Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03673

Experiment: 0.1X LB plate, 1:1 coculture with Pseudomonas silesiensis TBS_010

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03671 and MPMX20_03672 are separated by 349 nucleotidesMPMX20_03672 and MPMX20_03673 are separated by 202 nucleotidesMPMX20_03673 and MPMX20_03674 overlap by 1 nucleotidesMPMX20_03674 and MPMX20_03675 overlap by 10 nucleotides MPMX20_03671: MPMX20_03671 - Glycine cleavage system transcriptional activator, at 3,866,240 to 3,867,157 _03671 MPMX20_03672: MPMX20_03672 - putative lipoprotein YgdR, at 3,867,507 to 3,867,734 _03672 MPMX20_03673: MPMX20_03673 - Cysteine desulfurase CsdA, at 3,867,937 to 3,869,142 _03673 MPMX20_03674: MPMX20_03674 - Sulfur acceptor protein CsdE, at 3,869,142 to 3,869,588 _03674 MPMX20_03675: MPMX20_03675 - tRNA threonylcarbamoyladenosine dehydratase, at 3,869,579 to 3,870,385 _03675 Position (kb) 3867 3868 3869 3870Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3866.977 kb on + strand, within MPMX20_03671at 3866.987 kb on - strand, within MPMX20_03671at 3867.004 kb on + strand, within MPMX20_03671at 3867.004 kb on + strand, within MPMX20_03671at 3867.004 kb on + strand, within MPMX20_03671at 3867.012 kb on - strand, within MPMX20_03671at 3867.012 kb on - strand, within MPMX20_03671at 3867.012 kb on - strand, within MPMX20_03671at 3867.129 kb on - strandat 3867.137 kb on - strandat 3867.148 kb on + strandat 3867.350 kb on + strandat 3867.358 kb on - strandat 3867.358 kb on - strandat 3867.363 kb on - strandat 3867.389 kb on + strandat 3867.389 kb on + strandat 3867.433 kb on + strandat 3867.433 kb on + strandat 3867.433 kb on + strandat 3867.455 kb on - strandat 3867.455 kb on - strandat 3867.456 kb on + strandat 3867.461 kb on + strandat 3867.539 kb on - strand, within MPMX20_03672at 3867.544 kb on - strand, within MPMX20_03672at 3867.565 kb on - strand, within MPMX20_03672at 3867.565 kb on - strand, within MPMX20_03672at 3867.607 kb on - strand, within MPMX20_03672at 3867.666 kb on - strand, within MPMX20_03672at 3867.666 kb on - strand, within MPMX20_03672at 3867.686 kb on + strand, within MPMX20_03672at 3867.686 kb on + strand, within MPMX20_03672at 3867.686 kb on + strand, within MPMX20_03672at 3867.686 kb on + strand, within MPMX20_03672at 3867.686 kb on + strand, within MPMX20_03672at 3867.693 kb on + strand, within MPMX20_03672at 3867.693 kb on + strand, within MPMX20_03672at 3867.693 kb on + strand, within MPMX20_03672at 3867.694 kb on - strand, within MPMX20_03672at 3867.694 kb on - strand, within MPMX20_03672at 3867.694 kb on - strand, within MPMX20_03672at 3867.701 kb on - strand, within MPMX20_03672at 3867.705 kb on + strand, within MPMX20_03672at 3867.711 kb on + strand, within MPMX20_03672at 3867.713 kb on - strandat 3867.722 kb on - strandat 3867.752 kb on + strandat 3867.760 kb on - strandat 3867.792 kb on - strandat 3867.792 kb on - strandat 3867.792 kb on - strandat 3867.804 kb on - strandat 3867.880 kb on - strandat 3867.881 kb on + strandat 3867.881 kb on + strandat 3867.881 kb on + strandat 3867.958 kb on - strandat 