Experiment: 0.1X LB plate, 1:1 coculture with Paenibacillus lautus 004-C1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04553 and MPMX20_04554 are separated by 55 nucleotides MPMX20_04554 and MPMX20_04555 overlap by 100 nucleotides MPMX20_04555 and MPMX20_04556 are separated by 150 nucleotides MPMX20_04556 and MPMX20_04557 overlap by 4 nucleotides
MPMX20_04553: MPMX20_04553 - Ferrous-iron efflux pump FieF, at 4,766,125 to 4,767,018
_04553
MPMX20_04554: MPMX20_04554 - hypothetical protein, at 4,767,074 to 4,767,271
_04554
MPMX20_04555: MPMX20_04555 - Periplasmic protein CpxP, at 4,767,172 to 4,767,678
_04555
MPMX20_04556: MPMX20_04556 - Transcriptional regulatory protein CpxR, at 4,767,829 to 4,768,527
_04556
MPMX20_04557: MPMX20_04557 - Sensor histidine kinase CpxA, at 4,768,524 to 4,769,897
_04557
Position (kb)
4767
4768 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 4766.223 kb on + strand, within MPMX20_04553 at 4766.228 kb on + strand, within MPMX20_04553 at 4766.249 kb on + strand, within MPMX20_04553 at 4766.249 kb on + strand, within MPMX20_04553 at 4766.293 kb on + strand, within MPMX20_04553 at 4766.298 kb on + strand, within MPMX20_04553 at 4766.306 kb on - strand, within MPMX20_04553 at 4766.330 kb on + strand, within MPMX20_04553 at 4766.330 kb on + strand, within MPMX20_04553 at 4766.332 kb on + strand, within MPMX20_04553 at 4766.338 kb on - strand, within MPMX20_04553 at 4766.342 kb on + strand, within MPMX20_04553 at 4766.342 kb on + strand, within MPMX20_04553 at 4766.358 kb on - strand, within MPMX20_04553 at 4766.389 kb on - strand, within MPMX20_04553 at 4766.398 kb on + strand, within MPMX20_04553 at 4766.398 kb on + strand, within MPMX20_04553 at 4766.398 kb on + strand, within MPMX20_04553 at 4766.406 kb on - strand, within MPMX20_04553 at 4766.406 kb on - strand, within MPMX20_04553 at 4766.406 kb on - strand, within MPMX20_04553 at 4766.406 kb on - strand, within MPMX20_04553 at 4766.418 kb on + strand, within MPMX20_04553 at 4766.431 kb on + strand, within MPMX20_04553 at 4766.457 kb on + strand, within MPMX20_04553 at 4766.494 kb on - strand, within MPMX20_04553 at 4766.501 kb on + strand, within MPMX20_04553 at 4766.501 kb on + strand, within MPMX20_04553 at 4766.501 kb on + strand, within MPMX20_04553 at 4766.501 kb on + strand, within MPMX20_04553 at 4766.501 kb on + strand, within MPMX20_04553 at 4766.501 kb on + strand, within MPMX20_04553 at 4766.509 kb on - strand, within MPMX20_04553 at 4766.509 kb on - strand, within MPMX20_04553 at 4766.509 kb on - strand, within MPMX20_04553 at 4766.580 kb on - strand, within MPMX20_04553 at 4766.609 kb on - strand, within MPMX20_04553 at 4766.609 kb on - strand, within MPMX20_04553 at 4766.609 kb on - strand, within MPMX20_04553 at 4766.638 kb on + strand, within MPMX20_04553 at 4766.649 kb on + strand, within MPMX20_04553 at 4766.734 kb on - strand, within