Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04628

Experiment: M9 plate, 1:1 coculture with Pseudomonas silesiensis TBS_010

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_04627 and MPMX20_04628 are separated by 616 nucleotidesMPMX20_04628 and MPMX20_04629 are separated by 8 nucleotidesMPMX20_04629 and MPMX20_04630 are separated by 49 nucleotides MPMX20_04627: MPMX20_04627 - Ribosomal RNA small subunit methyltransferase G, at 4,847,663 to 4,848,286 _04627 MPMX20_04628: MPMX20_04628 - ATP synthase protein I, at 4,848,903 to 4,849,283 _04628 MPMX20_04629: MPMX20_04629 - ATP synthase subunit a, at 4,849,292 to 4,850,107 _04629 MPMX20_04630: MPMX20_04630 - ATP synthase subunit c, at 4,850,157 to 4,850,396 _04630 Position (kb) 4848 4849 4850Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4847.952 kb on + strand, within MPMX20_04627at 4848.015 kb on + strand, within MPMX20_04627at 4848.015 kb on + strand, within MPMX20_04627at 4848.015 kb on + strand, within MPMX20_04627at 4848.020 kb on + strand, within MPMX20_04627at 4848.020 kb on + strand, within MPMX20_04627at 4848.020 kb on + strand, within MPMX20_04627at 4848.023 kb on - strand, within MPMX20_04627at 4848.025 kb on + strand, within MPMX20_04627at 4848.025 kb on + strand, within MPMX20_04627at 4848.025 kb on - strand, within MPMX20_04627at 4848.028 kb on - strand, within MPMX20_04627at 4848.028 kb on - strand, within MPMX20_04627at 4848.028 kb on - strand, within MPMX20_04627at 4848.028 kb on - strand, within MPMX20_04627at 4848.030 kb on + strand, within MPMX20_04627at 4848.030 kb on + strand, within MPMX20_04627at 4848.030 kb on + strand, within MPMX20_04627at 4848.030 kb on + strand, within MPMX20_04627at 4848.030 kb on + strand, within MPMX20_04627at 4848.030 kb on + strand, within MPMX20_04627at 4848.030 kb on + strand, within MPMX20_04627at 4848.030 kb on + strand, within MPMX20_04627at 4848.030 kb on + strand, within MPMX20_04627at 4848.030 kb on + strand, within MPMX20_04627at 4848.030 kb on + strand, within MPMX20_04627at 4848.030 kb on + strand, within MPMX20_04627at 4848.033 kb on - strand, within MPMX20_04627at 4848.033 kb on - strand, within MPMX20_04627at 4848.033 kb on - strand, within MPMX20_04627at 4848.033 kb on - strand, within MPMX20_04627at 4848.033 kb on - strand, within MPMX20_04627at 4848.033 kb on - strand, within MPMX20_04627at 4848.038 kb on - strand, within MPMX20_04627at 4848.038 kb on - strand, within MPMX20_04627at 4848.038 kb on - strand, within MPMX20_04627at 4848.038 kb on - strand, within MPMX20_04627at 4848.038 kb on - strand, within MPMX20_04627at 4848.038 kb on - strand, within MPMX20_04627at 4848.038 kb on - strand, within MPMX20_04627at 4848.053 kb on - strand, within MPMX20_04627at 4848.068 kb on + strand, within MPMX20_04627at 4848.068 kb on + strand, within MPMX20_04627at 4848.068 kb on + strand, within MPMX20_04627at 4848.076 kb on - strand, within MPMX20_04627at 4848.076 kb on - strand, within MPMX20_04627at 4848.118 kb on + strand, within MPMX20_04627at 4848.119 kb on - strand, within MPMX20_04627at 4848.119 kb on - strand, within MPMX20_04627at 4848.126 kb on - strand, within MPMX20_04627at 4848.221 kb on + strand, within MPMX20_04627at 4848.238 kb on + strandat 4848.238 kb on + strandat 4848.238 kb on + strandat 4848.238 kb on + strandat 4848.244 kb on + strandat 4848.246 kb on - strandat 4848.246 kb on - strandat 4848.253 kb on - strandat 4848.253 kb on - strandat 4848.259 kb on + strandat 4848.317 kb on + strandat 4848.317 kb on + strandat 4848.317 kb on + strandat 4848.317 kb on + strandat 4848.317 kb on + strandat 4848.317 kb on + strandat 4848.317 kb on + strandat 4848.317 kb on + strandat 4848.317 kb on + strandat 4848.317 kb on + strandat 4848.317 kb on + strandat 4848.317 kb on + strandat 4848.317 kb on + strandat 4848.317 kb on + strandat 4848.325 kb on - strandat 4848.325 kb on - strandat 4848.325 kb on - strandat 4848.325 kb on - strandat 4848.325 kb on - strandat 