Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00486

Experiment: TSB plate, 1:1 coculture with AMD2732

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_00484 and MPMX20_00485 are separated by 65 nucleotidesMPMX20_00485 and MPMX20_00486 are separated by 246 nucleotidesMPMX20_00486 and MPMX20_00487 overlap by 4 nucleotides MPMX20_00484: MPMX20_00484 - D-serine/D-alanine/glycine transporter, at 496,400 to 497,809 _00484 MPMX20_00485: MPMX20_00485 - Iron-sulfur cluster repair protein YtfE, at 497,875 to 498,537 _00485 MPMX20_00486: MPMX20_00486 - Methyl-accepting chemotaxis protein I, at 498,784 to 500,433 _00486 MPMX20_00487: MPMX20_00487 - Inner membrane protein YtfF, at 500,430 to 501,395 _00487 Position (kb) 498 499 500 501Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8at 497.845 kb on + strandat 497.853 kb on - strandat 497.853 kb on - strandat 497.894 kb on + strandat 497.902 kb on - strandat 497.902 kb on - strandat 497.902 kb on - strandat 497.918 kb on + strandat 497.921 kb on - strandat 497.923 kb on + strandat 497.926 kb on - strandat 497.965 kb on + strand, within MPMX20_00485at 497.973 kb on - strand, within MPMX20_00485at 497.984 kb on + strand, within MPMX20_00485at 497.984 kb on + strand, within MPMX20_00485at 497.992 kb on - strand, within MPMX20_00485at 498.003 kb on + strand, within MPMX20_00485at 498.003 kb on + strand, within MPMX20_00485at 498.101 kb on + strand, within MPMX20_00485at 498.101 kb on + strand, within MPMX20_00485at 498.101 kb on + strand, within MPMX20_00485at 498.109 kb on - strand, within MPMX20_00485at 498.109 kb on - strand, within MPMX20_00485at 498.109 kb on - strand, within MPMX20_00485at 498.109 kb on - strand, within MPMX20_00485at 498.109 kb on - strand, within MPMX20_00485at 498.109 kb on - strand, within MPMX20_00485at 498.130 kb on + strand, within MPMX20_00485at 498.162 kb on + strand, within MPMX20_00485at 498.257 kb on + strand, within MPMX20_00485at 498.321 kb on - strand, within MPMX20_00485at 498.332 kb on - strand, within MPMX20_00485at 498.332 kb on - strand, within MPMX20_00485at 498.365 kb on - strand, within MPMX20_00485at 498.380 kb on + strand, within MPMX20_00485at 498.410 kb on - strand, within MPMX20_00485at 498.423 kb on - strand, within MPMX20_00485at 498.431 kb on - strand, within MPMX20_00485at 498.431 kb on - strand, within MPMX20_00485at 498.451 kb on - strand, within MPMX20_00485at 498.456 kb on - strand, within MPMX20_00485at 498.456 kb on - strand, within MPMX20_00485at 498.532 kb on + strandat 498.532 kb on + strandat 498.532 kb on + strandat 498.540 kb on - strandat 498.547 kb on - strandat 498.596 kb on + strandat 498.597 kb on + strandat 498.604 kb on - strandat 498.605 kb on - strandat 498.605 kb on - strandat 498.714 kb on + strandat 498.717 kb on - strandat 498.751 kb on - strandat 498.754 kb on + strandat 498.762 kb on - strandat 498.786 kb on + strandat 498.801 kb on + strandat 