Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00286

Experiment: TSB plate, 1:1 coculture with AMD2732

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_00285 and MPMX20_00286 are separated by 48 nucleotidesMPMX20_00286 and MPMX20_00287 are separated by 102 nucleotidesMPMX20_00287 and MPMX20_00288 overlap by 8 nucleotides MPMX20_00285: MPMX20_00285 - Sodium, potassium, lithium and rubidium/H(+) antiporter, at 303,943 to 305,589 _00285 MPMX20_00286: MPMX20_00286 - Hydrogen peroxide-inducible genes activator, at 305,638 to 306,519 _00286 MPMX20_00287: MPMX20_00287 - Holin-like protein CidA, at 306,622 to 307,032 _00287 MPMX20_00288: MPMX20_00288 - Inner membrane protein YohK, at 307,025 to 307,714 _00288 Position (kb) 305 306 307Strain fitness (log2 ratio) -2 -1 0 1 2 3at 304.760 kb on + strand, within MPMX20_00285at 304.908 kb on + strand, within MPMX20_00285at 304.908 kb on + strand, within MPMX20_00285at 304.916 kb on - strand, within MPMX20_00285at 304.916 kb on - strand, within MPMX20_00285at 304.916 kb on - strand, within MPMX20_00285at 304.921 kb on - strand, within MPMX20_00285at 305.015 kb on + strand, within MPMX20_00285at 305.015 kb on + strand, within MPMX20_00285at 305.082 kb on - strand, within MPMX20_00285at 305.243 kb on - strand, within MPMX20_00285at 305.243 kb on - strand, within MPMX20_00285at 305.250 kb on - strand, within MPMX20_00285at 305.298 kb on - strand, within MPMX20_00285at 305.324 kb on + strand, within MPMX20_00285at 305.361 kb on - strand, within MPMX20_00285at 305.485 kb on + strandat 305.487 kb on + strandat 305.495 kb on - strandat 305.548 kb on + strandat 305.618 kb on - strandat 305.620 kb on - strandat 305.635 kb on + strandat 305.643 kb on - strandat 305.643 kb on - strandat 305.644 kb on - strandat 305.663 kb on - strandat 305.669 kb on + strandat 305.681 kb on + strandat 305.682 kb on - strandat 305.761 kb on - strand, within MPMX20_00286at 305.822 kb on + strand, within MPMX20_00286at 305.877 kb on + strand, within MPMX20_00286at 305.975 kb on - strand, within MPMX20_00286at 305.990 kb on - strand, within MPMX20_00286at 306.002 kb on + strand, within MPMX20_00286at 306.129 kb on - strand, within MPMX20_00286at 306.322 kb on + strand, within MPMX20_00286at 306.359 kb on - strand, within MPMX20_00286at 306.391 kb on - strand, within MPMX20_00286at 306.432 kb on - strandat 306.456 kb on - strandat 306.463 kb on + strandat 306.471 kb on - strandat 306.506 kb on + strandat 306.514 kb on - strandat 306.514 kb on - strandat 306.540 kb on - strandat 306.540 kb on - strandat 306.540 kb on - strandat 306.583 kb on + strandat 306.591 kb on - strandat 306.626 kb on - strandat 306.631 kb on + strandat 306.631 kb on + strandat 306.631 kb on + strandat 306.639 kb on - strandat 306.639 kb on - strandat 306.666 kb on + strand, within MPMX20_00287at 306.785 kb on + strand, within MPMX20_00287at 306.785 kb on + strand, within MPMX20_00287at 306.793 kb on - strand, within MPMX20_00287at 306.809 kb on + strand, within MPMX20_00287at 306.816 kb on - strand, within MPMX20_00287at 306.864 kb on - strand, within MPMX20_00287at 306.886 kb on + strand, within MPMX20_00287at 306.893 kb on + strand, within MPMX20_00287at 306.911 kb on + strand, within MPMX20_00287at 306.911 kb on + strand, within MPMX20_00287at 306.919 kb on - strand, within MPMX20_00287at 306.919 kb on - strand, within MPMX20_00287at 306.919 kb on - strand, within MPMX20_00287at 306.937 kb on - strand, within MPMX20_00287at 307.051 kb on - strandat 307.051 kb on - strandat 307.127 kb on + strand, within MPMX20_00288at 307.233 kb on - strand, within MPMX20_00288at 307.233 kb on - strand, within MPMX20_00288at 307.253 kb on + strand, within MPMX20_00288at 307.259 kb on + strand, within MPMX20_00288at 307.267 kb on - strand, within MPMX20_00288at 307.267 kb on - strand, within MPMX20_00288at 307.305 kb on + strand, within MPMX20_00288at 307.313 kb on - strand, within MPMX20_00288at 307.365 kb on + strand, within MPMX20_00288

