Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00621

Experiment: 0.1X LB plate, 1:1 coculture with Pseudomonas silesiensis TBS_010

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00620 and MPMX20_00621 overlap by 11 nucleotidesMPMX20_00621 and MPMX20_00622 overlap by 4 nucleotides MPMX20_00620: MPMX20_00620 - Inner membrane protein YibH, at 644,647 to 645,711 _00620 MPMX20_00621: MPMX20_00621 - hypothetical protein, at 645,701 to 646,777 _00621 MPMX20_00622: MPMX20_00622 - hypothetical protein, at 646,774 to 648,045 _00622 Position (kb) 645 646 647Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7at 644.750 kb on + strandat 644.758 kb on - strand, within MPMX20_00620at 644.774 kb on + strand, within MPMX20_00620at 644.808 kb on + strand, within MPMX20_00620at 644.841 kb on + strand, within MPMX20_00620at 644.843 kb on - strand, within MPMX20_00620at 644.871 kb on + strand, within MPMX20_00620at 644.879 kb on - strand, within MPMX20_00620at 644.895 kb on + strand, within MPMX20_00620at 644.903 kb on - strand, within MPMX20_00620at 644.976 kb on - strand, within MPMX20_00620at 644.976 kb on - strand, within MPMX20_00620at 644.976 kb on - strand, within MPMX20_00620at 644.997 kb on - strand, within MPMX20_00620at 645.039 kb on + strand, within MPMX20_00620at 645.039 kb on + strand, within MPMX20_00620at 645.047 kb on - strand, within MPMX20_00620at 645.091 kb on + strand, within MPMX20_00620at 645.137 kb on + strand, within MPMX20_00620at 645.137 kb on + strand, within MPMX20_00620at 645.145 kb on - strand, within MPMX20_00620at 645.145 kb on - strand, within MPMX20_00620at 645.145 kb on - strand, within MPMX20_00620at 645.190 kb on - strand, within MPMX20_00620at 645.237 kb on - strand, within MPMX20_00620at 645.246 kb on + strand, within MPMX20_00620at 645.285 kb on + strand, within MPMX20_00620at 645.298 kb on - strand, within MPMX20_00620at 645.417 kb on + strand, within MPMX20_00620at 645.530 kb on + strand, within MPMX20_00620at 645.571 kb on + strand, within MPMX20_00620at 645.579 kb on - strand, within MPMX20_00620at 645.579 kb on - strand, within MPMX20_00620at 645.622 kb on + strandat 645.628 kb on + strandat 645.683 kb on - strandat 645.696 kb on + strandat 645.696 kb on + strandat 645.732 kb on - strandat 645.739 kb on + strandat 645.841 kb on - strand, within MPMX20_00621at 645.856 kb on + strand, within MPMX20_00621at 645.857 kb on + strand, within MPMX20_00621at 645.857 kb on + strand, within MPMX20_00621at 645.950 kb on - strand, within MPMX20_00621at 646.073 kb on + strand, within MPMX20_00621at 646.078 kb on + strand, within MPMX20_00621at 646.089 kb on - strand, within MPMX20_00621at 646.091 kb on - strand, within MPMX20_00621at 646.104 kb on - strand, within MPMX20_00621at 646.128 kb on + strand, within MPMX20_00621at 646.161 kb on + strand, within MPMX20_00621at 646.287 kb on + strand, within MPMX20_00621at 646.425 kb on + strand, within MPMX20_00621at 646.430 kb on + strand, within MPMX20_00621at 646.430 kb on + strand, within MPMX20_00621at 646.430 kb on + strand, within MPMX20_00621at 646.430 kb on + strand, within MPMX20_00621at 646.430 kb on + strand, within MPMX20_00621at 646.430 kb on + strand, within MPMX20_00621at 646.430 kb on + strand, within MPMX20_00621at 646.433 kb on - strand, within MPMX20_00621at 646.438 kb on - strand, within MPMX20_00621at 646.438 kb on - strand, within MPMX20_00621at 646.438 kb on - strand, within MPMX20_00621at 646.462 kb on + strand, within MPMX20_00621at 646.469 kb on - strand, within MPMX20_00621at 646.485 kb on + strand, within MPMX20_00621at 646.488 kb on - strand, within MPMX20_00621at 646.493 kb on - strand, within MPMX20_00621at 646.515 kb on + strand, within MPMX20_00621at 646.523 kb on - strand, within MPMX20_00621at 646.632 kb on + strand, within MPMX20_00621at 646.674 kb on + strandat 646.682 kb on - strandat 646.682 kb on - strandat 646.796 kb on - strandat 646.839 kb on + strandat 646.839 kb on + strandat 646.847 kb on - strandat 646.847 kb on - strandat 646.866 kb on - strandat 646.872 kb on - strandat 646.895 kb on - strandat 646.916 kb on + strand, within MPMX20_00622at 646.924 kb on - strand, within MPMX20_00622at 646.929 kb on - strand, within MPMX20_00622at 646.934 kb on - strand, within MPMX20_00622at 646.981 kb on - strand, within MPMX20_00622at 647.048 kb on - strand, within MPMX20_00622at 647.082 kb on - strand, within MPMX20_00622at 647.135 kb on + strand, within MPMX20_00622at 647.143 kb on - strand, within MPMX20_00622at 647.143 kb on - strand, within MPMX20_00622at 647.384 kb on - strand, within MPMX20_00622at 647.454 kb on + strand, within MPMX20_00622at 647.462 kb on - strand, within MPMX20_00622at 647.488 kb on - strand, within MPMX20_00622at 647.491 kb on - strand, within MPMX20_00622at 647.504 kb on - strand, within MPMX20_00622at 647.563 kb on + strand, within MPMX20_00622at 647.650 kb on - strand, within MPMX20_00622at 647.693 kb on - strand, within MPMX20_00622at 647.712 kb on - strand, within MPMX20_00622