498.802 kb on + strandat 498.802 kb on - strandat 498.811 kb on - strandat 498.813 kb on + strandat 498.915 kb on + strandat 498.915 kb on + strandat 498.930 kb on - strandat 498.940 kb on - strandat 498.959 kb on + strand, within MPMX20_00486at 498.959 kb on + strand, within MPMX20_00486at 498.959 kb on + strand, within MPMX20_00486at 498.959 kb on + strand, within MPMX20_00486at 498.959 kb on + strand, within MPMX20_00486at 498.959 kb on + strand, within MPMX20_00486at 498.959 kb on + strand, within MPMX20_00486at 498.962 kb on - strand, within MPMX20_00486at 498.967 kb on - strand, within MPMX20_00486at 498.967 kb on - strand, within MPMX20_00486at 498.967 kb on - strand, within MPMX20_00486at 498.967 kb on - strand, within MPMX20_00486at 498.967 kb on - strand, within MPMX20_00486at 498.972 kb on - strand, within MPMX20_00486at 498.974 kb on + strand, within MPMX20_00486at 498.979 kb on + strand, within MPMX20_00486at 498.979 kb on + strand, within MPMX20_00486at 498.979 kb on + strand, within MPMX20_00486at 498.979 kb on + strand, within MPMX20_00486at 498.979 kb on + strand, within MPMX20_00486at 498.979 kb on + strand, within MPMX20_00486at 498.982 kb on - strand, within MPMX20_00486at 498.982 kb on - strand, within MPMX20_00486at 498.982 kb on - strand, within MPMX20_00486at 498.987 kb on - strand, within MPMX20_00486at 498.987 kb on - strand, within MPMX20_00486at 498.987 kb on - strand, within MPMX20_00486at 498.987 kb on - strand, within MPMX20_00486at 498.987 kb on - strand, within MPMX20_00486at 498.987 kb on - strand, within MPMX20_00486at 498.987 kb on - strand, within MPMX20_00486at 499.026 kb on + strand, within MPMX20_00486at 499.034 kb on - strand, within MPMX20_00486at 499.061 kb on - strand, within MPMX20_00486at 499.063 kb on + strand, within MPMX20_00486at 499.104 kb on + strand, within MPMX20_00486at 499.116 kb on + strand, within MPMX20_00486at 499.116 kb on + strand, within MPMX20_00486at 499.124 kb on + strand, within MPMX20_00486at 499.124 kb on - strand, within MPMX20_00486at 499.124 kb on - strand, within MPMX20_00486at 499.124 kb on - strand, within MPMX20_00486at 499.140 kb on + strand, within MPMX20_00486at 499.170 kb on - strand, within MPMX20_00486at 499.213 kb on + strand, within MPMX20_00486at 499.223 kb on + strand, within MPMX20_00486at 499.286 kb on - strand, within MPMX20_00486at 499.286 kb on - strand, within MPMX20_00486at 499.335 kb on - strand, within MPMX20_00486at 499.368 kb on - strand, within MPMX20_00486at 499.415 kb on + strand, within MPMX20_00486at 499.430 kb on + strand, within MPMX20_00486at 499.497 kb on - strand, within MPMX20_00486at 499.547 kb on + strand, within MPMX20_00486at 499.565 kb on - strand, within MPMX20_00486at 499.580 kb on - strand, within MPMX20_00486at 499.630 kb on - strand, within MPMX20_00486at 499.654 kb on - strand, within MPMX20_00486at 499.658 kb on - strand, within MPMX20_00486at 499.790 