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with AMD2732
remove
304,760 + MPMX20_00285 0.50 +2.3
304,908 + MPMX20_00285 0.59 -0.2
304,908 + MPMX20_00285 0.59 +2.3
304,916 - MPMX20_00285 0.59 +0.4
304,916 - MPMX20_00285 0.59 -1.0
304,916 - MPMX20_00285 0.59 +0.7
304,921 - MPMX20_00285 0.59 -0.3
305,015 + MPMX20_00285 0.65 +0.5
305,015 + MPMX20_00285 0.65 -1.6
305,082 - MPMX20_00285 0.69 -1.8
305,243 - MPMX20_00285 0.79 -1.0
305,243 - MPMX20_00285 0.79 -0.6
305,250 - MPMX20_00285 0.79 -0.9
305,298 - MPMX20_00285 0.82 -0.7
305,324 + MPMX20_00285 0.84 -1.4
305,361 - MPMX20_00285 0.86 +0.9
305,485 + -1.2
305,487 + -1.0
305,495 - -0.3
305,548 + +1.3
305,618 - +0.6
305,620 - -0.0
305,635 + -0.1
305,643 - +1.3
305,643 - +1.3
305,644 - -0.7
305,663 - +0.4
305,669 + -0.6
305,681 + -0.0
305,682 - -0.8
305,761 - MPMX20_00286 0.14 -1.8
305,822 + MPMX20_00286 0.21 -0.0
305,877 + MPMX20_00286 0.27 -1.0
305,975 - MPMX20_00286 0.38 +0.3
305,990 - MPMX20_00286 0.40 -0.3
306,002 + MPMX20_00286 0.41 -1.8
306,129 - MPMX20_00286 0.56 -1.9
306,322 + MPMX20_00286 0.78 -1.1
306,359 - MPMX20_00286 0.82 -0.3
306,391 - MPMX20_00286 0.85 -0.1
306,432 - +0.7
306,456 - -1.3
306,463 + -1.0
306,471 - +2.3
306,506 + +1.3
306,514 - -2.0
306,514 - -2.6
306,540 - +1.5
306,540 - +1.7
306,540 - +2.7
306,583 + +0.3
306,591 - +0.2
306,626 - -0.9
306,631 + -0.1
306,631 + +0.3
306,631 + +0.8
306,639 - +0.7
306,639 - +0.0
306,666 + MPMX20_00287 0.11 -0.9
306,785 + MPMX20_00287 0.40 -0.8
306,785 + MPMX20_00287 0.40 +2.0
306,793 - MPMX20_00287 0.42 -0.4
306,809 + MPMX20_00287 0.45 +0.2
306,816 - MPMX20_00287 0.47 +0.4
306,864 - MPMX20_00287 0.59 +0.5
306,886 + MPMX20_00287 0.64 -0.9
306,893 + MPMX20_00287 0.66 +2.3
306,911 + MPMX20_00287 0.70 -2.0
306,911 + MPMX20_00287 0.70 +2.3
306,919 - MPMX20_00287 0.72 -0.1
306,919 - MPMX20_00287 0.72 -0.3
306,919 - MPMX20_00287 0.72 +0.1
306,937 - MPMX20_00287 0.77 -1.9
307,051 - +2.9
307,051 - -0.9
307,127 + MPMX20_00288 0.15 -0.9
307,233 - MPMX20_00288 0.30 +0.1
307,233 - MPMX20_00288 0.30 +2.3
307,253 + MPMX20_00288 0.33 +1.1
307,259 + MPMX20_00288 0.34 +0.3
307,267 - MPMX20_00288 0.35 +0.3
307,267 - MPMX20_00288 0.35 +0.3
307,305 + MPMX20_00288 0.41 -1.5
307,313 - MPMX20_00288 0.42 +0.3
307,365 + MPMX20_00288 0.49 -2.4

Or see this region's nucleotide sequence