Experiment: M9 plate, 1:1 coculture with Pseudomonas silesiensis TBS_010
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04627 and MPMX20_04628 are separated by 616 nucleotides MPMX20_04628 and MPMX20_04629 are separated by 8 nucleotides MPMX20_04629 and MPMX20_04630 are separated by 49 nucleotides
MPMX20_04627: MPMX20_04627 - Ribosomal RNA small subunit methyltransferase G, at 4,847,663 to 4,848,286
_04627
MPMX20_04628: MPMX20_04628 - ATP synthase protein I, at 4,848,903 to 4,849,283
_04628
MPMX20_04629: MPMX20_04629 - ATP synthase subunit a, at 4,849,292 to 4,850,107
_04629
MPMX20_04630: MPMX20_04630 - ATP synthase subunit c, at 4,850,157 to 4,850,396
_04630
Position (kb)
4848
4849
4850 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 4847.952 kb on + strand, within MPMX20_04627 at 4848.015 kb on + strand, within MPMX20_04627 at 4848.015 kb on + strand, within MPMX20_04627 at 4848.015 kb on + strand, within MPMX20_04627 at 4848.020 kb on + strand, within MPMX20_04627 at 4848.020 kb on + strand, within MPMX20_04627 at 4848.020 kb on + strand, within MPMX20_04627 at 4848.023 kb on - strand, within MPMX20_04627 at 4848.025 kb on + strand, within MPMX20_04627 at 4848.025 kb on + strand, within MPMX20_04627 at 4848.025 kb on - strand, within MPMX20_04627 at 4848.028 kb on - strand, within MPMX20_04627 at 4848.028 kb on - strand, within MPMX20_04627 at 4848.028 kb on - strand, within MPMX20_04627 at 4848.028 kb on - strand, within MPMX20_04627 at 4848.030 kb on + strand, within MPMX20_04627 at 4848.030 kb on + strand, within MPMX20_04627 at 4848.030 kb on + strand, within MPMX20_04627 at 4848.030 kb on + strand, within MPMX20_04627 at 4848.030 kb on + strand, within MPMX20_04627 at 4848.030 kb on + strand, within MPMX20_04627 at 4848.030 kb on + strand, within MPMX20_04627 at 4848.030 kb on + strand, within MPMX20_04627 at 4848.030 kb on + strand, within MPMX20_04627 at 4848.030 kb on + strand, within MPMX20_04627 at 4848.030 kb on + strand, within MPMX20_04627 at 4848.030 kb on + strand, within MPMX20_04627 at 4848.033 kb on - strand, within MPMX20_04627 at 4848.033 kb on - strand, within MPMX20_04627 at 4848.033 kb on - strand, within MPMX20_04627 at 4848.033 kb on - strand, within MPMX20_04627 at 4848.033 kb on - strand, within MPMX20_04627 at 4848.033 kb on - strand, within MPMX20_04627 at 4848.038 kb on - strand, within MPMX20_04627 at 4848.038 kb on - strand, within MPMX20_04627 at 4848.038 kb on - strand, within MPMX20_04627 at 4848.038 kb on - strand, within MPMX20_04627 at 4848.038 kb on - strand, within MPMX20_04627 at 4848.038 kb on - strand, within MPMX20_04627 at 4848.038 kb on - strand, within MPMX20_04627 at 4848.053 kb on - strand, within MPMX20_04627 at 4848.068 kb on + strand, within MPMX20_04627 at 4848.068 kb on + strand, within MPMX20_04627 at 4848.068 kb on + strand, within MPMX20_04627 at 4848.076 kb on - strand, within MPMX20_04627 at 4848.076 kb on - strand, within MPMX20_04627 at 4848.118 kb on + strand, within MPMX20_04627 at 4848.119 kb on - strand, within MPMX20_04627 at 4848.119 kb on - strand, within MPMX20_04627 at 4848.126 kb on - strand, within MPMX20_04627 at 4848.221 kb on + strand, within MPMX20_04627 at 4848.238 kb on + strand at 4848.238 kb on + strand at 4848.238 kb on + strand at 4848.238 kb on + strand at 4848.244 kb on + strand at 4848.246 kb on - strand at 4848.246 kb on - strand at 4848.253 kb on - strand at 4848.253 kb on - strand at 4848.259 kb on + strand at 4848.317 kb on + strand at 4848.317 kb on + strand at 4848.317 kb on + strand at 4848.317 kb on + strand at 4848.317 kb on + strand at 4848.317 kb on + strand at 4848.317 kb on + strand at 4848.317 kb on + strand at 4848.317 kb on + strand at 4848.317 kb on + strand at 4848.317 kb on + strand at 4848.317 kb on + strand at 4848.317 kb on + strand at 4848.317 kb on + strand at 4848.325 kb on - strand at 4848.325 kb on - strand at 4848.325 kb on - strand at 4848.325 kb on - strand at 4848.325 kb on - strand at 4848.325 