Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00391

Experiment: 0.1X LB plate, 1:1 coculture with Pseudomonas silesiensis TBS_010

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00388 and MPMX20_00389 are separated by 87 nucleotidesMPMX20_00389 and MPMX20_00390 are separated by 40 nucleotidesMPMX20_00390 and MPMX20_00391 overlap by 4 nucleotidesMPMX20_00391 and MPMX20_00392 overlap by 4 nucleotidesMPMX20_00392 and MPMX20_00393 are separated by 119 nucleotides MPMX20_00388: MPMX20_00388 - hypothetical protein, at 406,868 to 406,966 _00388 MPMX20_00389: MPMX20_00389 - hypothetical protein, at 407,054 to 407,440 _00389 MPMX20_00390: MPMX20_00390 - hypothetical protein, at 407,481 to 407,897 _00390 MPMX20_00391: MPMX20_00391 - hypothetical protein, at 407,894 to 408,397 _00391 MPMX20_00392: MPMX20_00392 - hypothetical protein, at 408,394 to 408,798 _00392 MPMX20_00393: MPMX20_00393 - hypothetical protein, at 408,918 to 409,469 _00393 Position (kb) 407 408 409Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 406.966 kb on + strandat 406.976 kb on + strandat 406.981 kb on + strandat 406.981 kb on + strandat 406.981 kb on + strandat 406.981 kb on + strandat 406.981 kb on + strandat 406.984 kb on - strandat 406.989 kb on - strandat 407.052 kb on - strandat 407.067 kb on + strandat 407.074 kb on + strandat 407.082 kb on - strandat 407.140 kb on + strand, within MPMX20_00389at 407.142 kb on - strand, within MPMX20_00389at 407.226 kb on - strand, within MPMX20_00389at 407.247 kb on + strand, within MPMX20_00389at 407.305 kb on + strand, within MPMX20_00389at 407.305 kb on + strand, within MPMX20_00389at 407.313 kb on - strand, within MPMX20_00389at 407.313 kb on - strand, within MPMX20_00389at 407.313 kb on - strand, within MPMX20_00389at 407.402 kb on - strandat 407.418 kb on - strandat 407.433 kb on - strandat 407.472 kb on - strandat 407.579 kb on - strand, within MPMX20_00390at 407.584 kb on - strand, within MPMX20_00390at 407.595 kb on - strand, within MPMX20_00390at 407.627 kb on - strand, within MPMX20_00390at 407.746 kb on + strand, within MPMX20_00390at 407.746 kb on + strand, within MPMX20_00390at 407.754 kb on - strand, within MPMX20_00390at 407.754 kb on - strand, within MPMX20_00390at 407.754 kb on - strand, within MPMX20_00390at 407.754 kb on - strand, within MPMX20_00390at 407.857 kb on + strandat 407.926 kb on + strandat 407.945 kb on + strand, within MPMX20_00391at 407.946 kb on + strand, within MPMX20_00391at 407.964 kb on + strand, within MPMX20_00391at 407.989 kb on - strand, within MPMX20_00391at 408.162 kb on + strand, within MPMX20_00391at 408.171 kb on + strand, within MPMX20_00391at 408.191 kb on - strand, within MPMX20_00391at 408.197 kb on - strand, within MPMX20_00391at 408.233 kb on - strand, within MPMX20_00391at 408.249 kb on + strand, within MPMX20_00391at 408.249 kb on + strand, within MPMX20_00391at 408.361 kb on + strandat 408.366 kb on + strandat 408.366 kb on + strandat 408.366 kb on + strandat 408.374 kb on - strandat 408.374 kb on - strandat 408.374 kb on - strandat 408.374 kb on - strandat 408.444 kb on + strand, within MPMX20_00392at 408.468 kb on + strand, within MPMX20_00392at 408.492 kb on + strand, within MPMX20_00392at 408.515 kb on - strand, within MPMX20_00392at 408.534 kb on - strand, within MPMX20_00392at 408.560 kb on + strand, within MPMX20_00392at 408.560 kb on + strand, within MPMX20_00392at 408.564 kb on + strand, within MPMX20_00392at 408.711 kb on - strand, within MPMX20_00392at 408.731 kb on - strand, within MPMX20_00392at 408.743 kb on + strand, within MPMX20_00392at 408.794 kb on + strandat 408.806 kb on + strandat 408.806 kb on + strandat 408.814 kb on - strandat 408.868 kb on - strandat 408.916 kb on - strandat 408.916 kb on - strandat 408.925 kb on - strandat 409.032 kb on + strand, within MPMX20_00393at 409.063 kb on - strand, within MPMX20_00393at 409.063 kb on - strand, within MPMX20_00393at 409.064 kb on - strand, within MPMX20_00393at 409.074 kb on + strand, within MPMX20_00393at 409.082 kb on - strand, within MPMX20_00393at 409.138 kb on - strand, within MPMX20_00393at 409.169 kb on + strand, within MPMX20_00393at 409.265 kb on - strand, within MPMX20_00393at 409.274 kb on + strand, within MPMX20_00393at 409.276 kb on + strand, within MPMX20_00393at 409.329 kb on + strand, within MPMX20_00393

