Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00414

Experiment: M9 plate, 1:1 coculture with Pseudomonas silesiensis TBS_010

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00413 and MPMX20_00414 are separated by 195 nucleotidesMPMX20_00414 and MPMX20_00415 are separated by 126 nucleotidesMPMX20_00415 and MPMX20_00416 are separated by 49 nucleotides MPMX20_00413: MPMX20_00413 - Prophage integrase IntS, at 429,409 to 430,665 _00413 MPMX20_00414: MPMX20_00414 - tRNA-Phe, at 430,861 to 430,936 _00414 MPMX20_00415: MPMX20_00415 - hypothetical protein, at 431,063 to 431,638 _00415 MPMX20_00416: MPMX20_00416 - Thiol:disulfide interchange protein DsbD, at 431,688 to 433,391 _00416 Position (kb) 430 431Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 429.937 kb on + strand, within MPMX20_00413at 429.967 kb on - strand, within MPMX20_00413at 429.969 kb on + strand, within MPMX20_00413at 429.983 kb on - strand, within MPMX20_00413at 429.991 kb on + strand, within MPMX20_00413at 429.991 kb on + strand, within MPMX20_00413at 429.991 kb on + strand, within MPMX20_00413at 430.007 kb on + strand, within MPMX20_00413at 430.007 kb on - strand, within MPMX20_00413at 430.012 kb on - strand, within MPMX20_00413at 430.056 kb on + strand, within MPMX20_00413at 430.058 kb on - strand, within MPMX20_00413at 430.058 kb on - strand, within MPMX20_00413at 430.061 kb on + strand, within MPMX20_00413at 430.064 kb on - strand, within MPMX20_00413at 430.091 kb on - strand, within MPMX20_00413at 430.097 kb on + strand, within MPMX20_00413at 430.102 kb on + strand, within MPMX20_00413at 430.105 kb on - strand, within MPMX20_00413at 430.113 kb on + strand, within MPMX20_00413at 430.121 kb on - strand, within MPMX20_00413at 430.145 kb on - strand, within MPMX20_00413at 430.145 kb on - strand, within MPMX20_00413at 430.145 kb on - strand, within MPMX20_00413at 430.145 kb on - strand, within MPMX20_00413at 430.284 kb on - strand, within MPMX20_00413at 430.318 kb on + strand, within MPMX20_00413at 430.318 kb on + strand, within MPMX20_00413at 430.318 kb on + strand, within MPMX20_00413at 430.318 kb on + strand, within MPMX20_00413at 430.318 kb on + strand, within MPMX20_00413at 430.318 kb on + strand, within MPMX20_00413at 430.318 kb on + strand, within MPMX20_00413at 430.326 kb on - strand, within MPMX20_00413at 430.326 kb on - strand, within MPMX20_00413at 430.326 kb on - strand, within MPMX20_00413at 430.326 kb on - strand, within MPMX20_00413at 430.326 kb on - strand, within MPMX20_00413at 430.326 kb on - strand, within MPMX20_00413at 430.326 kb on - strand, within MPMX20_00413at 430.326 kb on - strand, within MPMX20_00413at 430.326 kb on - strand, within MPMX20_00413at 430.364 kb on - strand, within MPMX20_00413at 430.364 kb on - strand, within MPMX20_00413at 430.364 kb on - strand, within MPMX20_00413at 430.364 kb on - strand, within MPMX20_00413at 430.375 kb on + strand, within MPMX20_00413at 430.375 kb on + strand, within MPMX20_00413at 430.375 kb on + strand, within MPMX20_00413at 430.383 kb on - strand, within MPMX20_00413at 