Experiment: 0.1X LB plate, 1:1 coculture with Pseudomonas silesiensis TBS_010
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03671 and MPMX20_03672 are separated by 349 nucleotides MPMX20_03672 and MPMX20_03673 are separated by 202 nucleotides MPMX20_03673 and MPMX20_03674 overlap by 1 nucleotides MPMX20_03674 and MPMX20_03675 overlap by 10 nucleotides
MPMX20_03671: MPMX20_03671 - Glycine cleavage system transcriptional activator, at 3,866,240 to 3,867,157
_03671
MPMX20_03672: MPMX20_03672 - putative lipoprotein YgdR, at 3,867,507 to 3,867,734
_03672
MPMX20_03673: MPMX20_03673 - Cysteine desulfurase CsdA, at 3,867,937 to 3,869,142
_03673
MPMX20_03674: MPMX20_03674 - Sulfur acceptor protein CsdE, at 3,869,142 to 3,869,588
_03674
MPMX20_03675: MPMX20_03675 - tRNA threonylcarbamoyladenosine dehydratase, at 3,869,579 to 3,870,385
_03675
Position (kb)
3867
3868
3869
3870 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3866.977 kb on + strand, within MPMX20_03671 at 3866.987 kb on - strand, within MPMX20_03671 at 3867.004 kb on + strand, within MPMX20_03671 at 3867.004 kb on + strand, within MPMX20_03671 at 3867.004 kb on + strand, within MPMX20_03671 at 3867.012 kb on - strand, within MPMX20_03671 at 3867.012 kb on - strand, within MPMX20_03671 at 3867.012 kb on - strand, within MPMX20_03671 at 3867.129 kb on - strand at 3867.137 kb on - strand at 3867.148 kb on + strand at 3867.350 kb on + strand at 3867.358 kb on - strand at 3867.358 kb on - strand at 3867.363 kb on - strand at 3867.389 kb on + strand at 3867.389 kb on + strand at 3867.433 kb on + strand at 3867.433 kb on + strand at 3867.433 kb on + strand at 3867.455 kb on - strand at 3867.455 kb on - strand at 3867.456 kb on + strand at 3867.461 kb on + strand at 3867.539 kb on - strand, within MPMX20_03672 at 3867.544 kb on - strand, within MPMX20_03672 at 3867.565 kb on - strand, within MPMX20_03672 at 3867.565 kb on - strand, within MPMX20_03672 at 3867.607 kb on - strand, within MPMX20_03672 at 3867.666 kb on - strand, within MPMX20_03672 at 3867.666 kb on - strand, within MPMX20_03672 at 3867.686 kb on + strand, within MPMX20_03672 at 3867.686 kb on + strand, within MPMX20_03672 at 3867.686 kb on + strand, within MPMX20_03672 at 3867.686 kb on + strand, within MPMX20_03672 at 3867.686 kb on + strand, within MPMX20_03672 at 3867.693 kb on + strand, within MPMX20_03672 at 3867.693 kb on + strand, within MPMX20_03672 at 3867.693 kb on + strand, within MPMX20_03672 at 3867.694 kb on - strand, within MPMX20_03672 at 3867.694 kb on - strand, within MPMX20_03672 at 3867.694 kb on - strand, within MPMX20_03672 at 3867.701 kb on - strand, within MPMX20_03672 at 3867.705 kb on + strand, within MPMX20_03672 at 3867.711 kb on + strand, within MPMX20_03672 at 3867.713 kb on - strand at 3867.722 kb on - strand at 3867.752 kb on + strand at 3867.760 kb on - strand at 3867.792 kb on - strand at 3867.792 kb on - strand at 3867.792 kb on - strand at 3867.804 kb on - strand at 3867.880 kb on - strand at 3867.881 kb on + strand at 3867.881 kb on + strand at 3867.881 kb on + strand at 3867.958 kb on - strand at 3867.960 