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Pseudomonas silesiensis TBS_010
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644,750 + -0.3
644,758 - MPMX20_00620 0.10 -1.1
644,774 + MPMX20_00620 0.12 +3.7
644,808 + MPMX20_00620 0.15 -0.7
644,841 + MPMX20_00620 0.18 -1.0
644,843 - MPMX20_00620 0.18 -0.3
644,871 + MPMX20_00620 0.21 -0.7
644,879 - MPMX20_00620 0.22 +3.0
644,895 + MPMX20_00620 0.23 -1.6
644,903 - MPMX20_00620 0.24 +0.5
644,976 - MPMX20_00620 0.31 -1.3
644,976 - MPMX20_00620 0.31 -0.3
644,976 - MPMX20_00620 0.31 -1.9
644,997 - MPMX20_00620 0.33 +1.0
645,039 + MPMX20_00620 0.37 +0.3
645,039 + MPMX20_00620 0.37 -1.4
645,047 - MPMX20_00620 0.38 -0.2
645,091 + MPMX20_00620 0.42 -1.1
645,137 + MPMX20_00620 0.46 +1.6
645,137 + MPMX20_00620 0.46 +2.0
645,145 - MPMX20_00620 0.47 -0.5
645,145 - MPMX20_00620 0.47 +0.1
645,145 - MPMX20_00620 0.47 -0.4
645,190 - MPMX20_00620 0.51 -0.3
645,237 - MPMX20_00620 0.55 +0.2
645,246 + MPMX20_00620 0.56 +3.9
645,285 + MPMX20_00620 0.60 +0.3
645,298 - MPMX20_00620 0.61 -0.4
645,417 + MPMX20_00620 0.72 +0.3
645,530 + MPMX20_00620 0.83 -1.5
645,571 + MPMX20_00620 0.87 -1.3
645,579 - MPMX20_00620 0.88 -3.1
645,579 - MPMX20_00620 0.88 -0.5
645,622 + -0.3
645,628 + -0.5
645,683 - +0.9
645,696 + +1.7
645,696 + +0.5
645,732 - +1.3
645,739 + +0.3
645,841 - MPMX20_00621 0.13 +1.8
645,856 + MPMX20_00621 0.14 -0.8
645,857 + MPMX20_00621 0.14 +0.2
645,857 + MPMX20_00621 0.14 -1.1
645,950 - MPMX20_00621 0.23 +0.3
646,073 + MPMX20_00621 0.35 +0.5
646,078 + MPMX20_00621 0.35 +0.0
646,089 - MPMX20_00621 0.36 +3.6
646,091 - MPMX20_00621 0.36 -1.3
646,104 - MPMX20_00621 0.37 +0.6
646,128 + MPMX20_00621 0.40 -0.1
646,161 + MPMX20_00621 0.43 -0.6
646,287 + MPMX20_00621 0.54 -1.5
646,425 + MPMX20_00621 0.67 +1.0
646,430 + MPMX20_00621 0.68 +1.5
646,430 + MPMX20_00621 0.68 +0.7
646,430 + MPMX20_00621 0.68 +0.2
646,430 + MPMX20_00621 0.68 -0.6
646,430 + MPMX20_00621 0.68 -0.1
646,430 + MPMX20_00621 0.68 -0.4
646,430 + MPMX20_00621 0.68 +7.1
646,433 - MPMX20_00621 0.68 +1.4
646,438 - MPMX20_00621 0.68 +4.6
646,438 - MPMX20_00621 0.68 +0.4
646,438 - MPMX20_00621 0.68 -1.2
646,462 + MPMX20_00621 0.71 +0.1
646,469 - MPMX20_00621 0.71 +0.6
646,485 + MPMX20_00621 0.73 -1.2
646,488 - MPMX20_00621 0.73 +3.0
646,493 - MPMX20_00621 0.74 +0.1
646,515 + MPMX20_00621 0.76 -0.9
646,523 - MPMX20_00621 0.76 -1.5
646,632 + MPMX20_00621 0.86 -0.7
646,674 + -2.2
646,682 - -0.4
646,682 - -0.3
646,796 - +0.7
646,839 + -0.0
646,839 + -0.8
646,847 - +0.2
646,847 - +0.0
646,866 - -2.0
646,872 - -0.6
646,895 - -0.5
646,916 + MPMX20_00622 0.11 -0.5
646,924 - MPMX20_00622 0.12 +1.0
646,929 - MPMX20_00622 0.12 -0.2
646,934 - MPMX20_00622 0.13 +0.4
646,981 - MPMX20_00622 0.16 +1.0
647,048 - MPMX20_00622 0.22 +0.6
647,082 - MPMX20_00622 0.24 +0.1
647,135 + MPMX20_00622 0.28 -0.6
647,143 - MPMX20_00622 0.29 -0.1
647,143 - MPMX20_00622 0.29 -0.6
647,384 - MPMX20_00622 0.48 +1.0
647,454 + MPMX20_00622 0.53 -0.9
647,462 - MPMX20_00622 0.54 +0.3
647,488 - MPMX20_00622 0.56 +1.0
647,491 - MPMX20_00622 0.56 +2.0
647,504 - MPMX20_00622 0.57 +4.5
647,563 + MPMX20_00622 0.62 +0.3
647,650 - MPMX20_00622 0.69 +0.4
647,693 - MPMX20_00622 0.72 +1.7
647,712 - MPMX20_00622 0.74 +1.4

Or see this region's nucleotide sequence