Experiment: 0.1X LB plate, 1:1 coculture with Pseudomonas silesiensis TBS_010
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02390 and MPMX20_02391 are separated by 143 nucleotides MPMX20_02391 and MPMX20_02392 are separated by 42 nucleotides
MPMX20_02390: MPMX20_02390 - Arylamine N-acetyltransferase, at 2,523,096 to 2,523,941
_02390
MPMX20_02391: MPMX20_02391 - hypothetical protein, at 2,524,085 to 2,524,660
_02391
MPMX20_02392: MPMX20_02392 - Elongation factor G, at 2,524,703 to 2,526,802
_02392
Position (kb)
2524
2525 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6 at 2523.132 kb on + strand at 2523.188 kb on + strand, within MPMX20_02390 at 2523.208 kb on + strand, within MPMX20_02390 at 2523.208 kb on + strand, within MPMX20_02390 at 2523.260 kb on + strand, within MPMX20_02390 at 2523.286 kb on - strand, within MPMX20_02390 at 2523.286 kb on - strand, within MPMX20_02390 at 2523.300 kb on - strand, within MPMX20_02390 at 2523.335 kb on - strand, within MPMX20_02390 at 2523.370 kb on + strand, within MPMX20_02390 at 2523.397 kb on + strand, within MPMX20_02390 at 2523.445 kb on - strand, within MPMX20_02390 at 2523.591 kb on - strand, within MPMX20_02390 at 2523.641 kb on + strand, within MPMX20_02390 at 2523.651 kb on + strand, within MPMX20_02390 at 2523.651 kb on + strand, within MPMX20_02390 at 2523.651 kb on + strand, within MPMX20_02390 at 2523.659 kb on - strand, within MPMX20_02390 at 2523.659 kb on - strand, within MPMX20_02390 at 2523.659 kb on - strand, within MPMX20_02390 at 2523.659 kb on - strand, within MPMX20_02390 at 2523.659 kb on - strand, within MPMX20_02390 at 2523.666 kb on + strand, within MPMX20_02390 at 2523.674 kb on - strand, within MPMX20_02390 at 2523.674 kb on - strand, within MPMX20_02390 at 2523.722 kb on - strand, within MPMX20_02390 at 2523.955 kb on + strand at 2524.032 kb on - strand at 2524.079 kb on + strand at 2524.087 kb on - strand at 2524.148 kb on - strand, within MPMX20_02391 at 2524.148 kb on - strand, within MPMX20_02391 at 2524.148 kb on - strand, within MPMX20_02391 at 2524.148 kb on - strand, within MPMX20_02391 at 2524.189 kb on + strand, within MPMX20_02391 at 2524.197 kb on - strand, within MPMX20_02391 at 2524.224 kb on - strand, within MPMX20_02391 at 2524.239 kb on + strand, within MPMX20_02391 at 2524.275 kb on + strand, within MPMX20_02391 at 2524.279 kb on + strand, within MPMX20_02391 at 2524.403 kb on + strand, within MPMX20_02391 at 2524.578 kb on + strand, within MPMX20_02391 at 2524.586 kb on - strand, within MPMX20_02391 at 2524.591 kb on - strand, within MPMX20_02391 at 2524.593 kb on - strand, within MPMX20_02391 at 2524.597 kb on + strand, within MPMX20_02391 at 2524.737 kb on + strand at 2524.775 kb on + strand at 2524.800 kb on + strand at 2524.881 kb on + strand at 2524.920 kb on + strand, within MPMX20_02392 at 2524.920 kb on + strand, within MPMX20_02392 at 2524.965 kb on + strand, within MPMX20_02392 at 2524.983 kb on - strand, within MPMX20_02392 at 2525.011 kb on + strand, within MPMX20_02392 at 2525.073 kb on + strand, within MPMX20_02392 at 2525.081 kb on + strand, within MPMX20_02392 at 2525.081 kb on + strand, within MPMX20_02392 at 2525.089 kb on - strand, within MPMX20_02392 at 2525.132 kb on + strand, within MPMX20_02392 at 2525.140 kb on - strand, within MPMX20_02392 at 2525.140 kb on - strand, within MPMX20_02392 at 2525.167 kb on + strand, within MPMX20_02392 at 2525.167 kb on + strand, within MPMX20_02392 at 2525.182 kb on + strand, within MPMX20_02392 at 2525.182 kb on + strand, within MPMX20_02392 at 2525.190 kb on - strand, within MPMX20_02392 at 2525.239 kb