Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02131

Experiment: 0.1X LB plate, 1:1 coculture with Pseudomonas silesiensis TBS_010

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02129 and MPMX20_02130 are separated by 51 nucleotidesMPMX20_02130 and MPMX20_02131 are separated by 219 nucleotidesMPMX20_02131 and MPMX20_02132 are separated by 38 nucleotides MPMX20_02129: MPMX20_02129 - Soluble epoxide hydrolase, at 2,217,731 to 2,218,636 _02129 MPMX20_02130: MPMX20_02130 - HTH-type transcriptional repressor ComR, at 2,218,688 to 2,219,296 _02130 MPMX20_02131: MPMX20_02131 - putative MFS-type transporter, at 2,219,516 to 2,220,712 _02131 MPMX20_02132: MPMX20_02132 - D-lactate dehydrogenase, at 2,220,751 to 2,221,740 _02132 Position (kb) 2219 2220 2221Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 2218.520 kb on - strand, within MPMX20_02129at 2218.520 kb on - strand, within MPMX20_02129at 2218.526 kb on + strand, within MPMX20_02129at 2218.530 kb on - strand, within MPMX20_02129at 2218.563 kb on + strandat 2218.571 kb on - strandat 2218.597 kb on - strandat 2218.599 kb on + strandat 2218.634 kb on + strandat 2218.718 kb on - strandat 2218.746 kb on + strandat 2218.766 kb on + strand, within MPMX20_02130at 2218.774 kb on - strand, within MPMX20_02130at 2218.774 kb on - strand, within MPMX20_02130at 2218.775 kb on - strand, within MPMX20_02130at 2218.789 kb on - strand, within MPMX20_02130at 2218.791 kb on - strand, within MPMX20_02130at 2218.837 kb on + strand, within MPMX20_02130at 2218.863 kb on - strand, within MPMX20_02130at 2218.884 kb on + strand, within MPMX20_02130at 2218.894 kb on + strand, within MPMX20_02130at 2218.930 kb on + strand, within MPMX20_02130at 2218.930 kb on + strand, within MPMX20_02130at 2218.930 kb on + strand, within MPMX20_02130at 2218.930 kb on + strand, within MPMX20_02130at 2218.936 kb on - strand, within MPMX20_02130at 2218.938 kb on - strand, within MPMX20_02130at 2218.938 kb on - strand, within MPMX20_02130at 2218.938 kb on - strand, within MPMX20_02130at 2218.938 kb on - strand, within MPMX20_02130at 2218.948 kb on + strand, within MPMX20_02130at 2219.016 kb on + strand, within MPMX20_02130at 2219.027 kb on + strand, within MPMX20_02130at 2219.027 kb on + strand, within MPMX20_02130at 2219.027 kb on + strand, within MPMX20_02130at 2219.035 kb on - strand, within MPMX20_02130at 2219.042 kb on + strand, within MPMX20_02130at 2219.078 kb on + strand, within MPMX20_02130at 2219.078 kb on + strand, within MPMX20_02130at 2219.085 kb on + strand, within MPMX20_02130at 2219.086 kb on - strand, within MPMX20_02130at 2219.128 kb on - strand, within MPMX20_02130at 2219.145 kb on + strand, within MPMX20_02130at 2219.155 kb on + strand, within MPMX20_02130at 2219.158 kb on - strand, within MPMX20_02130at 2219.158 kb on - strand, within MPMX20_02130at 2219.165 kb on + strand, within MPMX20_02130at 2219.178 kb on - strand, within MPMX20_02130at 2219.189 kb on + strand, within MPMX20_02130at 2219.191 kb on + strand, within MPMX20_02130at 2219.197 kb on - strand, within MPMX20_02130at 2219.228 kb on - strand, within MPMX20_02130at 2219.233 kb on - strand, within MPMX20_02130at 2219.242 kb on + strandat 2219.350 kb on + strandat 2219.427 kb on + strandat 2219.429 kb on + strandat 2219.437 kb on - strandat 2219.437 kb on - strandat 2219.439 kb on - strandat 2219.506 kb on + strandat 2219.506 kb on + strandat 2219.512 kb on + strandat 2219.514 kb on - strandat 2219.514 kb on - strandat 2219.546 kb on - strandat 2219.570 