Experiment: 0.1X LB plate, 1:1 coculture with Pseudomonas silesiensis TBS_010
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02129 and MPMX20_02130 are separated by 51 nucleotides MPMX20_02130 and MPMX20_02131 are separated by 219 nucleotides MPMX20_02131 and MPMX20_02132 are separated by 38 nucleotides
MPMX20_02129: MPMX20_02129 - Soluble epoxide hydrolase, at 2,217,731 to 2,218,636
_02129
MPMX20_02130: MPMX20_02130 - HTH-type transcriptional repressor ComR, at 2,218,688 to 2,219,296
_02130
MPMX20_02131: MPMX20_02131 - putative MFS-type transporter, at 2,219,516 to 2,220,712
_02131
MPMX20_02132: MPMX20_02132 - D-lactate dehydrogenase, at 2,220,751 to 2,221,740
_02132
Position (kb)
2219
2220
2221 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6 at 2218.520 kb on - strand, within MPMX20_02129 at 2218.520 kb on - strand, within MPMX20_02129 at 2218.526 kb on + strand, within MPMX20_02129 at 2218.530 kb on - strand, within MPMX20_02129 at 2218.563 kb on + strand at 2218.571 kb on - strand at 2218.597 kb on - strand at 2218.599 kb on + strand at 2218.634 kb on + strand at 2218.718 kb on - strand at 2218.746 kb on + strand at 2218.766 kb on + strand, within MPMX20_02130 at 2218.774 kb on - strand, within MPMX20_02130 at 2218.774 kb on - strand, within MPMX20_02130 at 2218.775 kb on - strand, within MPMX20_02130 at 2218.789 kb on - strand, within MPMX20_02130 at 2218.791 kb on - strand, within MPMX20_02130 at 2218.837 kb on + strand, within MPMX20_02130 at 2218.863 kb on - strand, within MPMX20_02130 at 2218.884 kb on + strand, within MPMX20_02130 at 2218.894 kb on + strand, within MPMX20_02130 at 2218.930 kb on + strand, within MPMX20_02130 at 2218.930 kb on + strand, within MPMX20_02130 at 2218.930 kb on + strand, within MPMX20_02130 at 2218.930 kb on + strand, within MPMX20_02130 at 2218.936 kb on - strand, within MPMX20_02130 at 2218.938 kb on - strand, within MPMX20_02130 at 2218.938 kb on - strand, within MPMX20_02130 at 2218.938 kb on - strand, within MPMX20_02130 at 2218.938 kb on - strand, within MPMX20_02130 at 2218.948 kb on + strand, within MPMX20_02130 at 2219.016 kb on + strand, within MPMX20_02130 at 2219.027 kb on + strand, within MPMX20_02130 at 2219.027 kb on + strand, within MPMX20_02130 at 2219.027 kb on + strand, within MPMX20_02130 at 2219.035 kb on - strand, within MPMX20_02130 at 2219.042 kb on + strand, within MPMX20_02130 at 2219.078 kb on + strand, within MPMX20_02130 at 2219.078 kb on + strand, within MPMX20_02130 at 2219.085 kb on + strand, within MPMX20_02130 at 2219.086 kb on - strand, within MPMX20_02130 at 2219.128 kb on - strand, within MPMX20_02130 at 2219.145 kb on + strand, within MPMX20_02130 at 2219.155 kb on + strand, within MPMX20_02130 at 2219.158 kb on - strand, within MPMX20_02130 at 2219.158 kb on - strand, within MPMX20_02130 at 2219.165 kb on + strand, within MPMX20_02130 at 2219.178 kb on - strand, within MPMX20_02130 at 2219.189 kb on + strand, within MPMX20_02130 at 2219.191 kb on + strand, within MPMX20_02130 at 2219.197 kb on - strand, within MPMX20_02130 at 2219.228 kb on - strand, within MPMX20_02130 at 2219.233 kb on - strand, within MPMX20_02130 at 2219.242 kb on + strand at 2219.350 kb on + strand at 2219.427 kb on + strand at 2219.429 kb on + strand at 2219.437 kb on - strand at 2219.437 kb on - strand at 2219.439 kb on - strand at 2219.506 kb on + strand at 2219.506 kb on + strand at 2219.512 kb on + strand at 2219.514 kb on - strand at 2219.514 kb on - strand at 2219.546 kb on - strand at 2219.570 