kb on - strand, within MPMX20_00486at 499.810 kb on + strand, within MPMX20_00486at 499.827 kb on - strand, within MPMX20_00486at 499.830 kb on + strand, within MPMX20_00486at 499.951 kb on + strand, within MPMX20_00486at 499.954 kb on + strand, within MPMX20_00486at 499.984 kb on + strand, within MPMX20_00486at 499.985 kb on - strand, within MPMX20_00486at 499.992 kb on - strand, within MPMX20_00486at 499.992 kb on - strand, within MPMX20_00486at 499.997 kb on + strand, within MPMX20_00486at 499.997 kb on + strand, within MPMX20_00486at 499.997 kb on + strand, within MPMX20_00486at 499.997 kb on + strand, within MPMX20_00486at 500.015 kb on - strand, within MPMX20_00486at 500.189 kb on + strand, within MPMX20_00486at 500.203 kb on + strand, within MPMX20_00486at 500.357 kb on - strandat 500.357 kb on - strandat 500.385 kb on + strandat 500.393 kb on - strandat 500.492 kb on + strandat 500.560 kb on + strand, within MPMX20_00487at 500.560 kb on + strand, within MPMX20_00487at 500.560 kb on + strand, within MPMX20_00487at 500.568 kb on - strand, within MPMX20_00487at 500.568 kb on - strand, within MPMX20_00487at 500.568 kb on - strand, within MPMX20_00487at 500.568 kb on - strand, within MPMX20_00487at 500.568 kb on - strand, within MPMX20_00487at 500.568 kb on - strand, within MPMX20_00487at 500.568 kb on - strand, within MPMX20_00487at 500.638 kb on + strand, within MPMX20_00487at 500.638 kb on + strand, within MPMX20_00487at 500.646 kb on - strand, within MPMX20_00487at 500.657 kb on + strand, within MPMX20_00487at 500.657 kb on + strand, within MPMX20_00487at 500.657 kb on + strand, within MPMX20_00487at 500.665 kb on - strand, within MPMX20_00487at 500.708 kb on + strand, within MPMX20_00487at 500.716 kb on - strand, within MPMX20_00487at 500.750 kb on - strand, within MPMX20_00487at 500.753 kb on + strand, within MPMX20_00487at 500.773 kb on - strand, within MPMX20_00487at 500.775 kb on + strand, within MPMX20_00487at 500.873 kb on + strand, within MPMX20_00487at 500.873 kb on + strand, within MPMX20_00487at 500.873 kb on + strand, within MPMX20_00487at 500.876 kb on - strand, within MPMX20_00487at 500.876 kb on - strand, within MPMX20_00487at 500.948 kb on + strand, within MPMX20_00487at 500.962 kb on - strand, within MPMX20_00487at 500.993 kb on - strand, within MPMX20_00487at 500.998 kb on + strand, within MPMX20_00487at 500.998 kb on - strand, within MPMX20_00487at 501.001 kb on + strand, within MPMX20_00487at 501.001 kb on + strand, within MPMX20_00487at 501.006 kb on + strand, within MPMX20_00487at 501.006 kb on - strand, within MPMX20_00487at 501.055 kb on + strand, within MPMX20_00487at 501.065 kb on + strand, within MPMX20_00487at 501.079 kb on + strand, within MPMX20_00487at 501.122 kb on + strand, within MPMX20_00487at 501.142 kb on + strand, within MPMX20_00487at 501.252 kb on - strand, within MPMX20_00487at 501.286 kb on + strand, within MPMX20_00487at 501.354 kb on + strandat 501.357 kb on - strandat 501.372 kb on + strandat 501.388 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with AMD2732