3867.960 kb on + strandat 3867.961 kb on - strandat 3867.968 kb on - strandat 3867.972 kb on + strandat 3867.972 kb on + strandat 3867.972 kb on + strandat 3867.978 kb on - strandat 3867.980 kb on - strandat 3867.980 kb on - strandat 3867.995 kb on + strandat 3868.023 kb on - strandat 3868.028 kb on + strandat 3868.049 kb on - strandat 3868.059 kb on + strand, within MPMX20_03673at 3868.059 kb on + strand, within MPMX20_03673at 3868.121 kb on - strand, within MPMX20_03673at 3868.128 kb on + strand, within MPMX20_03673at 3868.128 kb on + strand, within MPMX20_03673at 3868.136 kb on - strand, within MPMX20_03673at 3868.156 kb on + strand, within MPMX20_03673at 3868.221 kb on - strand, within MPMX20_03673at 3868.228 kb on + strand, within MPMX20_03673at 3868.228 kb on + strand, within MPMX20_03673at 3868.233 kb on + strand, within MPMX20_03673at 3868.236 kb on - strand, within MPMX20_03673at 3868.241 kb on - strand, within MPMX20_03673at 3868.291 kb on - strand, within MPMX20_03673at 3868.471 kb on - strand, within MPMX20_03673at 3868.528 kb on + strand, within MPMX20_03673at 3868.536 kb on - strand, within MPMX20_03673at 3868.610 kb on + strand, within MPMX20_03673at 3868.618 kb on - strand, within MPMX20_03673at 3868.619 kb on + strand, within MPMX20_03673at 3868.689 kb on - strand, within MPMX20_03673at 3868.711 kb on - strand, within MPMX20_03673at 3868.711 kb on - strand, within MPMX20_03673at 3868.739 kb on - strand, within MPMX20_03673at 3868.761 kb on - strand, within MPMX20_03673at 3868.811 kb on - strand, within MPMX20_03673at 3868.910 kb on + strand, within MPMX20_03673at 3868.918 kb on - strand, within MPMX20_03673at 3868.948 kb on - strand, within MPMX20_03673at 3868.961 kb on - strand, within MPMX20_03673at 3868.982 kb on + strand, within MPMX20_03673at 3869.007 kb on - strand, within MPMX20_03673at 3869.007 kb on - strand, within MPMX20_03673at 3869.050 kb on - strandat 3869.068 kb on - strandat 3869.070 kb on + strandat 3869.100 kb on + strandat 3869.108 kb on - strandat 3869.386 kb on + strand, within MPMX20_03674at 3869.446 kb on - strand, within MPMX20_03674at 3869.510 kb on + strand, within MPMX20_03674at 3869.510 kb on + strand, within MPMX20_03674at 3869.527 kb on + strand, within MPMX20_03674at 3869.564 kb on - strandat 3869.595 kb on + strandat 3869.941 kb on + strand, within MPMX20_03675at 3870.017 kb on + strand, within MPMX20_03675at 3870.017 kb on + strand, within MPMX20_03675at 3870.017 kb on + strand, within MPMX20_03675at 3870.035 kb on - strand, within MPMX20_03675at 3870.076 kb on - strand, within MPMX20_03675at 3870.129 kb on + strand, within MPMX20_03675

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Pseudomonas silesiensis TBS_010
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3,866,977 + MPMX20_03671 0.80 -0.1
3,866,987 - MPMX20_03671 0.81 -0.6
3,867,004 + MPMX20_03671 0.83 -0.2
3,867,004 + MPMX20_03671 0.83 -0.6
3,867,004 + MPMX20_03671 0.83 +0.6
3,867,012 - MPMX20_03671 0.84 -1.2
3,867,012 - MPMX20_03671 0.84 -2.0
3,867,012 - MPMX20_03671 0.84 -2.0
3,867,129 - -0.5
3,867,137 - -0.6
3,867,148 + -1.2
3,867,350 + -0.5