kb on - strandat 2219.716 kb on + strand, within MPMX20_02131at 2219.738 kb on - strand, within MPMX20_02131at 2219.740 kb on + strand, within MPMX20_02131at 2219.740 kb on + strand, within MPMX20_02131at 2219.748 kb on - strand, within MPMX20_02131at 2219.748 kb on - strand, within MPMX20_02131at 2219.748 kb on - strand, within MPMX20_02131at 2219.751 kb on + strand, within MPMX20_02131at 2219.751 kb on + strand, within MPMX20_02131at 2219.751 kb on + strand, within MPMX20_02131at 2219.761 kb on + strand, within MPMX20_02131at 2219.781 kb on - strand, within MPMX20_02131at 2219.872 kb on - strand, within MPMX20_02131at 2219.985 kb on - strand, within MPMX20_02131at 2220.020 kb on - strand, within MPMX20_02131at 2220.099 kb on - strand, within MPMX20_02131at 2220.151 kb on + strand, within MPMX20_02131at 2220.151 kb on + strand, within MPMX20_02131at 2220.151 kb on + strand, within MPMX20_02131at 2220.159 kb on - strand, within MPMX20_02131at 2220.159 kb on - strand, within MPMX20_02131at 2220.195 kb on - strand, within MPMX20_02131at 2220.335 kb on - strand, within MPMX20_02131at 2220.467 kb on - strand, within MPMX20_02131at 2220.474 kb on - strand, within MPMX20_02131at 2220.520 kb on + strand, within MPMX20_02131at 2220.528 kb on - strand, within MPMX20_02131at 2220.535 kb on - strand, within MPMX20_02131at 2220.540 kb on + strand, within MPMX20_02131at 2220.630 kb on - strandat 2220.632 kb on - strandat 2220.642 kb on + strandat 2220.650 kb on - strandat 2220.688 kb on - strandat 2220.705 kb on + strandat 2220.724 kb on + strandat 2220.724 kb on + strandat 2220.724 kb on + strandat 2220.732 kb on - strandat 2220.732 kb on - strandat 2220.732 kb on - strandat 2220.732 kb on - strandat 2220.732 kb on - strandat 2220.737 kb on - strandat 2220.756 kb on - strandat 2220.769 kb on - strandat 2220.780 kb on - strandat 2220.826 kb on + strandat 2220.850 kb on + strand, within MPMX20_02132at 2220.974 kb on - strand, within MPMX20_02132at 2221.077 kb on + strand, within MPMX20_02132at 2221.213 kb on - strand, within MPMX20_02132at 2221.277 kb on + strand, within MPMX20_02132at 2221.279 kb on - strand, within MPMX20_02132at 2221.312 kb on - strand, within MPMX20_02132at 2221.325 kb on - strand, within MPMX20_02132at 2221.325 kb on - strand, within MPMX20_02132at 2221.469 kb on - strand, within MPMX20_02132at 2221.476 kb on - strand, within MPMX20_02132at 2221.501 kb on + strand, within MPMX20_02132at 2221.501 kb on + strand, within MPMX20_02132at 2221.501 kb on + strand, within MPMX20_02132at 2221.509 kb on - strand, within MPMX20_02132at 2221.509 kb on - strand, within MPMX20_02132at 2221.514 kb on - strand, within MPMX20_02132at 2221.524 kb on - strand, within MPMX20_02132at 2221.524 kb on - strand, within MPMX20_02132at 2221.649 kb on - strandat 2221.662 kb on + strandat 2221.670 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Pseudomonas silesiensis TBS_010
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2,218,520 - MPMX20_02129 0.87 +3.3
2,218,520 - MPMX20_02129 0.87 -0.4
2,218,526 + MPMX20_02129 0.88 +0.8
2,218,530 - MPMX20_02129 0.88 -1.7
2,218,563 + +0.0
2,218,571 - +1.0
2,218,597 - -0.8
2,218,599 + +1.0
2,218,634 + +0.5
2,218,718 - -1.0
2,218,746 + +0.5
2,218,766 + MPMX20_02130 0.13 +3.7
2,218,774 - MPMX20_02130 0.14 +3.5
2,218,774 - MPMX20_02130 0.14 -0.6
2,218,775 - MPMX20_02130 0.14 +2.1
2,218,789 - MPMX20_02130 0.17 -1.6
2,218,791 - MPMX20_02130 0.17 +1.5
2,218,837 + MPMX20_02130 0.24 -0.5
2,218,863 - MPMX20_02130 0.29 +1.0
