Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02287

Experiment: 0.1X LB plate, 1:1 coculture with Pseudomonas silesiensis TBS_010

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_02285 and MPMX20_02286 are separated by 86 nucleotidesMPMX20_02286 and MPMX20_02287 are separated by 60 nucleotidesMPMX20_02287 and MPMX20_02288 are separated by 474 nucleotidesMPMX20_02288 and MPMX20_02289 are separated by 284 nucleotides MPMX20_02285: MPMX20_02285 - GDP-mannose pyrophosphatase NudK, at 2,396,238 to 2,396,822 _02285 MPMX20_02286: MPMX20_02286 - Glycerol-3-phosphate regulon repressor, at 2,396,909 to 2,397,682 _02286 MPMX20_02287: MPMX20_02287 - hypothetical protein, at 2,397,743 to 2,398,105 _02287 MPMX20_02288: MPMX20_02288 - hypothetical protein, at 2,398,580 to 2,398,807 _02288 MPMX20_02289: MPMX20_02289 - hypothetical protein, at 2,399,092 to 2,400,483 _02289 Position (kb) 2397 2398 2399Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2396.777 kb on + strandat 2396.777 kb on + strandat 2396.777 kb on + strandat 2396.785 kb on - strandat 2396.804 kb on - strandat 2396.911 kb on + strandat 2396.947 kb on + strandat 2396.955 kb on - strandat 2396.960 kb on + strandat 2396.960 kb on + strandat 2396.968 kb on - strandat 2396.973 kb on - strandat 2397.151 kb on + strand, within MPMX20_02286at 2397.213 kb on + strand, within MPMX20_02286at 2397.213 kb on + strand, within MPMX20_02286at 2397.221 kb on - strand, within MPMX20_02286at 2397.221 kb on - strand, within MPMX20_02286at 2397.221 kb on - strand, within MPMX20_02286at 2397.221 kb on - strand, within MPMX20_02286at 2397.223 kb on + strand, within MPMX20_02286at 2397.270 kb on + strand, within MPMX20_02286at 2397.270 kb on + strand, within MPMX20_02286at 2397.270 kb on + strand, within MPMX20_02286at 2397.272 kb on - strand, within MPMX20_02286at 2397.278 kb on - strand, within MPMX20_02286at 2397.278 kb on - strand, within MPMX20_02286at 2397.306 kb on + strand, within MPMX20_02286at 2397.312 kb on + strand, within MPMX20_02286at 2397.314 kb on - strand, within MPMX20_02286at 2397.409 kb on - strand, within MPMX20_02286at 2397.443 kb on + strand, within MPMX20_02286at 2397.660 kb on + strandat 2397.668 kb on - strandat 2397.684 kb on - strandat 2397.703 kb on - strandat 2397.717 kb on - strandat 2397.721 kb on + strandat 2397.853 kb on - strand, within MPMX20_02287at 2397.893 kb on - strand, within MPMX20_02287at 2397.944 kb on - strand, within MPMX20_02287at 2397.987 kb on + strand, within MPMX20_02287at 2398.240 kb on + strandat 2398.240 kb on + strandat 2398.248 kb on - strandat 2398.248 kb on - strandat 2398.248 kb on - strandat 2398.276 kb on + strandat 2398.279 kb on - strandat 2398.323 kb on - strandat 2398.377 kb on - strandat 2398.450 kb on + strandat 2398.545 kb on + strandat 2398.545 kb on + strandat 2398.576 kb on - strandat 2398.593 kb on - strandat 2398.595 kb on - strandat 2398.821 kb on + strandat 2398.821 kb on + strandat 2398.821 kb on + strandat 2398.821 kb on + strandat 2398.821 kb on + strandat 2398.829 kb on - strandat 2398.829 kb on - strandat 2398.829 kb on - strandat 2398.829 kb on - strandat 2398.830 kb on - strandat 2398.839 kb on - strandat 2398.841 kb on + strandat 2398.841 kb on + strandat 2398.841 kb on + strandat 2398.841 kb on + strandat 2398.849 kb on - strandat 2398.886 kb on - strandat 2398.966 kb on + strandat 2398.966 kb on + strandat 2398.994 kb on + strandat 2398.994 kb on + strandat 2398.994 kb on + strandat 2398.994 kb on + strandat 2399.002 kb on - strandat 2399.017 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Pseudomonas silesiensis TBS_010
remove
2,396,777 + -0.3
2,396,777 + -0.4
2,396,777 + -0.4
2,396,785 - -0.8
2,396,804 - -1.2
2,396,911 + +1.0
2,396,947 + +0.9
2,396,955 - -2.1
2,396,960 + +2.2
2,396,960 + -1.4
2,396,968 - -1.7
2,396,973 - +1.2
2,397,151 + MPMX20_02286 0.31 +1.5
2,397,213 + MPMX20_02286 0.39 +0.2
2,397,213 + MPMX20_02286 0.39 +0.6
2,397,221 - MPMX20_02286 0.40 -1.1
2,397,221 - MPMX20_02286 0.40 -1.7
2,397,221 - MPMX20_02286 0.40 +0.0
2,397,221 - MPMX20_02286 0.40 -0.7
2,397,223 + MPMX20_02286 0.41 -0.9
2,397,270 + MPMX20_02286 0.47 +0.1
2,397,270 + MPMX20_02286 0.47 +1.7
2,397,270 + MPMX20_02286 0.47 -0.6
2,397,272 - MPMX20_02286 0.47 -0.8
2,397,278 - MPMX20_02286 0.48 -1.7
2,397,278 - MPMX20_02286 0.48 +0.6
2,397,306 + MPMX20_02286 0.51 -0.1
2,397,312 + MPMX20_02286 0.52 -0.3
2,397,314 - MPMX20_02286 0.52 -0.6
2,397,409 - MPMX20_02286 0.65 -1.0
2,397,443 + MPMX20_02286 0.69 +0.2
2,397,660 + -0.3
2,397,668 - -0.3
2,397,684 - +1.8
2,397,703 - +0.0
2,397,717 - +0.2
2,397,721 + +2.5
2,397,853 - MPMX20_02287 0.30 -1.3
2,397,893 - MPMX20_02287 0.41 -1.4
2,397,944 - MPMX20_02287 0.55 -1.0
2,397,987 + MPMX20_02287 0.67 -0.7
2,398,240 + -0.2
2,398,240 + -0.7
2,398,248 - +1.5
2,398,248 - -0.7
2,398,248 - -1.0
2,398,276 + -0.5
2,398,279 - -0.6
2,398,323 - -0.5
2,398,377 - -2.1
2,398,450 + +0.2
2,398,545 + -1.0
2,398,545 + +3.7
2,398,576 - -0.7
2,398,593 - +0.2
2,398,595 - -0.0
2,398,821 + +0.6
2,398,821 + -1.1
2,398,821 + -0.5
2,398,821 + -1.0
2,398,821 + -1.3
2,398,829 - -1.7
2,398,829 - +1.2
2,398,829 - -1.0
2,398,829 - +0.3
2,398,830 - +1.7
2,398,839 - -0.8
2,398,841 + -2.5
2,398,841 + -0.2
2,398,841 + -0.7
2,398,841 + +0.3
2,398,849 - -1.8
2,398,886 - -0.2
2,398,966 + -2.5
2,398,966 + -2.5
2,398,994 + +1.6
2,398,994 + +0.3
2,398,994 + -0.0
2,398,994 + +3.2
2,399,002 - -0.2
2,399,017 + -1.3

Or see this region's nucleotide sequence