kb on - strand at 4848.366 kb on + strand at 4848.374 kb on + strand at 4848.374 kb on - strand at 4848.382 kb on - strand at 4848.406 kb on + strand at 4848.415 kb on + strand at 4848.415 kb on + strand at 4848.433 kb on + strand at 4848.616 kb on + strand at 4848.616 kb on + strand at 4848.616 kb on + strand at 4848.652 kb on + strand at 4848.684 kb on + strand at 4848.684 kb on + strand at 4848.684 kb on + strand at 4848.691 kb on + strand at 4848.691 kb on + strand at 4848.692 kb on - strand at 4848.692 kb on - strand at 4848.692 kb on - strand at 4848.692 kb on - strand at 4848.711 kb on - strand at 4848.804 kb on - strand at 4848.829 kb on + strand at 4848.834 kb on + strand at 4848.834 kb on + strand at 4848.835 kb on + strand at 4848.874 kb on + strand at 4848.941 kb on + strand, within MPMX20_04628 at 4848.962 kb on + strand, within MPMX20_04628 at 4849.152 kb on + strand, within MPMX20_04628 at 4849.248 kb on + strand at 4850.091 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Pseudomonas silesiensis TBS_010 remove 4,847,952 + MPMX20_04627 0.46 -0.3 4,848,015 + MPMX20_04627 0.56 -0.3 4,848,015 + MPMX20_04627 0.56 +0.5 4,848,015 + MPMX20_04627 0.56 -0.4 4,848,020 + MPMX20_04627 0.57 -0.2 4,848,020 + MPMX20_04627 0.57 +0.1 4,848,020 + MPMX20_04627 0.57 +0.3 4,848,023 - MPMX20_04627 0.58 -2.5 4,848,025 + MPMX20_04627 0.58 -2.0 4,848,025 + MPMX20_04627 0.58 +1.3 4,848,025 - MPMX20_04627 0.58 +1.5 4,848,028 - MPMX20_04627 0.58 +0.2 4,848,028 - MPMX20_04627 0.58 -0.9 4,848,028 - MPMX20_04627 0.58 -0.1 4,848,028 - MPMX20_04627 0.58 -2.3 4,848,030 + MPMX20_04627 0.59 -0.6 4,848,030 + MPMX20_04627 0.59 +2.5 4,848,030 + MPMX20_04627 0.59 +1.0 4,848,030 + MPMX20_04627 0.59 -0.1 4,848,030 + MPMX20_04627 0.59 +1.7 4,848,030 + MPMX20_04627 0.59 +2.5 4,848,030 + MPMX20_04627 0.59 +0.3 4,848,030 + MPMX20_04627 0.59 -0.9 4,848,030 + MPMX20_04627 0.59 +0.5 4,848,030 + MPMX20_04627 0.59 +0.4 4,848,030 + MPMX20_04627 0.59 +0.5 4,848,030 + MPMX20_04627 0.59 -0.5 4,848,033 - MPMX20_04627 0.59 -0.7 4,848,033 - MPMX20_04627 0.59 +1.4 4,848,033 - MPMX20_04627 0.59 -0.1 4,848,033 - MPMX20_04627 0.59 +1.1 4,848,033 - MPMX20_04627 0.59 +1.1 4,848,033 - MPMX20_04627 0.59 -2.3 4,848,038 - MPMX20_04627 0.60 +1.0 4,848,038 - MPMX20_04627 0.60 +0.7 4,848,038 - MPMX20_04627 0.60 +0.5 4,848,038 - MPMX20_04627 0.60 -0.3 4,848,038 - MPMX20_04627 0.60 +0.5 4,848,038 - MPMX20_04627 0.60 +1.0 4,848,038 - MPMX20_04627 0.60 -0.3 4,848,053 - MPMX20_04627 0.62 -0.8 4,848,068 + MPMX20_04627 0.65 -0.0 4,848,068 + MPMX20_04627 0.65 -0.4 4,848,068 + MPMX20_04627 0.65 -0.2 4,848,076 - MPMX20_04627 0.66 -0.6 4,848,076 - MPMX20_04627 0.66 +3.7 4,848,118 + MPMX20_04627 0.73 +0.9 4,848,119 - MPMX20_04627 0.73 -0.5 4,848,119 - MPMX20_04627 0.73 -0.6 4,848,126 - MPMX20_04627 0.74 +0.5 4,848,221 + MPMX20_04627 0.89 +1.3 4,848,238 + -0.8 4,848,238 + -2.2 4,848,238 + +1.8 4,848,238 + -0.0 4,848,244 + -0.5 4,848,246 - +1.7 4,848,246 - -0.5 4,848,253 - +1.4 4,848,253 - -0.2 4,848,259 + +1.2 4,848,317 + -0.0 4,848,317 + -0.8 4,848,317 + -0.0 4,848,317 + -1.5 4,848,317 + -0.0 4,848,317 + +0.5 4,848,317 + +0.5 4,848,317 + -0.7 4,848,317 + +1.3 4,848,317 + +1.5 4,848,317 + -0.2 4,848,317 + +0.2 4,848,317 + -0.4 4,848,317 + -0.9 4,848,325 - -2.1 4,848,325 - +1.1 4,848,325 - +0.7 4,848,325 - -1.0 4,848,325 - -1.3 4,848,325 - -1.5 4,848,366 + +0.7 4,848,374 + +0.3 4,848,374 - -0.9 4,848,382 - -0.3 4,848,406 + -0.6 4,848,415 + +0.7 4,848,415 + +0.2 4,848,433 + +0.3 4,848,616 + +0.3 4,848,616 + +0.5 4,848,616 + -2.6 4,848,652 + +0.0 4,848,684 + -1.8 4,848,684 + -0.1 4,848,684 + +0.3 4,848,691 + -0.3 4,848,691 + +1.5 4,848,692 - +1.0 4,848,692 - -3.2 4,848,692 - +0.5 4,848,692 - -0.9 4,848,711 - +1.0 4,848,804 - +0.5 4,848,829 + +0.2 4,848,834 + -1.7 4,848,834 + -0.2 4,848,835 + -2.0 4,848,874 + +0.2 4,848,941 + MPMX20_04628 0.10 +3.9 4,848,962 + MPMX20_04628 0.15 -1.2 4,849,152 + MPMX20_04628 0.65 +4.1 4,849,248 + +0.5 4,850,091 + -0.5
Or see this region's nucleotide sequence