430.383 kb on - strand, within MPMX20_00413at 430.393 kb on - strand, within MPMX20_00413at 430.425 kb on + strand, within MPMX20_00413at 430.425 kb on + strand, within MPMX20_00413at 430.425 kb on + strand, within MPMX20_00413at 430.430 kb on + strand, within MPMX20_00413at 430.433 kb on - strand, within MPMX20_00413at 430.433 kb on - strand, within MPMX20_00413at 430.433 kb on - strand, within MPMX20_00413at 430.438 kb on - strand, within MPMX20_00413at 430.573 kb on - strandat 430.655 kb on + strandat 430.713 kb on + strandat 430.719 kb on + strandat 430.726 kb on + strandat 430.733 kb on + strandat 430.820 kb on - strandat 430.836 kb on + strandat 431.061 kb on + strandat 431.061 kb on + strandat 431.069 kb on - strandat 431.069 kb on - strandat 431.069 kb on - strandat 431.069 kb on - strandat 431.082 kb on + strandat 431.082 kb on + strandat 431.082 kb on + strandat 431.090 kb on - strandat 431.090 kb on - strandat 431.127 kb on + strand, within MPMX20_00415at 431.235 kb on - strand, within MPMX20_00415at 431.306 kb on + strand, within MPMX20_00415at 431.316 kb on + strand, within MPMX20_00415at 431.324 kb on + strand, within MPMX20_00415at 431.324 kb on - strand, within MPMX20_00415at 431.324 kb on - strand, within MPMX20_00415at 431.366 kb on - strand, within MPMX20_00415at 431.386 kb on - strand, within MPMX20_00415at 431.391 kb on - strand, within MPMX20_00415at 431.391 kb on - strand, within MPMX20_00415at 431.477 kb on + strand, within MPMX20_00415at 431.480 kb on - strand, within MPMX20_00415at 431.485 kb on - strand, within MPMX20_00415at 431.487 kb on + strand, within MPMX20_00415at 431.487 kb on + strand, within MPMX20_00415at 431.487 kb on + strand, within MPMX20_00415at 431.487 kb on + strand, within MPMX20_00415at 431.487 kb on + strand, within MPMX20_00415at 431.487 kb on + strand, within MPMX20_00415at 431.495 kb on - strand, within MPMX20_00415at 431.495 kb on - strand, within MPMX20_00415at 431.495 kb on - strand, within MPMX20_00415at 431.495 kb on - strand, within MPMX20_00415at 431.519 kb on - strand, within MPMX20_00415at 431.534 kb on - strand, within MPMX20_00415at 431.657 kb on + strandat 431.672 kb on - strandat 431.770 kb on - strandat 431.771 kb on - strandat 431.801 kb on - strandat 431.838 kb on - strandat 431.839 kb on + strandat 431.839 kb on + strandat 431.868 kb on + strand, within MPMX20_00416at 431.868 kb on + strand, within MPMX20_00416at 431.876 kb on - strand, within MPMX20_00416at 431.876 kb on - strand, within MPMX20_00416at 431.933 kb on + strand, within MPMX20_00416

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Pseudomonas silesiensis TBS_010
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429,937 + MPMX20_00413 0.42 -0.3
429,967 - MPMX20_00413 0.44 -0.6
429,969 + MPMX20_00413 0.45 +1.0
429,983 - MPMX20_00413 0.46 +0.1
429,991 + MPMX20_00413 0.46 +1.6
429,991 + MPMX20_00413 0.46 -0.3
429,991 + MPMX20_00413 0.46 -0.3
430,007 + MPMX20_00413 0.48 -0.8
430,007 - MPMX20_00413 0.48 -0.4
430,012 - MPMX20_00413 0.48 -0.4
430,056 + MPMX20_00413 0.51 +0.3