kb on + strand at 3867.961 kb on - strand at 3867.968 kb on - strand at 3867.972 kb on + strand at 3867.972 kb on + strand at 3867.972 kb on + strand at 3867.978 kb on - strand at 3867.980 kb on - strand at 3867.980 kb on - strand at 3867.995 kb on + strand at 3868.023 kb on - strand at 3868.028 kb on + strand at 3868.049 kb on - strand at 3868.059 kb on + strand, within MPMX20_03673 at 3868.059 kb on + strand, within MPMX20_03673 at 3868.121 kb on - strand, within MPMX20_03673 at 3868.128 kb on + strand, within MPMX20_03673 at 3868.128 kb on + strand, within MPMX20_03673 at 3868.136 kb on - strand, within MPMX20_03673 at 3868.156 kb on + strand, within MPMX20_03673 at 3868.221 kb on - strand, within MPMX20_03673 at 3868.228 kb on + strand, within MPMX20_03673 at 3868.228 kb on + strand, within MPMX20_03673 at 3868.233 kb on + strand, within MPMX20_03673 at 3868.236 kb on - strand, within MPMX20_03673 at 3868.241 kb on - strand, within MPMX20_03673 at 3868.291 kb on - strand, within MPMX20_03673 at 3868.471 kb on - strand, within MPMX20_03673 at 3868.528 kb on + strand, within MPMX20_03673 at 3868.536 kb on - strand, within MPMX20_03673 at 3868.610 kb on + strand, within MPMX20_03673 at 3868.618 kb on - strand, within MPMX20_03673 at 3868.619 kb on + strand, within MPMX20_03673 at 3868.689 kb on - strand, within MPMX20_03673 at 3868.711 kb on - strand, within MPMX20_03673 at 3868.711 kb on - strand, within MPMX20_03673 at 3868.739 kb on - strand, within MPMX20_03673 at 3868.761 kb on - strand, within MPMX20_03673 at 3868.811 kb on - strand, within MPMX20_03673 at 3868.910 kb on + strand, within MPMX20_03673 at 3868.918 kb on - strand, within MPMX20_03673 at 3868.948 kb on - strand, within MPMX20_03673 at 3868.961 kb on - strand, within MPMX20_03673 at 3868.982 kb on + strand, within MPMX20_03673 at 3869.007 kb on - strand, within MPMX20_03673 at 3869.007 kb on - strand, within MPMX20_03673 at 3869.050 kb on - strand at 3869.068 kb on - strand at 3869.070 kb on + strand at 3869.100 kb on + strand at 3869.108 kb on - strand at 3869.386 kb on + strand, within MPMX20_03674 at 3869.446 kb on - strand, within MPMX20_03674 at 3869.510 kb on + strand, within MPMX20_03674 at 3869.510 kb on + strand, within MPMX20_03674 at 3869.527 kb on + strand, within MPMX20_03674 at 3869.564 kb on - strand at 3869.595 kb on + strand at 3869.941 kb on + strand, within MPMX20_03675 at 3870.017 kb on + strand, within MPMX20_03675 at 3870.017 kb on + strand, within MPMX20_03675 at 3870.017 kb on + strand, within MPMX20_03675 at 3870.035 kb on - strand, within MPMX20_03675 at 3870.076 kb on - strand, within MPMX20_03675 at 3870.129 kb on + strand, within MPMX20_03675