3,867,358 - -0.8
3,867,358 - -0.0
3,867,363 - +0.4
3,867,389 + -0.6
3,867,389 + -1.2
3,867,433 + -1.3
3,867,433 + -0.7
3,867,433 + -2.1
3,867,455 - -1.1
3,867,455 - +0.9
3,867,456 + +1.6
3,867,461 + -0.5
3,867,539 - MPMX20_03672 0.14 -0.0
3,867,544 - MPMX20_03672 0.16 +0.4
3,867,565 - MPMX20_03672 0.25 -0.1
3,867,565 - MPMX20_03672 0.25 -0.0
3,867,607 - MPMX20_03672 0.44 +1.5
3,867,666 - MPMX20_03672 0.70 -0.9
3,867,666 - MPMX20_03672 0.70 -0.3
3,867,686 + MPMX20_03672 0.79 +0.4
3,867,686 + MPMX20_03672 0.79 -1.0
3,867,686 + MPMX20_03672 0.79 +2.7
3,867,686 + MPMX20_03672 0.79 +0.2
3,867,686 + MPMX20_03672 0.79 +2.4
3,867,693 + MPMX20_03672 0.82 -0.1
3,867,693 + MPMX20_03672 0.82 +0.4
3,867,693 + MPMX20_03672 0.82 +0.7
3,867,694 - MPMX20_03672 0.82 -0.8
3,867,694 - MPMX20_03672 0.82 -1.3
3,867,694 - MPMX20_03672 0.82 -0.2
3,867,701 - MPMX20_03672 0.85 +0.6
3,867,705 + MPMX20_03672 0.87 -0.5
3,867,711 + MPMX20_03672 0.89 -0.4
3,867,713 - -0.2
3,867,722 - -1.1
3,867,752 + -0.1
3,867,760 - -0.3
3,867,792 - -0.0
3,867,792 - +3.0
3,867,792 - +0.9
3,867,804 - -0.8
3,867,880 - -0.1
3,867,881 + -0.8
3,867,881 + -0.8
3,867,881 + +1.2
3,867,958 - -1.2
3,867,960 + -0.5
3,867,961 - +0.3
3,867,968 - +0.2
3,867,972 + -2.1
3,867,972 + -0.2
3,867,972 + +1.1
3,867,978 - +0.7
3,867,980 - -0.4
3,867,980 - -2.5
3,867,995 + +0.6
3,868,023 - +0.2
3,868,028 + +0.2
3,868,049 - +0.4
3,868,059 + MPMX20_03673 0.10 +0.4
3,868,059 + MPMX20_03673 0.10 -0.3
3,868,121 - MPMX20_03673 0.15 +0.6
3,868,128 + MPMX20_03673 0.16 -1.0
3,868,128 + MPMX20_03673 0.16 +3.0
3,868,136 - MPMX20_03673 0.17 +1.8
3,868,156 + MPMX20_03673 0.18 -0.5
3,868,221 - MPMX20_03673 0.24 -1.3
3,868,228 + MPMX20_03673 0.24 -0.6
3,868,228 + MPMX20_03673 0.24 +2.0
3,868,233 + MPMX20_03673 0.25 +0.4
3,868,236 - MPMX20_03673 0.25 -0.1
3,868,241 - MPMX20_03673 0.25 -0.7
3,868,291 - MPMX20_03673 0.29 -0.2
3,868,471 - MPMX20_03673 0.44 -0.6
3,868,528 + MPMX20_03673 0.49 -1.4
3,868,536 - MPMX20_03673 0.50 +2.0
3,868,610 + MPMX20_03673 0.56 -1.3
3,868,618 - MPMX20_03673 0.56 -0.6
3,868,619 + MPMX20_03673 0.57 +1.0
3,868,689 - MPMX20_03673 0.62 +0.2
3,868,711 - MPMX20_03673 0.64 +1.0
3,868,711 - MPMX20_03673 0.64 +1.0
3,868,739 - MPMX20_03673 0.67 +0.1
3,868,761 - MPMX20_03673 0.68 +0.5
3,868,811 - MPMX20_03673 0.72 +1.1
3,868,910 + MPMX20_03673 0.81 +0.2
3,868,918 - MPMX20_03673 0.81 -0.2
3,868,948 - MPMX20_03673 0.84 +0.8
3,868,961 - MPMX20_03673 0.85 -0.2
3,868,982 + MPMX20_03673 0.87 +1.2
3,869,007 - MPMX20_03673 0.89 +0.9
3,869,007 - MPMX20_03673 0.89 -0.2
3,869,050 - +0.4
3,869,068 - +2.2
3,869,070 + -0.2
3,869,100 + +0.4
3,869,108 - -0.6
3,869,386 + MPMX20_03674 0.55 +0.5
3,869,446 - MPMX20_03674 0.68 -0.8
3,869,510 + MPMX20_03674 0.82 -1.5
3,869,510 + MPMX20_03674 0.82 -0.5
3,869,527 + MPMX20_03674 0.86 -1.3
3,869,564 - +0.1
3,869,595 + +0.8
3,869,941 + MPMX20_03675 0.45 -0.3
3,870,017 + MPMX20_03675 0.54 +0.7
3,870,017 + MPMX20_03675 0.54 +1.7
3,870,017 + MPMX20_03675 0.54 -0.0
3,870,035 - MPMX20_03675 0.57 +0.8
3,870,076 - MPMX20_03675 0.62 -0.3
3,870,129 + MPMX20_03675 0.68 -1.8

Or see this region's nucleotide sequence