Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01217

Experiment: TSB plate, 1:1 coculture with AMD2732

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01216 and MPMX20_01217 are separated by 122 nucleotidesMPMX20_01217 and MPMX20_01218 are separated by 218 nucleotides MPMX20_01216: MPMX20_01216 - Thioredoxin reductase, at 1,274,073 to 1,274,966 _01216 MPMX20_01217: MPMX20_01217 - hypothetical protein, at 1,275,089 to 1,275,748 _01217 MPMX20_01218: MPMX20_01218 - hypothetical protein, at 1,275,967 to 1,276,536 _01218 Position (kb) 1275 1276Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1274.163 kb on + strand, within MPMX20_01216at 1274.171 kb on - strand, within MPMX20_01216at 1274.255 kb on - strand, within MPMX20_01216at 1274.256 kb on - strand, within MPMX20_01216at 1274.281 kb on + strand, within MPMX20_01216at 1274.286 kb on + strand, within MPMX20_01216at 1274.297 kb on - strand, within MPMX20_01216at 1274.446 kb on - strand, within MPMX20_01216at 1274.448 kb on - strand, within MPMX20_01216at 1274.473 kb on - strand, within MPMX20_01216at 1274.494 kb on + strand, within MPMX20_01216at 1274.494 kb on + strand, within MPMX20_01216at 1274.502 kb on - strand, within MPMX20_01216at 1274.502 kb on - strand, within MPMX20_01216at 1274.502 kb on - strand, within MPMX20_01216at 1274.532 kb on - strand, within MPMX20_01216at 1274.544 kb on - strand, within MPMX20_01216at 1274.549 kb on - strand, within MPMX20_01216at 1274.549 kb on - strand, within MPMX20_01216at 1274.609 kb on - strand, within MPMX20_01216at 1274.652 kb on - strand, within MPMX20_01216at 1274.654 kb on + strand, within MPMX20_01216at 1274.657 kb on - strand, within MPMX20_01216at 1274.662 kb on - strand, within MPMX20_01216at 1274.882 kb on - strandat 1274.890 kb on - strandat 1274.912 kb on + strandat 1274.978 kb on - strandat 1275.009 kb on - strandat 1275.016 kb on - strandat 1275.118 kb on + strandat 1275.137 kb on - strandat 1275.154 kb on + strandat 1275.165 kb on + strand, within MPMX20_01217at 1275.165 kb on + strand, within MPMX20_01217at 1275.165 kb on + strand, within MPMX20_01217at 1275.165 kb on + strand, within MPMX20_01217at 1275.173 kb on - strand, within MPMX20_01217at 1275.183 kb on - strand, within MPMX20_01217at 1275.208 kb on + strand, within MPMX20_01217at 1275.208 kb on + strand, within MPMX20_01217at 1275.208 kb on + strand, within MPMX20_01217at 1275.216 kb on - strand, within MPMX20_01217at 1275.234 kb on + strand, within MPMX20_01217at 1275.246 kb on + strand, within MPMX20_01217at 1275.274 kb on + strand, within MPMX20_01217at 1275.283 kb on - strand, within MPMX20_01217at 1275.331 kb on - strand, within MPMX20_01217at 1275.384 kb on + strand, within MPMX20_01217at 1275.389 kb on - strand, within MPMX20_01217at 1275.436 kb on + strand, within MPMX20_01217at 1275.463 kb on - strand, within MPMX20_01217at 