kb on - strand at 2219.716 kb on + strand, within MPMX20_02131 at 2219.738 kb on - strand, within MPMX20_02131 at 2219.740 kb on + strand, within MPMX20_02131 at 2219.740 kb on + strand, within MPMX20_02131 at 2219.748 kb on - strand, within MPMX20_02131 at 2219.748 kb on - strand, within MPMX20_02131 at 2219.748 kb on - strand, within MPMX20_02131 at 2219.751 kb on + strand, within MPMX20_02131 at 2219.751 kb on + strand, within MPMX20_02131 at 2219.751 kb on + strand, within MPMX20_02131 at 2219.761 kb on + strand, within MPMX20_02131 at 2219.781 kb on - strand, within MPMX20_02131 at 2219.872 kb on - strand, within MPMX20_02131 at 2219.985 kb on - strand, within MPMX20_02131 at 2220.020 kb on - strand, within MPMX20_02131 at 2220.099 kb on - strand, within MPMX20_02131 at 2220.151 kb on + strand, within MPMX20_02131 at 2220.151 kb on + strand, within MPMX20_02131 at 2220.151 kb on + strand, within MPMX20_02131 at 2220.159 kb on - strand, within MPMX20_02131 at 2220.159 kb on - strand, within MPMX20_02131 at 2220.195 kb on - strand, within MPMX20_02131 at 2220.335 kb on - strand, within MPMX20_02131 at 2220.467 kb on - strand, within MPMX20_02131 at 2220.474 kb on - strand, within MPMX20_02131 at 2220.520 kb on + strand, within MPMX20_02131 at 2220.528 kb on - strand, within MPMX20_02131 at 2220.535 kb on - strand, within MPMX20_02131 at 2220.540 kb on + strand, within MPMX20_02131 at 2220.630 kb on - strand at 2220.632 kb on - strand at 2220.642 kb on + strand at 2220.650 kb on - strand at 2220.688 kb on - strand at 2220.705 kb on + strand at 2220.724 kb on + strand at 2220.724 kb on + strand at 2220.724 kb on + strand at 2220.732 kb on - strand at 2220.732 kb on - strand at 2220.732 kb on - strand at 2220.732 kb on - strand at 2220.732 kb on - strand at 2220.737 kb on - strand at 2220.756 kb on - strand at 2220.769 kb on - strand at 2220.780 kb on - strand at 2220.826 kb on + strand at 2220.850 kb on + strand, within MPMX20_02132 at 2220.974 kb on - strand, within MPMX20_02132 at 2221.077 kb on + strand, within MPMX20_02132 at 2221.213 kb on - strand, within MPMX20_02132 at 2221.277 kb on + strand, within MPMX20_02132 at 2221.279 kb on - strand, within MPMX20_02132 at 2221.312 kb on - strand, within MPMX20_02132 at 2221.325 kb on - strand, within MPMX20_02132 at 2221.325 kb on - strand, within MPMX20_02132 at 2221.469 kb on - strand, within MPMX20_02132 at 2221.476 kb on - strand, within MPMX20_02132 at 2221.501 kb on + strand, within MPMX20_02132 at 2221.501 kb on + strand, within MPMX20_02132 at 2221.501 kb on + strand, within MPMX20_02132 at 2221.509 kb on - strand, within MPMX20_02132 at 2221.509 kb on - strand, within MPMX20_02132 at 2221.514 kb on - strand, within MPMX20_02132 at 2221.524 kb on - strand, within MPMX20_02132 at 2221.524 kb on - strand, within MPMX20_02132 at 2221.649 kb on - strand at 2221.662 kb on + strand at 2221.670 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Pseudomonas silesiensis TBS_010 remove 2,218,520 - MPMX20_02129 0.87 +3.3 2,218,520 - MPMX20_02129 0.87 -0.4 2,218,526 + MPMX20_02129 0.88 +0.8 2,218,530 - MPMX20_02129 0.88 -1.7 2,218,563 + +0.0 2,218,571 - +1.0 2,218,597 - -0.8 2,218,599 + +1.0 2,218,634 + +0.5 2,218,718 - -1.0 2,218,746 + +0.5 2,218,766 + MPMX20_02130 0.13 +3.7 2,218,774 - MPMX20_02130 0.14 +3.5 2,218,774 - MPMX20_02130 0.14 -0.6 2,218,775 - MPMX20_02130 0.14 +2.1 2,218,789 - MPMX20_02130 0.17 -1.6 2,218,791 - MPMX20_02130 0.17 +1.5 2,218,837 + MPMX20_02130 0.24 -0.5 2,218,863 - MPMX20_02130 0.29 +1.0 2,218,884 + MPMX20_02130 0.32 -0.1 2,218,894 + MPMX20_02130 0.34 +0.8 2,218,930 + MPMX20_02130 0.40 -0.1 2,218,930 + MPMX20_02130 0.40 -0.6 2,218,930 + MPMX20_02130 0.40 -0.6 2,218,930 + MPMX20_02130 0.40 -1.0 2,218,936 - MPMX20_02130 0.41 +0.2 2,218,938 - MPMX20_02130 0.41 -1.2 2,218,938 - MPMX20_02130 0.41 +1.1 2,218,938 - MPMX20_02130 0.41 +0.6 2,218,938 - MPMX20_02130 0.41 +0.1 2,218,948 + MPMX20_02130 0.43 -0.6 2,219,016 + MPMX20_02130 0.54 -1.0 2,219,027 + MPMX20_02130 0.56 -0.4 2,219,027 + MPMX20_02130 0.56 -0.7 2,219,027 + MPMX20_02130 0.56 +0.7 2,219,035 - MPMX20_02130 0.57 -1.4 2,219,042 + MPMX20_02130 0.58 +0.5 2,219,078 + MPMX20_02130 0.64 -1.0 2,219,078 + MPMX20_02130 0.64 -1.0 2,219,085 + MPMX20_02130 0.65 -0.4 2,219,086 - MPMX20_02130 0.65 +3.9 2,219,128 - MPMX20_02130 0.72 -2.4 2,219,145 + MPMX20_02130 0.75 +1.2 2,219,155 + MPMX20_02130 0.77 -0.2 2,219,158 - MPMX20_02130 0.77 +0.1 2,219,158 - MPMX20_02130 0.77 +4.3 2,219,165 + MPMX20_02130 0.78 +1.3 2,219,178 - MPMX20_02130 0.80 +0.5 2,219,189 + MPMX20_02130 0.82 -0.4 2,219,191 + MPMX20_02130 0.83 -0.0 2,219,197 - MPMX20_02130 0.84 -1.3 2,219,228 - MPMX20_02130 0.89 -0.2 2,219,233 - MPMX20_02130 0.89 -0.9 2,219,242 + -0.9 2,219,350 + +1.7 2,219,427 + -0.1 2,219,429 + +0.1 2,219,437 - -1.1 2,219,437 - +1.1 2,219,439 - -1.2 2,219,506 + -1.9 2,219,506 + +2.3 2,219,512 + -0.8 2,219,514 - +0.2 2,219,514 - -1.0 2,219,546 - +2.5 2,219,570 - +0.7 2,219,716 + MPMX20_02131 0.17 -0.1 2,219,738 - MPMX20_02131 0.19 -0.7 2,219,740 + MPMX20_02131 0.19 -0.3 2,219,740 + MPMX20_02131 0.19 -1.4 2,219,748 - MPMX20_02131 0.19 -0.8 2,219,748 - MPMX20_02131 0.19 -0.4 2,219,748 - MPMX20_02131 0.19 -0.1 2,219,751 + MPMX20_02131 0.20 -2.3 2,219,751 + MPMX20_02131 0.20 -1.7 2,219,751 + MPMX20_02131 0.20 +4.0 2,219,761 + MPMX20_02131 0.20 -0.9 2,219,781 - MPMX20_02131 0.22 -0.7 2,219,872 - MPMX20_02131 0.30 -0.8 2,219,985 - MPMX20_02131 0.39 -1.4 2,220,020 - MPMX20_02131 0.42 +0.9 2,220,099 - MPMX20_02131 0.49 -0.3 2,220,151 + MPMX20_02131 0.53 -0.1 2,220,151 + MPMX20_02131 0.53 -0.8 2,220,151 + MPMX20_02131 0.53 +4.5 2,220,159 - MPMX20_02131 0.54 +0.6 2,220,159 - MPMX20_02131 0.54 -0.5 2,220,195 - MPMX20_02131 0.57 +0.2 2,220,335 - MPMX20_02131 0.68 -1.2 2,220,467 - MPMX20_02131 0.79 -0.4 2,220,474 - MPMX20_02131 0.80 +0.0 2,220,520 + MPMX20_02131 0.84 -2.8 2,220,528 - MPMX20_02131 0.85 +0.9 2,220,535 - MPMX20_02131 0.85 +0.1 2,220,540 + MPMX20_02131 0.86 +3.4 2,220,630 - +0.0 2,220,632 - -1.3 2,220,642 + -0.2 2,220,650 - +3.1 2,220,688 - +0.8 2,220,705 + +0.1 2,220,724 + -0.6 2,220,724 + -2.5 2,220,724 + -0.8 2,220,732 - +2.8 2,220,732 - -2.6 2,220,732 - +0.0 2,220,732 - +0.3 2,220,732 - +0.4 2,220,737 - -0.1 2,220,756 - -1.1 2,220,769 - +0.3 2,220,780 - -1.7 2,220,826 + -1.8 2,220,850 + MPMX20_02132 0.10 -0.7 2,220,974 - MPMX20_02132 0.23 -0.9 2,221,077 + MPMX20_02132 0.33 +6.3 2,221,213 - MPMX20_02132 0.47 -0.2 2,221,277 + MPMX20_02132 0.53 -0.0 2,221,279 - MPMX20_02132 0.53 +1.0 2,221,312 - MPMX20_02132 0.57 +0.4 2,221,325 - MPMX20_02132 0.58 -0.9 2,221,325 - MPMX20_02132 0.58 -1.5 2,221,469 - MPMX20_02132 0.73 -1.3 2,221,476 - MPMX20_02132 0.73 -0.5 2,221,501 + MPMX20_02132 0.76 +0.2 2,221,501 + MPMX20_02132 0.76 +0.5 2,221,501 + MPMX20_02132 0.76 +1.5 2,221,509 - MPMX20_02132 0.77 -0.3 2,221,509 - MPMX20_02132 0.77 +2.4 2,221,514 - MPMX20_02132 0.77 -1.0 2,221,524 - MPMX20_02132 0.78 +0.5 2,221,524 - MPMX20_02132 0.78 +2.1 2,221,649 - +0.4 2,221,662 + -1.7 2,221,670 - -1.5
Or see this region's nucleotide sequence