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Pseudomonas silesiensis TBS_010 remove 3,866,977 + MPMX20_03671 0.80 -0.1 3,866,987 - MPMX20_03671 0.81 -0.6 3,867,004 + MPMX20_03671 0.83 -0.2 3,867,004 + MPMX20_03671 0.83 -0.6 3,867,004 + MPMX20_03671 0.83 +0.6 3,867,012 - MPMX20_03671 0.84 -1.2 3,867,012 - MPMX20_03671 0.84 -2.0 3,867,012 - MPMX20_03671 0.84 -2.0 3,867,129 - -0.5 3,867,137 - -0.6 3,867,148 + -1.2 3,867,350 + -0.5 3,867,358 - -0.8 3,867,358 - -0.0 3,867,363 - +0.4 3,867,389 + -0.6 3,867,389 + -1.2 3,867,433 + -1.3 3,867,433 + -0.7 3,867,433 + -2.1 3,867,455 - -1.1 3,867,455 - +0.9 3,867,456 + +1.6 3,867,461 + -0.5 3,867,539 - MPMX20_03672 0.14 -0.0 3,867,544 - MPMX20_03672 0.16 +0.4 3,867,565 - MPMX20_03672 0.25 -0.1 3,867,565 - MPMX20_03672 0.25 -0.0 3,867,607 - MPMX20_03672 0.44 +1.5 3,867,666 - MPMX20_03672 0.70 -0.9 3,867,666 - MPMX20_03672 0.70 -0.3 3,867,686 + MPMX20_03672 0.79 +0.4 3,867,686 + MPMX20_03672 0.79 -1.0 3,867,686 + MPMX20_03672 0.79 +2.7 3,867,686 + MPMX20_03672 0.79 +0.2 3,867,686 + MPMX20_03672 0.79 +2.4 3,867,693 + MPMX20_03672 0.82 -0.1 3,867,693 + MPMX20_03672 0.82 +0.4 3,867,693 + MPMX20_03672 0.82 +0.7 3,867,694 - MPMX20_03672 0.82 -0.8 3,867,694 - MPMX20_03672 0.82 -1.3 3,867,694 - MPMX20_03672 0.82 -0.2 3,867,701 - MPMX20_03672 0.85 +0.6 3,867,705 + MPMX20_03672 0.87 -0.5 3,867,711 + MPMX20_03672 0.89 -0.4 3,867,713 - -0.2 3,867,722 - -1.1 3,867,752 + -0.1 3,867,760 - -0.3 3,867,792 - -0.0 3,867,792 - +3.0 3,867,792 - +0.9 3,867,804 - -0.8 3,867,880 - -0.1 3,867,881 + -0.8 3,867,881 + -0.8 3,867,881 + +1.2 3,867,958 - -1.2 3,867,960 + -0.5 3,867,961 - +0.3 3,867,968 - +0.2 3,867,972 + -2.1 3,867,972 + -0.2 3,867,972 + +1.1 3,867,978 - +0.7 3,867,980 - -0.4 3,867,980 - -2.5 3,867,995 + +0.6 3,868,023 - +0.2 3,868,028 + +0.2 3,868,049 - +0.4 3,868,059 + MPMX20_03673 0.10 +0.4 3,868,059 + MPMX20_03673 0.10 -0.3 3,868,121 - MPMX20_03673 0.15 +0.6 3,868,128 + MPMX20_03673 0.16 -1.0 3,868,128 + MPMX20_03673 0.16 +3.0 3,868,136 - MPMX20_03673 0.17 +1.8 3,868,156 + MPMX20_03673 0.18 -0.5 3,868,221 - MPMX20_03673 0.24 -1.3 3,868,228 + MPMX20_03673 0.24 -0.6 3,868,228 + MPMX20_03673 0.24 +2.0 3,868,233 + MPMX20_03673 0.25 +0.4 3,868,236 - MPMX20_03673 0.25 -0.1 3,868,241 - MPMX20_03673 0.25 -0.7 3,868,291 - MPMX20_03673 0.29 -0.2 3,868,471 - MPMX20_03673 0.44 -0.6 3,868,528 + MPMX20_03673 0.49 -1.4 3,868,536 - MPMX20_03673 0.50 +2.0 3,868,610 + MPMX20_03673 0.56 -1.3 3,868,618 - MPMX20_03673 0.56 -0.6 3,868,619 + MPMX20_03673 0.57 +1.0 3,868,689 - MPMX20_03673 0.62 +0.2 3,868,711 - MPMX20_03673 0.64 +1.0 3,868,711 - MPMX20_03673 0.64 +1.0 3,868,739 - MPMX20_03673 0.67 +0.1 3,868,761 - MPMX20_03673 0.68 +0.5 3,868,811 - MPMX20_03673 0.72 +1.1 3,868,910 + MPMX20_03673 0.81 +0.2 3,868,918 - MPMX20_03673 0.81 -0.2 3,868,948 - MPMX20_03673 0.84 +0.8 3,868,961 - MPMX20_03673 0.85 -0.2 3,868,982 + MPMX20_03673 0.87 +1.2 3,869,007 - MPMX20_03673 0.89 +0.9 3,869,007 - MPMX20_03673 0.89 -0.2 3,869,050 - +0.4 3,869,068 - +2.2 3,869,070 + -0.2 3,869,100 + +0.4 3,869,108 - -0.6 3,869,386 + MPMX20_03674 0.55 +0.5 3,869,446 - MPMX20_03674 0.68 -0.8 3,869,510 + MPMX20_03674 0.82 -1.5 3,869,510 + MPMX20_03674 0.82 -0.5 3,869,527 + MPMX20_03674 0.86 -1.3 3,869,564 - +0.1 3,869,595 + +0.8 3,869,941 + MPMX20_03675 0.45 -0.3 3,870,017 + MPMX20_03675 0.54 +0.7 3,870,017 + MPMX20_03675 0.54 +1.7 3,870,017 + MPMX20_03675 0.54 -0.0 3,870,035 - MPMX20_03675 0.57 +0.8 3,870,076 - MPMX20_03675 0.62 -0.3 3,870,129 + MPMX20_03675 0.68 -1.8
Or see this region's nucleotide sequence