2,218,884 + MPMX20_02130 0.32 -0.1
2,218,894 + MPMX20_02130 0.34 +0.8
2,218,930 + MPMX20_02130 0.40 -0.1
2,218,930 + MPMX20_02130 0.40 -0.6
2,218,930 + MPMX20_02130 0.40 -0.6
2,218,930 + MPMX20_02130 0.40 -1.0
2,218,936 - MPMX20_02130 0.41 +0.2
2,218,938 - MPMX20_02130 0.41 -1.2
2,218,938 - MPMX20_02130 0.41 +1.1
2,218,938 - MPMX20_02130 0.41 +0.6
2,218,938 - MPMX20_02130 0.41 +0.1
2,218,948 + MPMX20_02130 0.43 -0.6
2,219,016 + MPMX20_02130 0.54 -1.0
2,219,027 + MPMX20_02130 0.56 -0.4
2,219,027 + MPMX20_02130 0.56 -0.7
2,219,027 + MPMX20_02130 0.56 +0.7
2,219,035 - MPMX20_02130 0.57 -1.4
2,219,042 + MPMX20_02130 0.58 +0.5
2,219,078 + MPMX20_02130 0.64 -1.0
2,219,078 + MPMX20_02130 0.64 -1.0
2,219,085 + MPMX20_02130 0.65 -0.4
2,219,086 - MPMX20_02130 0.65 +3.9
2,219,128 - MPMX20_02130 0.72 -2.4
2,219,145 + MPMX20_02130 0.75 +1.2
2,219,155 + MPMX20_02130 0.77 -0.2
2,219,158 - MPMX20_02130 0.77 +0.1
2,219,158 - MPMX20_02130 0.77 +4.3
2,219,165 + MPMX20_02130 0.78 +1.3
2,219,178 - MPMX20_02130 0.80 +0.5
2,219,189 + MPMX20_02130 0.82 -0.4
2,219,191 + MPMX20_02130 0.83 -0.0
2,219,197 - MPMX20_02130 0.84 -1.3
2,219,228 - MPMX20_02130 0.89 -0.2
2,219,233 - MPMX20_02130 0.89 -0.9
2,219,242 + -0.9
2,219,350 + +1.7
2,219,427 + -0.1
2,219,429 + +0.1
2,219,437 - -1.1
2,219,437 - +1.1
2,219,439 - -1.2
2,219,506 + -1.9
2,219,506 + +2.3
2,219,512 + -0.8
2,219,514 - +0.2
2,219,514 - -1.0
2,219,546 - +2.5
2,219,570 - +0.7
2,219,716 + MPMX20_02131 0.17 -0.1
2,219,738 - MPMX20_02131 0.19 -0.7
2,219,740 + MPMX20_02131 0.19 -0.3
2,219,740 + MPMX20_02131 0.19 -1.4
2,219,748 - MPMX20_02131 0.19 -0.8
2,219,748 - MPMX20_02131 0.19 -0.4
2,219,748 - MPMX20_02131 0.19 -0.1
2,219,751 + MPMX20_02131 0.20 -2.3
2,219,751 + MPMX20_02131 0.20 -1.7
2,219,751 + MPMX20_02131 0.20 +4.0
2,219,761 + MPMX20_02131 0.20 -0.9
2,219,781 - MPMX20_02131 0.22 -0.7
2,219,872 - MPMX20_02131 0.30 -0.8
2,219,985 - MPMX20_02131 0.39 -1.4
2,220,020 - MPMX20_02131 0.42 +0.9
2,220,099 - MPMX20_02131 0.49 -0.3
2,220,151 + MPMX20_02131 0.53 -0.1
2,220,151 + MPMX20_02131 0.53 -0.8
2,220,151 + MPMX20_02131 0.53 +4.5
2,220,159 - MPMX20_02131 0.54 +0.6
2,220,159 - MPMX20_02131 0.54 -0.5
2,220,195 - MPMX20_02131 0.57 +0.2
2,220,335 - MPMX20_02131 0.68 -1.2
2,220,467 - MPMX20_02131 0.79 -0.4
2,220,474 - MPMX20_02131 0.80 +0.0
2,220,520 + MPMX20_02131 0.84 -2.8
2,220,528 - MPMX20_02131 0.85 +0.9
2,220,535 - MPMX20_02131 0.85 +0.1
2,220,540 + MPMX20_02131 0.86 +3.4
2,220,630 - +0.0
2,220,632 - -1.3
2,220,642 + -0.2
2,220,650 - +3.1
2,220,688 - +0.8
2,220,705 + +0.1
2,220,724 + -0.6
2,220,724 + -2.5
2,220,724 + -0.8
2,220,732 - +2.8
2,220,732 - -2.6
2,220,732 - +0.0
2,220,732 - +0.3
2,220,732 - +0.4
2,220,737 - -0.1
2,220,756 - -1.1
2,220,769 - +0.3
2,220,780 - -1.7
2,220,826 + -1.8
2,220,850 + MPMX20_02132 0.10 -0.7
2,220,974 - MPMX20_02132 0.23 -0.9
2,221,077 + MPMX20_02132 0.33 +6.3
2,221,213 - MPMX20_02132 0.47 -0.2
2,221,277 + MPMX20_02132 0.53 -0.0
2,221,279 - MPMX20_02132 0.53 +1.0
2,221,312 - MPMX20_02132 0.57 +0.4
2,221,325 - MPMX20_02132 0.58 -0.9
2,221,325 - MPMX20_02132 0.58 -1.5
2,221,469 - MPMX20_02132 0.73 -1.3
2,221,476 - MPMX20_02132 0.73 -0.5
2,221,501 + MPMX20_02132 0.76 +0.2
2,221,501 + MPMX20_02132 0.76 +0.5
2,221,501 + MPMX20_02132 0.76 +1.5
2,221,509 - MPMX20_02132 0.77 -0.3
2,221,509 - MPMX20_02132 0.77 +2.4
2,221,514 - MPMX20_02132 0.77 -1.0
2,221,524 - MPMX20_02132 0.78 +0.5
2,221,524 - MPMX20_02132 0.78 +2.1
2,221,649 - +0.4
2,221,662 + -1.7
2,221,670 - -1.5

Or see this region's nucleotide sequence