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Pseudomonas silesiensis TBS_010
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406,966 + +1.4
406,976 + -0.3
406,981 + -1.4
406,981 + -0.9
406,981 + -0.5
406,981 + -1.0
406,981 + +0.0
406,984 - -0.7
406,989 - -1.4
407,052 - +5.9
407,067 + +1.4
407,074 + -1.9
407,082 - -1.2
407,140 + MPMX20_00389 0.22 -0.8
407,142 - MPMX20_00389 0.23 -0.9
407,226 - MPMX20_00389 0.44 -0.0
407,247 + MPMX20_00389 0.50 +0.4
407,305 + MPMX20_00389 0.65 +0.8
407,305 + MPMX20_00389 0.65 -0.6
407,313 - MPMX20_00389 0.67 +0.4
407,313 - MPMX20_00389 0.67 -1.2
407,313 - MPMX20_00389 0.67 +0.1
407,402 - +0.5
407,418 - -0.4
407,433 - +1.3
407,472 - -0.4
407,579 - MPMX20_00390 0.24 -0.6
407,584 - MPMX20_00390 0.25 -2.2
407,595 - MPMX20_00390 0.27 -1.6
407,627 - MPMX20_00390 0.35 -1.3
407,746 + MPMX20_00390 0.64 -1.5
407,746 + MPMX20_00390 0.64 -0.5
407,754 - MPMX20_00390 0.65 +2.0
407,754 - MPMX20_00390 0.65 +0.2
407,754 - MPMX20_00390 0.65 -0.4
407,754 - MPMX20_00390 0.65 -0.9
407,857 + +1.1
407,926 + -0.5
407,945 + MPMX20_00391 0.10 -1.0
407,946 + MPMX20_00391 0.10 -1.4
407,964 + MPMX20_00391 0.14 -2.0
407,989 - MPMX20_00391 0.19 -0.8
408,162 + MPMX20_00391 0.53 -0.9
408,171 + MPMX20_00391 0.55 -2.3
408,191 - MPMX20_00391 0.59 -0.2
408,197 - MPMX20_00391 0.60 -2.0
408,233 - MPMX20_00391 0.67 -1.1
408,249 + MPMX20_00391 0.70 -1.4
408,249 + MPMX20_00391 0.70 +0.2
408,361 + -0.2
408,366 + -0.6
408,366 + -0.7
408,366 + -2.5
408,374 - -0.5
408,374 - +0.5
408,374 - -0.4
408,374 - -0.9
408,444 + MPMX20_00392 0.12 -0.6
408,468 + MPMX20_00392 0.18 -1.0
408,492 + MPMX20_00392 0.24 +1.1
408,515 - MPMX20_00392 0.30 -0.4
408,534 - MPMX20_00392 0.35 -0.7
408,560 + MPMX20_00392 0.41 -0.9
408,560 + MPMX20_00392 0.41 -1.4
408,564 + MPMX20_00392 0.42 -0.5
408,711 - MPMX20_00392 0.78 -0.0
408,731 - MPMX20_00392 0.83 -0.2
408,743 + MPMX20_00392 0.86 +3.0
408,794 + -1.2
408,806 + -0.4
408,806 + -0.3
408,814 - -1.5
408,868 - -0.9
408,916 - -1.4
408,916 - +0.1
408,925 - -0.0
409,032 + MPMX20_00393 0.21 -0.6
409,063 - MPMX20_00393 0.26 -0.4
409,063 - MPMX20_00393 0.26 -0.8
409,064 - MPMX20_00393 0.26 -0.2
409,074 + MPMX20_00393 0.28 -0.2
409,082 - MPMX20_00393 0.30 -0.0
409,138 - MPMX20_00393 0.40 +0.6
409,169 + MPMX20_00393 0.45 +0.0
409,265 - MPMX20_00393 0.63 -1.7
409,274 + MPMX20_00393 0.64 -0.9
409,276 + MPMX20_00393 0.65 -1.8
409,329 + MPMX20_00393 0.74 -0.6

Or see this region's nucleotide sequence