Experiment: 0.1X LB plate, 1:1 coculture with Pseudomonas silesiensis TBS_010
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04668 and MPMX20_04669 are separated by 290 nucleotides MPMX20_04669 and MPMX20_04670 overlap by 4 nucleotides MPMX20_04670 and MPMX20_04671 are separated by 161 nucleotides
MPMX20_04668: MPMX20_04668 - hypothetical protein, at 19,155 to 19,295
_04668
MPMX20_04669: MPMX20_04669 - hypothetical protein, at 19,586 to 19,807
_04669
MPMX20_04670: MPMX20_04670 - hypothetical protein, at 19,804 to 20,127
_04670
MPMX20_04671: MPMX20_04671 - hypothetical protein, at 20,289 to 20,702
_04671
Position (kb) 19
20 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 18.168 kb on + strand at 18.168 kb on + strand at 18.188 kb on + strand at 18.203 kb on - strand at 18.263 kb on + strand at 18.263 kb on + strand at 18.263 kb on + strand at 18.263 kb on + strand at 18.265 kb on + strand at 18.265 kb on + strand at 18.265 kb on + strand at 18.265 kb on + strand at 18.270 kb on + strand at 18.275 kb on + strand at 18.293 kb on + strand at 18.299 kb on + strand at 18.299 kb on + strand at 18.299 kb on + strand at 18.299 kb on + strand at 18.299 kb on + strand at 18.299 kb on + strand at 18.299 kb on + strand at 18.299 kb on + strand at 18.299 kb on + strand at 18.299 kb on + strand at 18.299 kb on + strand at 18.299 kb on + strand at 18.299 kb on + strand at 18.299 kb on + strand at 18.299 kb on + strand at 18.299 kb on + strand at 18.299 kb on + strand at 18.299 kb on + strand at 18.299 kb on + strand at 18.299 kb on + strand at 18.299 kb on + strand at 18.299 kb on + strand at 18.299 kb on + strand at 18.299 kb on + strand at 18.299 kb on + strand at 18.299 kb on + strand at 18.299 kb on + strand at 18.299 kb on + strand at 18.299 kb on + strand at 18.299 kb on + strand at 18.299 kb on + strand at 18.299 kb on + strand at 18.299 kb on + strand at 18.299 kb on + strand at 18.299 kb on + strand at 18.300 kb on + strand at 18.301 kb on + strand at 18.301 kb on + strand at 18.305 kb on + strand at 18.305 kb on + strand at 18.305 kb on + strand at 18.305 kb on + strand at 18.305 kb on + strand at 18.305 kb on + strand at 18.305 kb on + strand at 18.305 kb on + strand at 18.305 kb on + strand at 18.307 kb on - strand at 18.309 kb on + strand at 18.309 kb on + strand at 18.309 kb on + strand at 18.309 kb on + strand at 18.320 kb on + strand at 18.326 kb on + strand at 18.326 kb on + strand at 18.326 kb on + strand at 18.326 kb on + strand at 18.326 kb on + strand at 18.326 kb on + strand at 18.326 kb on + strand at 18.326 kb on + strand at 18.327 kb on + strand at 18.327 kb on + strand at 18.353 kb on + strand at 18.358 kb on + strand at 18.358 kb on + strand at 18.415 kb on + strand at 18.415 kb on + strand at 18.416 kb on + strand at 18.416 kb on + strand at 18.416 kb on + strand at 18.416 kb on + strand at 18.419 kb on + strand at 18.424 kb on + strand at 18.424 kb on + strand at 18.424 kb on + strand at 18.424 kb on + strand at 18.424 kb on + strand at 18.426 kb on + strand at 18.426 kb on + strand at 18.426 kb on + strand at 18.426 kb on + strand at 18.426 kb on + strand at 18.426 kb on + strand at 18.431 kb on + strand at 18.431 kb on + strand at 18.431 kb on + strand at 18.431 kb on + strand at 18.432 kb on + strand at 18.439 kb on - strand at 18.460 kb on + strand at 18.480 kb on + strand at 18.492 kb on + strand at 18.492 kb on + strand at 18.492 kb on + strand at 18.492 kb on + strand at 18.492 kb on + strand at 18.492 kb on + strand at 18.492 kb on + strand at 18.492 kb on + strand at 18.492 kb on + strand at 18.492 kb on + strand at 18.492 kb on + strand at 18.492 kb on + strand at 18.497 kb on + strand at 18.513 kb on + strand at 18.575 kb on + strand at 18.575 kb on + strand at 18.583 kb on + strand at 18.595 kb on + strand at 18.595 kb on + strand at 18.595 kb on + strand at 18.598 kb on + strand at 18.598 kb on + strand