strandat 1839.369 kb on - strandat 1839.369 kb on - strandat 1839.369 kb on - strandat 1839.369 kb on - strandat 1839.369 kb on - strandat 1839.374 kb on - strandat 1839.411 kb on + strandat 1839.411 kb on + strandat 1839.411 kb on + strandat 1839.419 kb on - strandat 1839.419 kb on - strandat 1839.419 kb on - strandat 1839.508 kb on + strand, within MPMX20_01745at 1839.561 kb on - strand, within MPMX20_01745at 1839.627 kb on - strand, within MPMX20_01745at 1839.674 kb on - strand, within MPMX20_01745at 1839.681 kb on + strand, within MPMX20_01745at 1839.713 kb on - strand, within MPMX20_01745at 1839.751 kb on + strand, within MPMX20_01745at 1839.806 kb on - strand, within MPMX20_01745at 1839.934 kb on - strand, within MPMX20_01745at 1839.949 kb on - strand, within MPMX20_01745at 1840.004 kb on - strandat 1840.037 kb on + strandat 1840.184 kb on - strand, within MPMX20_01746at 1840.223 kb on - strand, within MPMX20_01746at 1840.257 kb on - strand, within MPMX20_01746at 1840.284 kb on - strand, within MPMX20_01746at 1840.306 kb on + strand, within MPMX20_01746at 1840.461 kb on + strand, within MPMX20_01746at 1840.474 kb on - strand, within MPMX20_01746at 1840.496 kb on + strand, within MPMX20_01746at 1840.542 kb on + strand, within MPMX20_01746at 1840.629 kb on + strand, within MPMX20_01746at 1840.629 kb on + strand, within MPMX20_01746at 1840.637 kb on - strand, within MPMX20_01746at 1840.738 kb on + strand, within MPMX20_01746at 1840.774 kb on - strand, within MPMX20_01746at 1840.823 kb on + strand, within MPMX20_01746at 1840.823 kb on + strand, within MPMX20_01746at 1840.823 kb on + strand, within MPMX20_01746at 1840.831 kb on - strand, within MPMX20_01746at 1840.911 kb on + strandat 1840.919 kb on - strandat 1840.941 kb on + strandat 1840.941 kb on + strandat 1840.941 kb on + strandat 1840.953 kb on + strandat 1840.961 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with AMD2732
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1,839,045 - MPMX20_01744 0.42 -2.2
1,839,045 - MPMX20_01744 0.42 +0.7
1,839,059 + MPMX20_01744 0.45 -0.0
1,839,122 - MPMX20_01744 0.55 -1.0
1,839,141 + MPMX20_01744 0.59 -1.2
1,839,152 + MPMX20_01744 0.61 -1.4
1,839,167 + MPMX20_01744 0.63 -0.5
1,839,186 + MPMX20_01744 0.66 -0.6
1,839,186 + MPMX20_01744 0.66 -0.7
1,839,186 + MPMX20_01744 0.66 +1.7
1,839,194 - MPMX20_01744 0.68 -1.0
1,839,216 + MPMX20_01744 0.71 -0.9
1,839,237 - MPMX20_01744 0.75 -2.2
1,839,250 - MPMX20_01744 0.77 +1.7
1,839,289 + MPMX20_01744 0.84 +0.7
1,839,297 - MPMX20_01744 0.85 +0.3
1,839,337 + -0.9
1,839,347 + +0.5
1,839,347 + +1.3
1,839,355 - -0.2
1,839,361 + -0.1
1,839,361 + -2.2
1,839,361 + +1.0
1,839,361 + -0.3
1,839,361 + +0.2
1,839,361 + -0.4
1,839,361 + +0.8
1,839,361 + +1.1
1,839,366 + -0.6
1,839,369 - -1.8
1,839,369 - -0.3
1,839,369 - +0.6
1,839,369 - +0.1
1,839,369 - +0.7
1,839,369 - -0.1
1,839,369 - -1.9
1,839,369 - -0.4
1,839,374 - -0.8
1,839,411 + +0.2
1,839,411 + -1.3
1,839,411 + -0.3
1,839,419 - +2.0
1,839,419 - +0.7
1,839,419 - -0.7
1,839,508 + MPMX20_01745 0.18 +1.2
1,839,561 - MPMX20_01745 0.26 +0.2
1,839,627 - MPMX20_01745 0.36 -0.0
1,839,674 - MPMX20_01745 0.43 -0.9
1,839,681 + MPMX20_01745 0.44 +1.2
1,839,713 - MPMX20_01745 0.49 -0.4
1,839,751 + MPMX20_01745 0.55 -0.9
1,839,806 - MPMX20_01745 0.64 +1.8
1,839,934 - MPMX20_01745 0.83 -0.3
1,839,949 - MPMX20_01745 0.86 +3.3
1,840,004 - +1.0
1,840,037 + +1.7
1,840,184 - MPMX20_01746 0.15 -0.6
1,840,223 - MPMX20_01746 0.19 -2.7
1,840,257 - MPMX20_01746 0.23 +1.0
1,840,284 - MPMX20_01746 0.26 -0.3
1,840,306 + MPMX20_01746 0.28 +0.3
1,840,461 + MPMX20_01746 0.45 +1.3
1,840,474 - MPMX20_01746 0.46 -0.3
1,840,496 + MPMX20_01746 0.49 +0.9
1,840,542 + MPMX20_01746 0.54 -1.0
1,840,629 + MPMX20_01746 0.63 +1.1
1,840,629 + MPMX20_01746 0.63 -0.5
1,840,637 - MPMX20_01746 0.64 -0.8
1,840,738 + MPMX20_01746 0.75 -0.1
1,840,774 - MPMX20_01746 0.79 -2.2
1,840,823 + MPMX20_01746 0.84 -1.0
1,840,823 + MPMX20_01746 0.84 -1.6
1,840,823 + MPMX20_01746 0.84 -0.8
1,840,831 - MPMX20_01746 0.85 -3.2
1,840,911 + -0.1
1,840,919 - -0.4
1,840,941 + -1.3
1,840,941 + -0.0
1,840,941 + -0.8
1,840,953 + -0.0
1,840,961 - -0.3

Or see this region's nucleotide sequence