Experiment: 0.1X LB plate, 1:1 coculture with Paenibacillus lautus 004-C1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04535 and MPMX20_04536 are separated by 198 nucleotides MPMX20_04536 and MPMX20_04537 are separated by 94 nucleotides MPMX20_04537 and MPMX20_04538 are separated by 9 nucleotides
MPMX20_04535: MPMX20_04535 - HTH-type transcriptional repressor CytR, at 4,748,819 to 4,749,844
_04535
MPMX20_04536: MPMX20_04536 - Cell division protein FtsN, at 4,750,043 to 4,750,948
_04536
MPMX20_04537: MPMX20_04537 - ATP-dependent protease subunit HslV, at 4,751,043 to 4,751,573
_04537
MPMX20_04538: MPMX20_04538 - ATP-dependent protease ATPase subunit HslU, at 4,751,583 to 4,752,914
_04538
Position (kb)
4750
4751 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6
7 at 4749.048 kb on + strand, within MPMX20_04535 at 4749.064 kb on - strand, within MPMX20_04535 at 4749.091 kb on - strand, within MPMX20_04535 at 4749.109 kb on - strand, within MPMX20_04535 at 4749.145 kb on - strand, within MPMX20_04535 at 4749.180 kb on - strand, within MPMX20_04535 at 4749.210 kb on + strand, within MPMX20_04535 at 4749.242 kb on - strand, within MPMX20_04535 at 4749.252 kb on + strand, within MPMX20_04535 at 4749.323 kb on - strand, within MPMX20_04535 at 4749.351 kb on + strand, within MPMX20_04535 at 4749.502 kb on - strand, within MPMX20_04535 at 4749.532 kb on - strand, within MPMX20_04535 at 4749.569 kb on + strand, within MPMX20_04535 at 4749.623 kb on - strand, within MPMX20_04535 at 4749.694 kb on + strand, within MPMX20_04535 at 4749.822 kb on + strand at 4749.822 kb on + strand at 4749.830 kb on - strand at 4749.830 kb on - strand at 4749.864 kb on + strand at 4749.871 kb on - strand at 4749.872 kb on - strand at 4749.872 kb on - strand at 4749.872 kb on - strand at 4749.872 kb on - strand at 4749.872 kb on - strand at 4749.872 kb on - strand at 4749.873 kb on + strand at 4749.873 kb on + strand at 4749.881 kb on - strand at 4749.915 kb on + strand at 4749.917 kb on + strand at 4750.247 kb on - strand, within MPMX20_04536 at 4750.299 kb on - strand, within MPMX20_04536 at 4750.371 kb on + strand, within MPMX20_04536 at 4750.371 kb on + strand, within MPMX20_04536 at 4750.379 kb on - strand, within MPMX20_04536 at 4750.379 kb on - strand, within MPMX20_04536 at 4750.394 kb on + strand, within MPMX20_04536 at 4750.451 kb on + strand, within MPMX20_04536 at 4750.463 kb on + strand, within MPMX20_04536 at 4750.476 kb on - strand, within MPMX20_04536 at 4750.546 kb on + strand, within MPMX20_04536 at 4750.546 kb on + strand, within MPMX20_04536 at 4750.546 kb on + strand, within MPMX20_04536 at 4750.546 kb on + strand, within MPMX20_04536 at 4750.546 kb on + strand, within MPMX20_04536 at 4750.546 kb on + strand, within MPMX20_04536 at 4750.546 kb on + strand, within MPMX20_04536 at 4750.546 kb on + strand, within MPMX20_04536 at 4750.546 kb on + strand, within MPMX20_04536 at 4750.546 kb on + strand, within MPMX20_04536 at 4750.554 kb on - strand, within MPMX20_04536 at 4750.554 kb on - strand, within MPMX20_04536 at 4750.554 kb on - strand, within MPMX20_04536 at 4750.554 kb on - strand, within MPMX20_04536 at 4750.554 kb on - strand, within MPMX20_04536 at 4750.554 kb on - strand, within MPMX20_04536 at 4750.630 kb on + strand, within MPMX20_04536 at 4750.638 kb on - strand, within MPMX20_04536 at 4750.734 kb on - strand, within MPMX20_04536 at 4750.750 kb on + strand, within MPMX20_04536 at 4750.758 kb on - strand, within MPMX20_04536 at 4750.803 kb on + strand, within MPMX20_04536 at 4750.810 kb on - strand, within MPMX20_04536 at 4750.951 kb on + strand at 4750.993 kb on - strand at 4750.997 kb on + strand at 4751.003 kb on + strand at 4751.006 kb on - strand at 4751.111 kb on + strand, within MPMX20_04537 at 4751.111 kb on + strand, within MPMX20_04537 at 4751.111 kb on + strand, within MPMX20_04537 at 4751.111 kb on + strand, within MPMX20_04537 at 4751.119 kb on - strand, within MPMX20_04537 at 4751.119 kb on - strand, within MPMX20_04537 at 4751.119 kb on - strand, within MPMX20_04537 at 4751.119 kb on - strand, within MPMX20_04537 at 4751.119 kb on - strand, within MPMX20_04537 at 4751.203 kb on + strand, within MPMX20_04537 at 4751.203 kb on + strand, within MPMX20_04537 at 4751.203 kb on - strand, within MPMX20_04537 at 4751.213 kb on + strand, within MPMX20_04537 at 4751.244 kb on + strand, within MPMX20_04537 at 4751.266 kb on - strand, within MPMX20_04537 at 4751.309 kb on + strand, within MPMX20_04537 at 4751.431 kb on - strand, within MPMX20_04537 at 4751.467 kb on + strand, within MPMX20_04537 at 4751.545 kb on - strand at 4751.568 kb on + strand at 4751.576 kb on - strand at 4751.629 kb on - strand at 4751.645 kb on - strand at 4751.645 kb on - strand at 4751.650 kb on - strand at 4751.650 kb on - strand at 4751.650 kb on - strand at 4751.673 kb on - strand at 4751.707 kb on - strand at 4751.709 kb on + strand at 4751.712 kb on - strand at 4751.717 kb on - strand, within MPMX20_04538 at 4751.801 kb on + strand, within MPMX20_04538 at 4751.926 kb on - strand, within MPMX20_04538
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Paenibacillus lautus 004-C1 remove 4,749,048 + MPMX20_04535 0.22 +1.6 4,749,064 - MPMX20_04535 0.24 +0.1 4,749,091 - MPMX20_04535 0.27 +0.8 4,749,109 - MPMX20_04535 0.28 +0.6 4,749,145 - MPMX20_04535 0.32 +2.8 4,749,180 - MPMX20_04535 0.35 +1.1 4,749,210 + MPMX20_04535 0.38 +2.1 4,749,242 - MPMX20_04535 0.41 +1.9 4,749,252 + MPMX20_04535 0.42 +1.3 4,749,323 - MPMX20_04535 0.49 +2.3 4,749,351 + MPMX20_04535 0.52 -0.6 4,749,502 - MPMX20_04535 0.67 +2.3 4,749,532 - MPMX20_04535 0.69 +0.6 4,749,569 + MPMX20_04535 0.73 +1.6 4,749,623 - MPMX20_04535 0.78 +1.2 4,749,694 + MPMX20_04535 0.85 +2.2 4,749,822 + +2.0 4,749,822 + +0.5 4,749,830 - +0.0 4,749,830 - +0.1 4,749,864 + +0.6 4,749,871 - -0.1 4,749,872 - +1.7 4,749,872 - +2.4 4,749,872 - -0.0 4,749,872 - +0.6 4,749,872 - +2.5 4,749,872 - +1.6 4,749,873 + +0.7 4,749,873 + +3.1 4,749,881 - -0.4 4,749,915 + +0.8 4,749,917 + +2.0 4,750,247 - MPMX20_04536 0.23 -0.7 4,750,299 - MPMX20_04536 0.28 +4.1 4,750,371 + MPMX20_04536 0.36 +3.0 4,750,371 + MPMX20_04536 0.36 +3.1 4,750,379 - MPMX20_04536 0.37 +1.8 4,750,379 - MPMX20_04536 0.37 +0.9 4,750,394 + MPMX20_04536 0.39 +0.9 4,750,451 + MPMX20_04536 0.45 +0.6 4,750,463 + MPMX20_04536 0.46 +1.5 4,750,476 - MPMX20_04536 0.48 +2.7 4,750,546 + MPMX20_04536 0.56 +1.6 4,750,546 + MPMX20_04536 0.56 +0.1 4,750,546 + MPMX20_04536 0.56 +1.4 4,750,546 + MPMX20_04536 0.56 +2.2 4,750,546 + MPMX20_04536 0.56 +3.4 4,750,546 + MPMX20_04536 0.56 +1.7 4,750,546 + MPMX20_04536 0.56 +4.1 4,750,546 + MPMX20_04536 0.56 +2.8 4,750,546 + MPMX20_04536 0.56 +0.1 4,750,546 + MPMX20_04536 0.56 +1.3 4,750,554 - MPMX20_04536 0.56 +2.8 4,750,554 - MPMX20_04536 0.56 +3.9 4,750,554 - MPMX20_04536 0.56 +0.7 4,750,554 - MPMX20_04536 0.56 +0.0 4,750,554 - MPMX20_04536 0.56 +0.4 4,750,554 - MPMX20_04536 0.56 +1.6 4,750,630 + MPMX20_04536 0.65 +3.4 4,750,638 - MPMX20_04536 0.66 +4.2 4,750,734 - MPMX20_04536 0.76 +6.8 4,750,750 + MPMX20_04536 0.78 +4.1 4,750,758 - MPMX20_04536 0.79 +3.6 4,750,803 + MPMX20_04536 0.84 +3.2 4,750,810 - MPMX20_04536 0.85 +1.3 4,750,951 + +0.9 4,750,993 - +0.1 4,750,997 + -0.5 4,751,003 + -0.7 4,751,006 - +0.0 4,751,111 + MPMX20_04537 0.13 -1.7 4,751,111 + MPMX20_04537 0.13 -0.7 4,751,111 + MPMX20_04537 0.13 +1.5 4,751,111 + MPMX20_04537 0.13 +1.1 4,751,119 - MPMX20_04537 0.14 -1.9 4,751,119 - MPMX20_04537 0.14 +0.4 4,751,119 - MPMX20_04537 0.14 +0.3 4,751,119 - MPMX20_04537 0.14 -1.3 4,751,119 - MPMX20_04537 0.14 -0.3 4,751,203 + MPMX20_04537 0.30 -1.9 4,751,203 + MPMX20_04537 0.30 -1.6 4,751,203 - MPMX20_04537 0.30 -2.0 4,751,213 + MPMX20_04537 0.32 -0.6 4,751,244 + MPMX20_04537 0.38 -0.6 4,751,266 - MPMX20_04537 0.42 +0.3 4,751,309 + MPMX20_04537 0.50 -0.7 4,751,431 - MPMX20_04537 0.73 -0.3 4,751,467 + MPMX20_04537 0.80 -0.6 4,751,545 - -3.5 4,751,568 + -0.0 4,751,576 - -0.9 4,751,629 - -3.0 4,751,645 - +3.1 4,751,645 - +0.7 4,751,650 - -0.9 4,751,650 - +0.4 4,751,650 - +1.0 4,751,673 - -0.0 4,751,707 - -1.7 4,751,709 + +0.6 4,751,712 - -0.9 4,751,717 - MPMX20_04538 0.10 -1.3 4,751,801 + MPMX20_04538 0.16 +1.3 4,751,926 - MPMX20_04538 0.26 -0.0
Or see this region's nucleotide sequence