remove
497,845 + +0.7
497,853 - +0.7
497,853 - -0.5
497,894 + +1.7
497,902 - +0.3
497,902 - -1.4
497,902 - +1.0
497,918 + +0.6
497,921 - -0.9
497,923 + -0.0
497,926 - +0.7
497,965 + MPMX20_00485 0.14 -1.2
497,973 - MPMX20_00485 0.15 -1.1
497,984 + MPMX20_00485 0.16 +1.9
497,984 + MPMX20_00485 0.16 +0.3
497,992 - MPMX20_00485 0.18 +0.3
498,003 + MPMX20_00485 0.19 +0.6
498,003 + MPMX20_00485 0.19 +0.3
498,101 + MPMX20_00485 0.34 +1.0
498,101 + MPMX20_00485 0.34 -0.7
498,101 + MPMX20_00485 0.34 -0.4
498,109 - MPMX20_00485 0.35 +0.1
498,109 - MPMX20_00485 0.35 -1.2
498,109 - MPMX20_00485 0.35 -1.4
498,109 - MPMX20_00485 0.35 -0.5
498,109 - MPMX20_00485 0.35 -0.1
498,109 - MPMX20_00485 0.35 -0.4
498,130 + MPMX20_00485 0.38 +0.5
498,162 + MPMX20_00485 0.43 -1.0
498,257 + MPMX20_00485 0.58 +0.3
498,321 - MPMX20_00485 0.67 -0.9
498,332 - MPMX20_00485 0.69 +1.0
498,332 - MPMX20_00485 0.69 +0.3
498,365 - MPMX20_00485 0.74 -0.8
498,380 + MPMX20_00485 0.76 -1.2
498,410 - MPMX20_00485 0.81 -0.5
498,423 - MPMX20_00485 0.83 -0.2
498,431 - MPMX20_00485 0.84 +0.3
498,431 - MPMX20_00485 0.84 -1.3
498,451 - MPMX20_00485 0.87 +0.1
498,456 - MPMX20_00485 0.88 +0.1
498,456 - MPMX20_00485 0.88 -0.3
498,532 + +0.7
498,532 + +0.1
498,532 + +0.7
498,540 - -1.0
498,547 - +0.7
498,596 + -0.7
498,597 + +1.3
498,604 - +0.0
498,605 - +0.9
498,605 - +1.0
498,714 + +0.2
498,717 - +1.7
498,751 - +1.7
498,754 + +2.3
498,762 - -0.7
498,786 + -0.1
498,801 + +0.6
498,802 + -0.0
498,802 - +2.0
498,811 - +1.6
498,813 + -1.7
498,915 + -0.7
498,915 + +1.1
498,930 - +0.5
498,940 - -0.3
498,959 + MPMX20_00486 0.11 +1.2
498,959 + MPMX20_00486 0.11 -0.2
498,959 + MPMX20_00486 0.11 -2.3
498,959 + MPMX20_00486 0.11 +8.5
498,959 + MPMX20_00486 0.11 +0.2
498,959 + MPMX20_00486 0.11 -0.9
498,959 + MPMX20_00486 0.11 +1.3
498,962 - MPMX20_00486 0.11 -0.5
498,967 - MPMX20_00486 0.11 +0.8
498,967 - MPMX20_00486 0.11 +0.5
498,967 - MPMX20_00486 0.11 +1.9
498,967 - MPMX20_00486 0.11 -1.0
498,967 - MPMX20_00486 0.11 -0.4
498,972 - MPMX20_00486 0.11 +0.5
498,974 + MPMX20_00486 0.12 -2.2
498,979 + MPMX20_00486 0.12 +4.3
498,979 + MPMX20_00486 0.12 +2.3
498,979 + MPMX20_00486 0.12 +0.4
498,979 + MPMX20_00486 0.12 -0.6
498,979 + MPMX20_00486 0.12 +0.3
498,979 + MPMX20_00486 0.12 -0.3
498,982 - MPMX20_00486 0.12 +1.9
498,982 - MPMX20_00486 0.12 +0.2
498,982 - MPMX20_00486 0.12 -1.6
498,987 - MPMX20_00486 0.12 +0.0
498,987 - MPMX20_00486 0.12 +0.7
498,987 - MPMX20_00486 0.12 +0.7
498,987 - MPMX20_00486 0.12 -0.9
498,987 - MPMX20_00486 0.12 -1.1
498,987 - MPMX20_00486 0.12 +0.3
498,987 - MPMX20_00486 0.12 -1.8
499,026 + MPMX20_00486 0.15 +0.1
499,034 - MPMX20_00486 0.15 -0.7
499,061 - MPMX20_00486 0.17 -1.2
499,063 + MPMX20_00486 0.17 -0.9
499,104 + MPMX20_00486 0.19 -1.2
499,116 + MPMX20_00486 0.20 -1.5