MPMX20_04553 at 4766.808 kb on + strand, within MPMX20_04553 at 4766.831 kb on + strand, within MPMX20_04553 at 4766.836 kb on + strand, within MPMX20_04553 at 4766.839 kb on - strand, within MPMX20_04553 at 4766.844 kb on - strand, within MPMX20_04553 at 4766.849 kb on - strand, within MPMX20_04553 at 4766.851 kb on - strand, within MPMX20_04553 at 4766.918 kb on + strand, within MPMX20_04553 at 4766.918 kb on + strand, within MPMX20_04553 at 4766.926 kb on - strand, within MPMX20_04553 at 4766.926 kb on - strand, within MPMX20_04553 at 4766.989 kb on + strand at 4767.022 kb on + strand at 4767.199 kb on - strand at 4767.280 kb on + strand, within MPMX20_04555 at 4767.297 kb on + strand, within MPMX20_04555 at 4767.367 kb on - strand, within MPMX20_04555 at 4767.387 kb on + strand, within MPMX20_04555 at 4767.396 kb on - strand, within MPMX20_04555 at 4767.456 kb on + strand, within MPMX20_04555 at 4767.464 kb on - strand, within MPMX20_04555 at 4767.464 kb on - strand, within MPMX20_04555 at 4767.543 kb on + strand, within MPMX20_04555 at 4767.570 kb on - strand, within MPMX20_04555 at 4767.629 kb on - strand at 4767.629 kb on - strand at 4767.629 kb on - strand at 4767.663 kb on + strand at 4767.673 kb on + strand at 4767.757 kb on + strand at 4767.797 kb on - strand at 4768.026 kb on + strand, within MPMX20_04556 at 4768.044 kb on - strand, within MPMX20_04556 at 4768.068 kb on + strand, within MPMX20_04556 at 4768.076 kb on + strand, within MPMX20_04556 at 4768.084 kb on - strand, within MPMX20_04556 at 4768.094 kb on + strand, within MPMX20_04556 at 4768.094 kb on + strand, within MPMX20_04556 at 4768.094 kb on + strand, within MPMX20_04556 at 4768.094 kb on + strand, within MPMX20_04556 at 4768.102 kb on - strand, within MPMX20_04556 at 4768.102 kb on - strand, within MPMX20_04556 at 4768.102 kb on - strand, within MPMX20_04556 at 4768.102 kb on - strand, within MPMX20_04556 at 4768.102 kb on - strand, within MPMX20_04556 at 4768.102 kb on - strand, within MPMX20_04556 at 4768.158 kb on + strand, within MPMX20_04556 at 4768.168 kb on + strand, within MPMX20_04556 at 4768.176 kb on - strand, within MPMX20_04556 at 4768.353 kb on + strand, within MPMX20_04556 at 4768.430 kb on + strand, within MPMX20_04556 at 4768.479 kb on + strand at 4768.487 kb on - strand at 4768.487 kb on - strand at 4768.534 kb on + strand at 4768.542 kb on + strand at 4768.593 kb on + strand at 4768.603 kb on + strand at 4768.635 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Paenibacillus lautus 004-C1 remove 4,766,223 + MPMX20_04553 0.11 -1.1 4,766,228 + MPMX20_04553 0.12 -0.7 4,766,249 + MPMX20_04553 0.14 -1.9 4,766,249 + MPMX20_04553 0.14 -2.0 4,766,293 + MPMX20_04553 0.19 +0.6 4,766,298 + MPMX20_04553 0.19 -4.4 4,766,306 - MPMX20_04553 0.20 +0.1 4,766,330 + MPMX20_04553 0.23 -0.6 4,766,330 + MPMX20_04553 0.23 +0.6 4,766,332 + MPMX20_04553 0.23 -0.2 4,766,338 - MPMX20_04553 0.24 -0.2 4,766,342 + MPMX20_04553 0.24 -0.1 4,766,342 + MPMX20_04553 0.24 -1.0 4,766,358 - MPMX20_04553 0.26 -1.1 4,766,389 - MPMX20_04553 0.30 -0.4 4,766,398 + MPMX20_04553 0.31 +0.3 4,766,398 + MPMX20_04553 0.31 +0.6 4,766,398 + MPMX20_04553 0.31 -2.1 4,766,406 - MPMX20_04553 0.31 -0.6 4,766,406 - MPMX20_04553 0.31 -1.5 4,766,406 - MPMX20_04553 0.31 +2.1 4,766,406 - MPMX20_04553 0.31 -0.4 4,766,418 + MPMX20_04553 0.33 -0.8 4,766,431 + MPMX20_04553 0.34 +0.8 4,766,457 + MPMX20_04553 0.37 +3.5 4,766,494 - MPMX20_04553 0.41 -0.4 4,766,501 + MPMX20_04553 0.42 +1.1 4,766,501 + MPMX20_04553 0.42 -1.7 4,766,501 + MPMX20_04553 0.42 -1.4 4,766,501 + MPMX20_04553 0.42 -0.1 4,766,501 + MPMX20_04553 0.42 +0.8 4,766,501 + MPMX20_04553 0.42 -2.2 4,766,509 - MPMX20_04553 0.43 -2.2 4,766,509 - MPMX20_04553 0.43 -2.1 4,766,509 - MPMX20_04553 0.43 -0.2 4,766,580 - MPMX20_04553 0.51 +2.7 4,766,609 - MPMX20_04553 0.54 -1.9 4,766,609 - MPMX20_04553 0.54 +0.7 4,766,609 - MPMX20_04553 0.54 +1.3 4,766,638 + MPMX20_04553 0.57 -1.6 4,766,649 + MPMX20_04553 0.59 +1.5 4,766,734 - MPMX20_04553 0.68 -0.8 4,766,808 + MPMX20_04553 0.76 -0.5 4,766,831 + MPMX20_04553 0.79 -1.3 4,766,836 + MPMX20_04553 0.80 -2.7 4,766,839 - MPMX20_04553 0.80 -0.7 4,766,844 - MPMX20_04553 0.80 +0.7 4,766,849 - MPMX20_04553 0.81 -0.4 4,766,851 - MPMX20_04553 0.81 +0.6 4,766,918 + MPMX20_04553 0.89 -0.4 4,766,918 + MPMX20_04553 0.89 +0.1 4,766,926 - MPMX20_04553 0.90 -0.2 4,766,926 - MPMX20_04553 0.90 +1.5 4,766,989 + +1.4 4,767,022 + +0.1 4,767,199 - -0.4 4,767,280 + MPMX20_04555 0.21 +0.4 4,767,297 + MPMX20_04555 0.25 -0.2 4,767,367 - MPMX20_04555 0.38 +0.9 4,767,387 + MPMX20_04555 0.42 -0.3 4,767,396 - MPMX20_04555 0.44 +1.1 4,767,456 + MPMX20_04555 0.56 +0.6 4,767,464 - MPMX20_04555 0.58 +0.6 4,767,464 - MPMX20_04555 0.58 -0.1 4,767,543 + MPMX20_04555 0.73 +0.5 4,767,570 - MPMX20_04555 0.79 +1.8 4,767,629 - +0.0 4,767,629 - +0.1 4,767,629 - -0.4 4,767,663 + +0.3 4,767,673 + +0.7 4,767,757 + +0.1 4,767,797 - +1.3 4,768,026 + MPMX20_04556 0.28 -0.2 4,768,044 - MPMX20_04556 0.31 -1.0 4,768,068 + MPMX20_04556 0.34 +1.8 4,768,076 + MPMX20_04556 0.35 -0.5 4,768,084 - MPMX20_04556 0.36 -1.7 4,768,094 + MPMX20_04556 0.38 -0.2 4,768,094 + MPMX20_04556 0.38 -0.9 4,768,094 + MPMX20_04556 0.38 +1.0 4,768,094 + MPMX20_04556 0.38 +0.2 4,768,102 - MPMX20_04556 0.39 -1.3 4,768,102 - MPMX20_04556 0.39 -0.2 4,768,102 - MPMX20_04556 0.39 -1.4 4,768,102 - MPMX20_04556 0.39 -1.0 4,768,102 - MPMX20_04556 0.39 -1.2 4,768,102 - MPMX20_04556 0.39 -0.3 4,768,158 + MPMX20_04556 0.47 +1.1 4,768,168 + MPMX20_04556 0.48 +0.6 4,768,176 - MPMX20_04556 0.50 -0.2 4,768,353 + MPMX20_04556 0.75 +1.6 4,768,430 + MPMX20_04556 0.86 -0.2 4,768,479 + -1.1 4,768,487 - -0.8 4,768,487 - +2.1 4,768,534 + -1.3 4,768,542 + -1.0 4,768,593 + +0.1 4,768,603 + -0.7 4,768,635 + -0.1
Or see this region's nucleotide sequence