4848.325 kb on - strandat 4848.366 kb on + strandat 4848.374 kb on + strandat 4848.374 kb on - strandat 4848.382 kb on - strandat 4848.406 kb on + strandat 4848.415 kb on + strandat 4848.415 kb on + strandat 4848.433 kb on + strandat 4848.616 kb on + strandat 4848.616 kb on + strandat 4848.616 kb on + strandat 4848.652 kb on + strandat 4848.684 kb on + strandat 4848.684 kb on + strandat 4848.684 kb on + strandat 4848.691 kb on + strandat 4848.691 kb on + strandat 4848.692 kb on - strandat 4848.692 kb on - strandat 4848.692 kb on - strandat 4848.692 kb on - strandat 4848.711 kb on - strandat 4848.804 kb on - strandat 4848.829 kb on + strandat 4848.834 kb on + strandat 4848.834 kb on + strandat 4848.835 kb on + strandat 4848.874 kb on + strandat 4848.941 kb on + strand, within MPMX20_04628at 4848.962 kb on + strand, within MPMX20_04628at 4849.152 kb on + strand, within MPMX20_04628at 4849.248 kb on + strandat 4850.091 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Pseudomonas silesiensis TBS_010
remove
4,847,952 + MPMX20_04627 0.46 -0.3
4,848,015 + MPMX20_04627 0.56 -0.3
4,848,015 + MPMX20_04627 0.56 +0.5
4,848,015 + MPMX20_04627 0.56 -0.4
4,848,020 + MPMX20_04627 0.57 -0.2
4,848,020 + MPMX20_04627 0.57 +0.1
4,848,020 + MPMX20_04627 0.57 +0.3
4,848,023 - MPMX20_04627 0.58 -2.5
4,848,025 + MPMX20_04627 0.58 -2.0
4,848,025 + MPMX20_04627 0.58 +1.3
4,848,025 - MPMX20_04627 0.58 +1.5
4,848,028 - MPMX20_04627 0.58 +0.2
4,848,028 - MPMX20_04627 0.58 -0.9
4,848,028 - MPMX20_04627 0.58 -0.1
4,848,028 - MPMX20_04627 0.58 -2.3
4,848,030 + MPMX20_04627 0.59 -0.6
4,848,030 + MPMX20_04627 0.59 +2.5
4,848,030 + MPMX20_04627 0.59 +1.0
4,848,030 + MPMX20_04627 0.59 -0.1
4,848,030 + MPMX20_04627 0.59 +1.7
4,848,030 + MPMX20_04627 0.59 +2.5
4,848,030 + MPMX20_04627 0.59 +0.3
4,848,030 + MPMX20_04627 0.59 -0.9
4,848,030 + MPMX20_04627 0.59 +0.5
4,848,030 + MPMX20_04627 0.59 +0.4
4,848,030 + MPMX20_04627 0.59 +0.5
4,848,030 + MPMX20_04627 0.59 -0.5
4,848,033 - MPMX20_04627 0.59 -0.7
4,848,033 - MPMX20_04627 0.59 +1.4
4,848,033 - MPMX20_04627 0.59 -0.1
4,848,033 - MPMX20_04627 0.59 +1.1
4,848,033 - MPMX20_04627 0.59 +1.1
4,848,033 - MPMX20_04627 0.59 -2.3
4,848,038 - MPMX20_04627 0.60 +1.0
4,848,038 - MPMX20_04627 0.60 +0.7
4,848,038 - MPMX20_04627 0.60 +0.5
4,848,038 - MPMX20_04627 0.60 -0.3
4,848,038 - MPMX20_04627 0.60 +0.5
4,848,038 - MPMX20_04627 0.60 +1.0
4,848,038 - MPMX20_04627 0.60 -0.3
4,848,053 - MPMX20_04627 0.62 -0.8
4,848,068 + MPMX20_04627 0.65 -0.0
4,848,068 + MPMX20_04627 0.65 -0.4
4,848,068 + MPMX20_04627 0.65 -0.2
4,848,076 - MPMX20_04627 0.66 -0.6
4,848,076 - MPMX20_04627 0.66 +3.7
4,848,118 + MPMX20_04627 0.73 +0.9
4,848,119 - MPMX20_04627 0.73 -0.5
4,848,119 - MPMX20_04627 0.73 -0.6
4,848,126 - MPMX20_04627 0.74 +0.5
4,848,221 + MPMX20_04627 0.89 +1.3
4,848,238 + -0.8
4,848,238 + -2.2
4,848,238 + +1.8
4,848,238 + -0.0
4,848,244 + -0.5
4,848,246 - +1.7
4,848,246 - -0.5
4,848,253 - +1.4
4,848,253 - -0.2
4,848,259 + +1.2
4,848,317 + -0.0
4,848,317 + -0.8
4,848,317 + -0.0
4,848,317 + -1.5
4,848,317 + -0.0
4,848,317 + +0.5
4,848,317 + +0.5
4,848,317 + -0.7
4,848,317 + +1.3
4,848,317 + +1.5
4,848,317 + -0.2
4,848,317 + +0.2
4,848,317 + -0.4
4,848,317 + -0.9
4,848,325 - -2.1
4,848,325 - +1.1
4,848,325 - +0.7
4,848,325 - -1.0
4,848,325 - -1.3
4,848,325 - -1.5
4,848,366 + +0.7
4,848,374 + +0.3
4,848,374 - -0.9
4,848,382 - -0.3
4,848,406 + -0.6
4,848,415 + +0.7
4,848,415 + +0.2
4,848,433 + +0.3
4,848,616 + +0.3
4,848,616 + +0.5
4,848,616 + -2.6
4,848,652 + +0.0
4,848,684 + -1.8
4,848,684 + -0.1
4,848,684 + +0.3
4,848,691 + -0.3
4,848,691 + +1.5
4,848,692 - +1.0
4,848,692 - -3.2
4,848,692 - +0.5
4,848,692 - -0.9
4,848,711 - +1.0
4,848,804 - +0.5
4,848,829 + +0.2
4,848,834 + -1.7
4,848,834 + -0.2
4,848,835 + -2.0
4,848,874 + +0.2
4,848,941 + MPMX20_04628 0.10 +3.9
4,848,962 + MPMX20_04628 0.15 -1.2
4,849,152 + MPMX20_04628 0.65 +4.1
4,849,248 + +0.5
4,850,091 + -0.5

Or see this region's nucleotide sequence