499,116 + MPMX20_00486 0.20 -0.3
499,124 + MPMX20_00486 0.21 +0.5
499,124 - MPMX20_00486 0.21 -2.1
499,124 - MPMX20_00486 0.21 -2.3
499,124 - MPMX20_00486 0.21 -0.6
499,140 + MPMX20_00486 0.22 -0.7
499,170 - MPMX20_00486 0.23 -0.5
499,213 + MPMX20_00486 0.26 -0.4
499,223 + MPMX20_00486 0.27 -0.8
499,286 - MPMX20_00486 0.30 -0.4
499,286 - MPMX20_00486 0.30 +2.6
499,335 - MPMX20_00486 0.33 +1.5
499,368 - MPMX20_00486 0.35 -0.2
499,415 + MPMX20_00486 0.38 +1.2
499,430 + MPMX20_00486 0.39 -1.2
499,497 - MPMX20_00486 0.43 -0.7
499,547 + MPMX20_00486 0.46 -0.5
499,565 - MPMX20_00486 0.47 +1.7
499,580 - MPMX20_00486 0.48 +0.0
499,630 - MPMX20_00486 0.51 -0.2
499,654 - MPMX20_00486 0.53 -0.9
499,658 - MPMX20_00486 0.53 -0.2
499,790 - MPMX20_00486 0.61 -0.0
499,810 + MPMX20_00486 0.62 +0.2
499,827 - MPMX20_00486 0.63 +2.3
499,830 + MPMX20_00486 0.63 +0.1
499,951 + MPMX20_00486 0.71 +0.3
499,954 + MPMX20_00486 0.71 -1.4
499,984 + MPMX20_00486 0.73 -0.3
499,985 - MPMX20_00486 0.73 +0.1
499,992 - MPMX20_00486 0.73 +1.3
499,992 - MPMX20_00486 0.73 +0.5
499,997 + MPMX20_00486 0.74 +1.2
499,997 + MPMX20_00486 0.74 +2.9
499,997 + MPMX20_00486 0.74 -0.8
499,997 + MPMX20_00486 0.74 -0.0
500,015 - MPMX20_00486 0.75 +0.3
500,189 + MPMX20_00486 0.85 +1.0
500,203 + MPMX20_00486 0.86 +0.3
500,357 - -2.1
500,357 - -0.2
500,385 + +0.4
500,393 - -0.7
500,492 + -0.6
500,560 + MPMX20_00487 0.13 -0.9
500,560 + MPMX20_00487 0.13 +0.1
500,560 + MPMX20_00487 0.13 +0.2
500,568 - MPMX20_00487 0.14 -1.9
500,568 - MPMX20_00487 0.14 -0.0
500,568 - MPMX20_00487 0.14 -2.5
500,568 - MPMX20_00487 0.14 -0.1
500,568 - MPMX20_00487 0.14 -1.2
500,568 - MPMX20_00487 0.14 +0.7
500,568 - MPMX20_00487 0.14 -1.8
500,638 + MPMX20_00487 0.22 -0.5
500,638 + MPMX20_00487 0.22 -2.3
500,646 - MPMX20_00487 0.22 +0.0
500,657 + MPMX20_00487 0.23 -1.0
500,657 + MPMX20_00487 0.23 -1.2
500,657 + MPMX20_00487 0.23 -1.3
500,665 - MPMX20_00487 0.24 -1.0
500,708 + MPMX20_00487 0.29 +0.6
500,716 - MPMX20_00487 0.30 -0.7
500,750 - MPMX20_00487 0.33 -2.6
500,753 + MPMX20_00487 0.33 +0.6
500,773 - MPMX20_00487 0.36 -0.3
500,775 + MPMX20_00487 0.36 +0.6
500,873 + MPMX20_00487 0.46 -0.3
500,873 + MPMX20_00487 0.46 -0.5
500,873 + MPMX20_00487 0.46 -0.3
500,876 - MPMX20_00487 0.46 +0.7
500,876 - MPMX20_00487 0.46 +1.0
500,948 + MPMX20_00487 0.54 -0.2
500,962 - MPMX20_00487 0.55 -2.2
500,993 - MPMX20_00487 0.58 -0.5
500,998 + MPMX20_00487 0.59 -1.2
500,998 - MPMX20_00487 0.59 -2.0
501,001 + MPMX20_00487 0.59 +0.8
501,001 + MPMX20_00487 0.59 -0.4
501,006 + MPMX20_00487 0.60 -0.5
501,006 - MPMX20_00487 0.60 -0.3
501,055 + MPMX20_00487 0.65 -0.6
501,065 + MPMX20_00487 0.66 -0.0
501,079 + MPMX20_00487 0.67 +2.2
501,122 + MPMX20_00487 0.72 -2.1
501,142 + MPMX20_00487 0.74 -0.9
501,252 - MPMX20_00487 0.85 -0.1
501,286 + MPMX20_00487 0.89 +0.8
501,354 + +1.3
501,357 - +1.7
501,372 + -0.1
501,388 - -2.1

Or see this region's nucleotide sequence