1275.551 kb on + strand, within MPMX20_01217at 1275.601 kb on + strand, within MPMX20_01217at 1275.609 kb on + strand, within MPMX20_01217at 1275.617 kb on - strand, within MPMX20_01217at 1275.638 kb on + strand, within MPMX20_01217at 1275.638 kb on + strand, within MPMX20_01217at 1275.643 kb on + strand, within MPMX20_01217at 1275.643 kb on + strand, within MPMX20_01217at 1275.643 kb on + strand, within MPMX20_01217at 1275.643 kb on + strand, within MPMX20_01217at 1275.643 kb on + strand, within MPMX20_01217at 1275.643 kb on + strand, within MPMX20_01217at 1275.643 kb on + strand, within MPMX20_01217at 1275.643 kb on + strand, within MPMX20_01217at 1275.643 kb on + strand, within MPMX20_01217at 1275.643 kb on + strand, within MPMX20_01217at 1275.643 kb on + strand, within MPMX20_01217at 1275.643 kb on + strand, within MPMX20_01217at 1275.643 kb on + strand, within MPMX20_01217at 1275.643 kb on + strand, within MPMX20_01217at 1275.643 kb on + strand, within MPMX20_01217at 1275.643 kb on + strand, within MPMX20_01217at 1275.643 kb on + strand, within MPMX20_01217at 1275.643 kb on + strand, within MPMX20_01217at 1275.643 kb on + strand, within MPMX20_01217at 1275.650 kb on + strand, within MPMX20_01217at 1275.651 kb on - strand, within MPMX20_01217at 1275.651 kb on - strand, within MPMX20_01217at 1275.651 kb on - strand, within MPMX20_01217at 1275.651 kb on - strand, within MPMX20_01217at 1275.651 kb on - strand, within MPMX20_01217at 1275.651 kb on - strand, within MPMX20_01217at 1275.651 kb on - strand, within MPMX20_01217at 1275.651 kb on - strand, within MPMX20_01217at 1275.651 kb on - strand, within MPMX20_01217at 1275.651 kb on - strand, within MPMX20_01217at 1275.651 kb on - strand, within MPMX20_01217at 1275.651 kb on - strand, within MPMX20_01217at 1275.651 kb on - strand, within MPMX20_01217at 1275.673 kb on + strand, within MPMX20_01217at 1275.708 kb on - strandat 1275.715 kb on + strandat 1275.742 kb on + strandat 1275.742 kb on + strandat 1275.742 kb on + strandat 1275.750 kb on - strandat 1275.750 kb on - strandat 1275.756 kb on + strandat 1275.784 kb on + strandat 1275.790 kb on + strandat 1275.790 kb on + strandat 1275.790 kb on + strandat 1275.790 kb on + strandat 1275.790 kb on + strandat 1275.790 kb on + strandat 1275.790 kb on + strandat 1275.798 kb on - strandat 1275.798 kb on - strandat 1275.798 kb on - strandat 1275.859 kb on - strandat 1275.862 kb on + strandat 1275.870 kb on - strandat 1275.878 kb on + strandat 1275.937 kb on + strandat 1275.945 kb on - strandat 1275.945 kb on - strandat 1275.948 kb on + strandat 1275.948 kb on + strandat 1275.982 kb on - strandat 1275.998 kb on + strandat 1276.069 kb on + strand, within MPMX20_01218at 1276.082 kb on - strand, within MPMX20_01218at 1276.102 kb on + strand, within MPMX20_01218at 1276.130 kb on - strand, within MPMX20_01218at 1276.146 kb on - strand, within MPMX20_01218at 1276.261 kb on - strand, within MPMX20_01218at 1276.265 kb on + strand, within MPMX20_01218at 1276.307 kb on - strand, within MPMX20_01218at 1276.324 kb on + strand, within MPMX20_01218at 1276.353 kb on - strand, within MPMX20_01218at 1276.353 kb on - strand, within MPMX20_01218at 1276.381 kb on + strand, within MPMX20_01218at 1276.381 kb on + strand, within MPMX20_01218at 1276.381 kb on + strand, within MPMX20_01218at 1276.407 kb on + strand, within MPMX20_01218at 1276.407 kb on + strand, within MPMX20_01218at 1276.407 kb on + strand, within MPMX20_01218at 1276.407 kb on + strand, within MPMX20_01218at 1276.414 kb on + strand, within MPMX20_01218at 1276.415 kb on - strand, within MPMX20_01218at 1276.415 kb on - strand, within MPMX20_01218at 1276.466 kb on - strand, within MPMX20_01218at 1276.468 kb on + strand, within MPMX20_01218at 1276.516 kb on - strandat 1276.528 kb on - strandat 1276.528 kb on - strandat 1276.528 kb on - strandat 1276.528 kb on - strandat 1276.730 kb on + strandat 1276.731 kb on - strandat 1276.738 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with AMD2732
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1,274,163 + MPMX20_01216 0.10 -0.0
1,274,171 - MPMX20_01216 0.11 +1.8
1,274,255 - MPMX20_01216 0.20 -2.0
1,274,256 - MPMX20_01216 0.20 +0.4
1,274,281 + MPMX20_01216 0.23 +0.7
1,274,286 + MPMX20_01216 0.24 +1.3
1,274,297 - MPMX20_01216 0.25 -1.7
1,274,446 - MPMX20_01216 0.42 -0.7
1,274,448 - MPMX20_01216 0.42 -1.6
1,274,473 - MPMX20_01216 0.45 -0.0
1,274,494 + MPMX20_01216 0.47 +0.6
1,274,494 + MPMX20_01216 0.47 -0.0
1,274,502 - MPMX20_01216 0.48 +1.3
1,274,502 - MPMX20_01216 0.48 -0.2
1,274,502 - MPMX20_01216 0.48 +0.9
1,274,532 - MPMX20_01216 0.51 -0.2
1,274,544 - MPMX20_01216 0.53 -0.2
1,274,549 - MPMX20_01216 0.53 -0.9
1,274,549 - MPMX20_01216 0.53 -1.3
1,274,609 - MPMX20_01216 0.60 -1.7
1,274,652 - MPMX20_01216 0.65 -1.3
1,274,654 + MPMX20_01216 0.65 +0.6
1,274,657 - MPMX20_01216 0.65 -1.4
1,274,662 - MPMX20_01216 0.66 +0.4
1,274,882 - +0.7
1,274,890 - +0.3
1,274,912 + +0.1
1,274,978 - -0.5
1,275,009 - +1.7
1,275,016 - -3.9
1,275,118 + +0.2
1,275,137 - -0.4
1,275,154 + +0.2
1,275,165 + MPMX20_01217 0.12 -0.3
1,275,165 + MPMX20_01217 0.12 +2.4
1,275,165 + MPMX20_01217 0.12 +2.3
1,275,165 + MPMX20_01217 0.12 +1.6
1,275,173 - MPMX20_01217 0.13 -0.6
1,275,183 - MPMX20_01217 0.14 +1.4
1,275,208 + MPMX20_01217 0.18 +2.3
1,275,208 + MPMX20_01217 0.18 -0.3
1,275,208 + MPMX20_01217 0.18 +2.6
1,275,216 - MPMX20_01217 0.19 +0.3
1,275,234 + MPMX20_01217 0.22 +1.0
1,275,246 + MPMX20_01217 0.24 +0.3
1,275,274 + MPMX20_01217 0.28 +1.7
1,275,283 - MPMX20_01217 0.29 +2.3
1,275,331 - MPMX20_01217 0.37 +0.1
1,275,384 + MPMX20_01217 0.45 +1.3
1,275,389 - MPMX20_01217 0.45 +1.5
1,275,436 + MPMX20_01217 0.53 +0.7
1,275,463 - MPMX20_01217 0.57 +0.8
1,275,551 + MPMX20_01217 0.70 +1.8