at 18.598 kb on + strand at 18.598 kb on + strand at 18.598 kb on + strand at 18.610 kb on + strand at 18.610 kb on + strand at 18.610 kb on + strand at 18.610 kb on + strand at 18.610 kb on + strand at 18.610 kb on + strand at 18.610 kb on + strand at 18.610 kb on + strand at 18.610 kb on + strand at 18.610 kb on + strand at 18.610 kb on + strand at 18.610 kb on + strand at 18.610 kb on + strand at 18.610 kb on + strand at 18.610 kb on + strand at 18.875 kb on + strand at 18.878 kb on - strand at 19.246 kb on + strand, within MPMX20_04668 at 19.259 kb on + strand, within MPMX20_04668 at 19.274 kb on + strand, within MPMX20_04668 at 19.274 kb on + strand, within MPMX20_04668 at 19.274 kb on + strand, within MPMX20_04668 at 19.274 kb on + strand, within MPMX20_04668 at 19.284 kb on + strand at 19.291 kb on + strand at 19.354 kb on - strand at 19.356 kb on - strand at 19.455 kb on + strand at 19.753 kb on - strand, within MPMX20_04669 at 19.934 kb on - strand, within MPMX20_04670 at 20.030 kb on + strand, within MPMX20_04670 at 20.030 kb on + strand, within MPMX20_04670 at 20.090 kb on + strand, within MPMX20_04670 at 20.098 kb on + strand at 20.161 kb on + strand at 20.183 kb on + strand at 20.188 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Pseudomonas silesiensis TBS_010 remove 18,168 + -0.8 18,168 + -0.8 18,188 + -0.5 18,203 - +2.0 18,263 + -0.4 18,263 + +0.5 18,263 + +1.6 18,263 + +0.5 18,265 + +0.3 18,265 + -0.5 18,265 + +2.3 18,265 + -0.2 18,270 + +0.3 18,275 + -2.0 18,293 + +1.7 18,299 + -0.1 18,299 + +0.3 18,299 + -0.1 18,299 + +0.6 18,299 + -0.6 18,299 + +0.3 18,299 + -0.1 18,299 + -0.3 18,299 + +1.7 18,299 + +1.2 18,299 + -2.2 18,299 + +0.7 18,299 + +0.5 18,299 + -0.5 18,299 + +0.3 18,299 + -1.7 18,299 + +0.2 18,299 + +1.3 18,299 + +0.4 18,299 + -0.9 18,299 + -2.7 18,299 + +0.3 18,299 + -0.7 18,299 + +1.2 18,299 + +0.3 18,299 + -2.4 18,299 + -2.4 18,299 + -0.3 18,299 + +1.3 18,299 + -1.3 18,299 + -0.6 18,299 + -1.6 18,299 + -0.4 18,299 + -1.3 18,299 + -0.1 18,300 + +1.6 18,301 + +1.8 18,301 + +0.2 18,305 + +0.7 18,305 + -2.2 18,305 + -0.5 18,305 + -2.9 18,305 + +0.1 18,305 + +0.7 18,305 + +1.8 18,305 + +0.7 18,305 + -0.1 18,307 - +1.3 18,309 + -2.1 18,309 + -0.1 18,309 + -0.7 18,309 + +0.4 18,320 + +0.3 18,326 + +4.6 18,326 + +0.7 18,326 + +0.9 18,326 + -1.6 18,326 + +0.5 18,326 + -0.1 18,326 + -0.9 18,326 + +0.7 18,327 + +0.9 18,327 + +0.1 18,353 + -1.2 18,358 + -2.1 18,358 + +0.5 18,415 + +2.0 18,415 + -0.6 18,416 + -0.5 18,416 + -0.4 18,416 + -0.1 18,416 + -0.1 18,419 + +0.8 18,424 + +0.0 18,424 + -1.3 18,424 + +0.3 18,424 + +0.1 18,424 + +0.4 18,426 + +1.3 18,426 + -1.3 18,426 + -1.5 18,426 + -0.2 18,426 + +0.4 18,426 + -0.3 18,431 + -0.3 18,431 + -0.2 18,431 + +0.7 18,431 + -0.7 18,432 + -0.6 18,439 - +1.3 18,460 + +0.9 18,480 + +0.3 18,492 + +0.9 18,492 + -1.2 18,492 + -0.9 18,492 + -0.5 18,492 + -1.1 18,492 + -1.3 18,492 + +0.3 18,492 + -0.2 18,492 + -1.1 18,492 + +1.8 18,492 + -0.2 18,492 + +3.0 18,497 + -1.3 18,513 + -1.0 18,575 + -0.7 18,575 + +0.7 18,583 + -0.8 18,595 + -2.5 18,595 + -0.3 18,595 + -0.3 18,598 + -2.3 18,598 + -0.9 18,598 + -1.1 18,598 + +1.3 18,598 + +0.4 18,610 + -0.5 18,610 + -0.5 18,610 + -1.0 18,610 + +0.4 18,610 + -1.2 18,610 + -2.4 18,610 + +0.3 18,610 + -1.2 18,610 + -0.7 18,610 + +1.4 18,610 + -0.6 18,610 + +2.0 18,610 + -1.0 18,610 + -1.2 18,610 + +0.9 18,875 + +0.5 18,878 - -0.1 19,246 + MPMX20_04668 0.65 -0.5 19,259 + MPMX20_04668 0.74 -2.1 19,274 + MPMX20_04668 0.84 -0.5 19,274 + MPMX20_04668 0.84 +0.1 19,274 + MPMX20_04668 0.84 -1.9 19,274 + MPMX20_04668 0.84 -0.6 19,284 + -0.8 19,291 + +0.5 19,354 - +0.3 19,356 - +1.3 19,455 + +0.3 19,753 - MPMX20_04669 0.75 +0.0 19,934 - MPMX20_04670 0.40 -2.4 20,030 + MPMX20_04670 0.70 +0.3 20,030 + MPMX20_04670 0.70 -0.0 20,090 + MPMX20_04670 0.88 -0.3 20,098 + -0.1 20,161 + +3.3 20,183 + +0.1 20,188 + -0.9
Or see this region's nucleotide sequence