on + strand, within MPMX20_02392 at 2525.239 kb on + strand, within MPMX20_02392 at 2525.257 kb on - strand, within MPMX20_02392 at 2525.262 kb on - strand, within MPMX20_02392 at 2525.262 kb on - strand, within MPMX20_02392 at 2525.264 kb on + strand, within MPMX20_02392 at 2525.264 kb on + strand, within MPMX20_02392 at 2525.272 kb on - strand, within MPMX20_02392 at 2525.277 kb on - strand, within MPMX20_02392 at 2525.304 kb on + strand, within MPMX20_02392 at 2525.329 kb on + strand, within MPMX20_02392 at 2525.339 kb on - strand, within MPMX20_02392 at 2525.368 kb on + strand, within MPMX20_02392 at 2525.461 kb on - strand, within MPMX20_02392 at 2525.475 kb on + strand, within MPMX20_02392 at 2525.483 kb on + strand, within MPMX20_02392
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Pseudomonas silesiensis TBS_010 remove 2,523,132 + -2.1 2,523,188 + MPMX20_02390 0.11 +0.2 2,523,208 + MPMX20_02390 0.13 +0.0 2,523,208 + MPMX20_02390 0.13 -2.9 2,523,260 + MPMX20_02390 0.19 -0.1 2,523,286 - MPMX20_02390 0.22 -0.7 2,523,286 - MPMX20_02390 0.22 +0.6 2,523,300 - MPMX20_02390 0.24 -1.5 2,523,335 - MPMX20_02390 0.28 +0.5 2,523,370 + MPMX20_02390 0.32 -0.6 2,523,397 + MPMX20_02390 0.36 +0.1 2,523,445 - MPMX20_02390 0.41 +0.5 2,523,591 - MPMX20_02390 0.59 -0.4 2,523,641 + MPMX20_02390 0.64 +1.3 2,523,651 + MPMX20_02390 0.66 -0.3 2,523,651 + MPMX20_02390 0.66 -1.1 2,523,651 + MPMX20_02390 0.66 -1.4 2,523,659 - MPMX20_02390 0.67 -0.6 2,523,659 - MPMX20_02390 0.67 -0.7 2,523,659 - MPMX20_02390 0.67 -1.3 2,523,659 - MPMX20_02390 0.67 -1.5 2,523,659 - MPMX20_02390 0.67 +3.2 2,523,666 + MPMX20_02390 0.67 +2.4 2,523,674 - MPMX20_02390 0.68 +1.2 2,523,674 - MPMX20_02390 0.68 -1.1 2,523,722 - MPMX20_02390 0.74 +1.5 2,523,955 + -1.4 2,524,032 - -0.2 2,524,079 + -0.7 2,524,087 - +0.2 2,524,148 - MPMX20_02391 0.11 +1.5 2,524,148 - MPMX20_02391 0.11 +0.5 2,524,148 - MPMX20_02391 0.11 -0.2 2,524,148 - MPMX20_02391 0.11 +1.2 2,524,189 + MPMX20_02391 0.18 -0.9 2,524,197 - MPMX20_02391 0.19 +0.8 2,524,224 - MPMX20_02391 0.24 -1.1 2,524,239 + MPMX20_02391 0.27 +1.7 2,524,275 + MPMX20_02391 0.33 +0.1 2,524,279 + MPMX20_02391 0.34 +6.0 2,524,403 + MPMX20_02391 0.55 -0.5 2,524,578 + MPMX20_02391 0.86 -0.3 2,524,586 - MPMX20_02391 0.87 +2.8 2,524,591 - MPMX20_02391 0.88 -2.0 2,524,593 - MPMX20_02391 0.88 +0.3 2,524,597 + MPMX20_02391 0.89 +0.1 2,524,737 + -1.7 2,524,775 + +0.3 2,524,800 + -1.9 2,524,881 + +0.4 2,524,920 + MPMX20_02392 0.10 +0.2 2,524,920 + MPMX20_02392 0.10 +1.1 2,524,965 + MPMX20_02392 0.12 -0.9 2,524,983 - MPMX20_02392 0.13 -1.4 2,525,011 + MPMX20_02392 0.15 -2.2 2,525,073 + MPMX20_02392 0.18 -0.7 2,525,081 + MPMX20_02392 0.18 -0.5 2,525,081 + MPMX20_02392 0.18 -0.0 2,525,089 - MPMX20_02392 0.18 +1.9 2,525,132 + MPMX20_02392 0.20 +0.6 2,525,140 - MPMX20_02392 0.21 +1.4 2,525,140 - MPMX20_02392 0.21 -0.1 2,525,167 + MPMX20_02392 0.22 -1.6 2,525,167 + MPMX20_02392 0.22 +0.3 2,525,182 + MPMX20_02392 0.23 -1.0 2,525,182 + MPMX20_02392 0.23 +0.4 2,525,190 - MPMX20_02392 0.23 -0.3 2,525,239 + MPMX20_02392 0.26 +1.2 2,525,239 + MPMX20_02392 0.26 -0.5 2,525,257 - MPMX20_02392 0.26 -0.1 2,525,262 - MPMX20_02392 0.27 +1.3 2,525,262 - MPMX20_02392 0.27 +1.2 2,525,264 + MPMX20_02392 0.27 +0.4 2,525,264 + MPMX20_02392 0.27 +0.2 2,525,272 - MPMX20_02392 0.27 -0.6 2,525,277 - MPMX20_02392 0.27 -0.3 2,525,304 + MPMX20_02392 0.29 -1.3 2,525,329 + MPMX20_02392 0.30 -1.8 2,525,339 - MPMX20_02392 0.30 -1.7 2,525,368 + MPMX20_02392 0.32 -1.3 2,525,461 - MPMX20_02392 0.36 -0.1 2,525,475 + MPMX20_02392 0.37 +1.4 2,525,483 + MPMX20_02392 0.37 -0.3
Or see this region's nucleotide sequence