430,058 - MPMX20_00413 0.52 +0.2
430,058 - MPMX20_00413 0.52 +0.3
430,061 + MPMX20_00413 0.52 +0.0
430,064 - MPMX20_00413 0.52 -0.6
430,091 - MPMX20_00413 0.54 -0.0
430,097 + MPMX20_00413 0.55 -0.8
430,102 + MPMX20_00413 0.55 +1.0
430,105 - MPMX20_00413 0.55 -1.0
430,113 + MPMX20_00413 0.56 -0.9
430,121 - MPMX20_00413 0.57 +0.1
430,145 - MPMX20_00413 0.59 +0.2
430,145 - MPMX20_00413 0.59 -1.2
430,145 - MPMX20_00413 0.59 -0.3
430,145 - MPMX20_00413 0.59 +0.2
430,284 - MPMX20_00413 0.70 -0.0
430,318 + MPMX20_00413 0.72 +0.7
430,318 + MPMX20_00413 0.72 -1.1
430,318 + MPMX20_00413 0.72 -3.0
430,318 + MPMX20_00413 0.72 +1.9
430,318 + MPMX20_00413 0.72 -1.2
430,318 + MPMX20_00413 0.72 -0.7
430,318 + MPMX20_00413 0.72 -0.8
430,326 - MPMX20_00413 0.73 +0.7
430,326 - MPMX20_00413 0.73 +0.8
430,326 - MPMX20_00413 0.73 +2.2
430,326 - MPMX20_00413 0.73 +0.7
430,326 - MPMX20_00413 0.73 +0.9
430,326 - MPMX20_00413 0.73 -1.0
430,326 - MPMX20_00413 0.73 +0.6
430,326 - MPMX20_00413 0.73 +1.6
430,326 - MPMX20_00413 0.73 -1.1
430,364 - MPMX20_00413 0.76 -2.3
430,364 - MPMX20_00413 0.76 -1.6
430,364 - MPMX20_00413 0.76 -0.6
430,364 - MPMX20_00413 0.76 +0.6
430,375 + MPMX20_00413 0.77 -1.3
430,375 + MPMX20_00413 0.77 +0.0
430,375 + MPMX20_00413 0.77 -1.0
430,383 - MPMX20_00413 0.77 +0.4
430,383 - MPMX20_00413 0.77 -2.6
430,393 - MPMX20_00413 0.78 +0.1
430,425 + MPMX20_00413 0.81 +1.1
430,425 + MPMX20_00413 0.81 +0.5
430,425 + MPMX20_00413 0.81 -0.7
430,430 + MPMX20_00413 0.81 -0.6
430,433 - MPMX20_00413 0.81 +0.6
430,433 - MPMX20_00413 0.81 -0.8
430,433 - MPMX20_00413 0.81 -0.0
430,438 - MPMX20_00413 0.82 +0.2
430,573 - -1.2
430,655 + -0.0
430,713 + +0.6
430,719 + -0.3
430,726 + -1.2
430,733 + +0.2
430,820 - +0.4
430,836 + -0.6
431,061 + +0.7
431,061 + -0.2
431,069 - -1.8
431,069 - -0.9
431,069 - +1.2
431,069 - -0.2
431,082 + +0.8
431,082 + -0.8
431,082 + +0.8
431,090 - +0.3
431,090 - -0.2
431,127 + MPMX20_00415 0.11 -0.2
431,235 - MPMX20_00415 0.30 -0.6
431,306 + MPMX20_00415 0.42 -0.7
431,316 + MPMX20_00415 0.44 +0.4
431,324 + MPMX20_00415 0.45 -0.9
431,324 - MPMX20_00415 0.45 -2.4
431,324 - MPMX20_00415 0.45 +0.1
431,366 - MPMX20_00415 0.53 +1.0
431,386 - MPMX20_00415 0.56 -0.1
431,391 - MPMX20_00415 0.57 -0.9
431,391 - MPMX20_00415 0.57 -0.8
431,477 + MPMX20_00415 0.72 +0.2
431,480 - MPMX20_00415 0.72 -0.4
431,485 - MPMX20_00415 0.73 +0.1
431,487 + MPMX20_00415 0.74 -0.8
431,487 + MPMX20_00415 0.74 -0.3
431,487 + MPMX20_00415 0.74 +0.6
431,487 + MPMX20_00415 0.74 +0.5
431,487 + MPMX20_00415 0.74 -1.4
431,487 + MPMX20_00415 0.74 -0.9
431,495 - MPMX20_00415 0.75 -0.4
431,495 - MPMX20_00415 0.75 +0.6
431,495 - MPMX20_00415 0.75 +4.2
431,495 - MPMX20_00415 0.75 -1.3
431,519 - MPMX20_00415 0.79 -0.9
431,534 - MPMX20_00415 0.82 +0.6
431,657 + +2.0
431,672 - +0.5
431,770 - +3.6
431,771 - -0.1
431,801 - -0.7
431,838 - -1.4
431,839 + +1.8
431,839 + +1.0
431,868 + MPMX20_00416 0.11 -0.4
431,868 + MPMX20_00416 0.11 -0.0
431,876 - MPMX20_00416 0.11 +1.9
431,876 - MPMX20_00416 0.11 +0.9
431,933 + MPMX20_00416 0.14 +1.6

Or see this region's nucleotide sequence