1,275,601 + MPMX20_01217 0.78 +1.0
1,275,609 + MPMX20_01217 0.79 -1.0
1,275,617 - MPMX20_01217 0.80 +1.1
1,275,638 + MPMX20_01217 0.83 +0.9
1,275,638 + MPMX20_01217 0.83 -2.4
1,275,643 + MPMX20_01217 0.84 -0.3
1,275,643 + MPMX20_01217 0.84 +1.2
1,275,643 + MPMX20_01217 0.84 +0.0
1,275,643 + MPMX20_01217 0.84 +0.7
1,275,643 + MPMX20_01217 0.84 +2.1
1,275,643 + MPMX20_01217 0.84 +2.6
1,275,643 + MPMX20_01217 0.84 +1.1
1,275,643 + MPMX20_01217 0.84 -2.7
1,275,643 + MPMX20_01217 0.84 +3.0
1,275,643 + MPMX20_01217 0.84 +0.2
1,275,643 + MPMX20_01217 0.84 +2.6
1,275,643 + MPMX20_01217 0.84 +1.6
1,275,643 + MPMX20_01217 0.84 +2.3
1,275,643 + MPMX20_01217 0.84 +0.5
1,275,643 + MPMX20_01217 0.84 -1.0
1,275,643 + MPMX20_01217 0.84 +0.1
1,275,643 + MPMX20_01217 0.84 +2.0
1,275,643 + MPMX20_01217 0.84 +1.4
1,275,643 + MPMX20_01217 0.84 -0.3
1,275,650 + MPMX20_01217 0.85 +0.4
1,275,651 - MPMX20_01217 0.85 +2.1
1,275,651 - MPMX20_01217 0.85 -2.1
1,275,651 - MPMX20_01217 0.85 +1.6
1,275,651 - MPMX20_01217 0.85 +0.2
1,275,651 - MPMX20_01217 0.85 -0.2
1,275,651 - MPMX20_01217 0.85 +0.2
1,275,651 - MPMX20_01217 0.85 +0.1
1,275,651 - MPMX20_01217 0.85 +3.1
1,275,651 - MPMX20_01217 0.85 +3.6
1,275,651 - MPMX20_01217 0.85 +0.1
1,275,651 - MPMX20_01217 0.85 +1.5
1,275,651 - MPMX20_01217 0.85 +1.8
1,275,651 - MPMX20_01217 0.85 +1.6
1,275,673 + MPMX20_01217 0.88 +2.0
1,275,708 - +0.3
1,275,715 + -0.0
1,275,742 + +0.2
1,275,742 + +1.1
1,275,742 + -1.2
1,275,750 - -1.1
1,275,750 - -1.6
1,275,756 + +0.6
1,275,784 + -0.0
1,275,790 + +0.3
1,275,790 + -1.0
1,275,790 + +0.1
1,275,790 + -1.3
1,275,790 + -0.9
1,275,790 + +1.3
1,275,790 + -0.6
1,275,798 - -0.2
1,275,798 - -1.1
1,275,798 - -0.7
1,275,859 - -1.2
1,275,862 + -1.0
1,275,870 - +1.9
1,275,878 + +0.8
1,275,937 + +2.3
1,275,945 - +0.1
1,275,945 - -0.8
1,275,948 + -0.8
1,275,948 + -1.3
1,275,982 - +0.6
1,275,998 + -0.3
1,276,069 + MPMX20_01218 0.18 -0.9
1,276,082 - MPMX20_01218 0.20 -0.7
1,276,102 + MPMX20_01218 0.24 -1.1
1,276,130 - MPMX20_01218 0.29 -0.3
1,276,146 - MPMX20_01218 0.31 -1.3
1,276,261 - MPMX20_01218 0.52 -1.0
1,276,265 + MPMX20_01218 0.52 -0.0
1,276,307 - MPMX20_01218 0.60 -2.1
1,276,324 + MPMX20_01218 0.63 +0.3
1,276,353 - MPMX20_01218 0.68 -1.2
1,276,353 - MPMX20_01218 0.68 +0.4
1,276,381 + MPMX20_01218 0.73 -0.6
1,276,381 + MPMX20_01218 0.73 +1.2
1,276,381 + MPMX20_01218 0.73 +0.1
1,276,407 + MPMX20_01218 0.77 -0.6
1,276,407 + MPMX20_01218 0.77 -1.4
1,276,407 + MPMX20_01218 0.77 +0.0
1,276,407 + MPMX20_01218 0.77 +0.9
1,276,414 + MPMX20_01218 0.78 +1.7
1,276,415 - MPMX20_01218 0.79 +1.8
1,276,415 - MPMX20_01218 0.79 -0.5
1,276,466 - MPMX20_01218 0.88 -0.7
1,276,468 + MPMX20_01218 0.88 +1.3
1,276,516 - +0.8
1,276,528 - -2.2
1,276,528 - +0.3
1,276,528 - -0.4
1,276,528 - +0.2
1,276,730 + +0.3
1,276,731 - -1.3
1,276,738 - +0.2

Or see this region's nucleotide sequence