Experiment: 0.1X LB plate, 1:1 coculture with Paenibacillus lautus 004-C1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04311 and MPMX20_04312 overlap by 1 nucleotides MPMX20_04312 and MPMX20_04313 are separated by 17 nucleotides
MPMX20_04311: MPMX20_04311 - Glycogen synthase, at 4,502,443 to 4,503,876
_04311
MPMX20_04312: MPMX20_04312 - Glucose-1-phosphate adenylyltransferase, at 4,503,876 to 4,505,171
_04312
MPMX20_04313: MPMX20_04313 - Glycogen debranching enzyme, at 4,505,189 to 4,507,162
_04313
Position (kb)
4503
4504
4505
4506 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 4502.885 kb on - strand, within MPMX20_04311 at 4502.899 kb on - strand, within MPMX20_04311 at 4502.929 kb on + strand, within MPMX20_04311 at 4503.015 kb on + strand, within MPMX20_04311 at 4503.015 kb on + strand, within MPMX20_04311 at 4503.023 kb on - strand, within MPMX20_04311 at 4503.023 kb on - strand, within MPMX20_04311 at 4503.149 kb on + strand, within MPMX20_04311 at 4503.160 kb on + strand, within MPMX20_04311 at 4503.244 kb on - strand, within MPMX20_04311 at 4503.261 kb on - strand, within MPMX20_04311 at 4503.263 kb on + strand, within MPMX20_04311 at 4503.263 kb on + strand, within MPMX20_04311 at 4503.306 kb on + strand, within MPMX20_04311 at 4503.399 kb on - strand, within MPMX20_04311 at 4503.474 kb on - strand, within MPMX20_04311 at 4503.474 kb on - strand, within MPMX20_04311 at 4503.483 kb on - strand, within MPMX20_04311 at 4503.524 kb on + strand, within MPMX20_04311 at 4503.527 kb on - strand, within MPMX20_04311 at 4503.533 kb on + strand, within MPMX20_04311 at 4503.533 kb on + strand, within MPMX20_04311 at 4503.659 kb on + strand, within MPMX20_04311 at 4503.681 kb on - strand, within MPMX20_04311 at 4503.759 kb on + strand at 4503.767 kb on - strand at 4503.769 kb on + strand at 4503.769 kb on + strand at 4503.777 kb on - strand at 4503.784 kb on + strand at 4503.857 kb on - strand at 4503.886 kb on + strand at 4503.894 kb on - strand at 4503.946 kb on - strand at 4504.002 kb on - strand at 4504.039 kb on + strand, within MPMX20_04312 at 4504.087 kb on + strand, within MPMX20_04312 at 4504.131 kb on - strand, within MPMX20_04312 at 4504.184 kb on + strand, within MPMX20_04312 at 4504.217 kb on - strand, within MPMX20_04312 at 4504.273 kb on + strand, within MPMX20_04312 at 4504.303 kb on + strand, within MPMX20_04312 at 4504.317 kb on - strand, within MPMX20_04312 at 4504.327 kb on + strand, within MPMX20_04312 at 4504.379 kb on + strand, within MPMX20_04312 at 4504.382 kb on - strand, within MPMX20_04312 at 4504.386 kb on + strand, within MPMX20_04312 at 4504.394 kb on + strand, within MPMX20_04312 at 4504.394 kb on - strand, within MPMX20_04312 at 4504.403 kb on - strand, within MPMX20_04312 at 4504.486 kb on + strand, within MPMX20_04312 at 4504.486 kb on + strand, within MPMX20_04312 at 4504.494 kb on - strand, within MPMX20_04312 at 4504.715 kb on + strand, within MPMX20_04312 at 4504.726 kb on - strand, within MPMX20_04312 at 4504.927 kb on - strand, within MPMX20_04312 at 4504.928 kb on + strand, within MPMX20_04312 at 4504.942 kb on + strand, within MPMX20_04312 at 4504.986 kb on - strand, within MPMX20_04312 at 4504.990 kb on + strand, within MPMX20_04312 at 4504.992 kb on + strand, within MPMX20_04312 at 4505.047 kb on - strand at 4505.156 kb on + strand at 4505.449 kb on + strand, within MPMX20_04313 at 4505.449 kb on + strand, within MPMX20_04313 at 4505.498 kb on + strand, within MPMX20_04313 at 4505.501 kb on - strand, within MPMX20_04313 at 4505.508 kb on + strand, within MPMX20_04313 at 4505.508 kb on + strand, within MPMX20_04313 at 4505.516 kb on - strand, within MPMX20_04313 at 4505.539 kb on - strand, within MPMX20_04313 at 4505.550 kb on + strand, within MPMX20_04313 at 4505.599 kb on - strand, within MPMX20_04313 at 4505.627 kb on - strand, within MPMX20_04313 at 4505.642 kb on - strand, within MPMX20_04313 at 4505.666 kb on - strand, within MPMX20_04313 at 4505.668 kb on + strand, within MPMX20_04313 at 4505.701 kb on + strand, within MPMX20_04313 at 4505.701 kb on + strand, within MPMX20_04313 at 4505.709 kb on - strand, within MPMX20_04313 at 4505.709 kb on - strand, within MPMX20_04313 at 4505.709 kb on - strand, within MPMX20_04313 at 4505.709 kb on - strand, within MPMX20_04313 at 4505.722 kb on - strand, within MPMX20_04313 at 4505.722 kb on - strand, within MPMX20_04313 at 4505.824 kb on - strand, within MPMX20_04313 at 4506.062 kb on - strand, within MPMX20_04313 at 4506.074 kb on - strand, within MPMX20_04313 at 4506.145 kb on - strand, within MPMX20_04313
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Paenibacillus lautus 004-C1 remove 4,502,885 - MPMX20_04311 0.31 -1.2 4,502,899 - MPMX20_04311 0.32 -0.2 4,502,929 + MPMX20_04311 0.34 -0.3 4,503,015 + MPMX20_04311 0.40 -0.9 4,503,015 + MPMX20_04311 0.40 -2.3 4,503,023 - MPMX20_04311 0.40 -1.7 4,503,023 - MPMX20_04311 0.40 +0.0 4,503,149 + MPMX20_04311 0.49 -0.1 4,503,160 + MPMX20_04311 0.50 -0.8 4,503,244 - MPMX20_04311 0.56 -0.3 4,503,261 - MPMX20_04311 0.57 -0.4 4,503,263 + MPMX20_04311 0.57 -0.4 4,503,263 + MPMX20_04311 0.57 -2.1 4,503,306 + MPMX20_04311 0.60 +0.1 4,503,399 - MPMX20_04311 0.67 -2.3 4,503,474 - MPMX20_04311 0.72 -1.7 4,503,474 - MPMX20_04311 0.72 +0.2 4,503,483 - MPMX20_04311 0.73 -1.2 4,503,524 + MPMX20_04311 0.75 -1.2 4,503,527 - MPMX20_04311 0.76 -0.8 4,503,533 + MPMX20_04311 0.76 -1.3 4,503,533 + MPMX20_04311 0.76 -0.8 4,503,659 + MPMX20_04311 0.85 -0.3 4,503,681 - MPMX20_04311 0.86 -1.3 4,503,759 + -2.5 4,503,767 - -1.2 4,503,769 + -1.9 4,503,769 + -0.5 4,503,777 - +0.2 4,503,784 + -0.6 4,503,857 - -1.1 4,503,886 + +1.2 4,503,894 - +0.4 4,503,946 - -2.0 4,504,002 - -1.7 4,504,039 + MPMX20_04312 0.13 -1.0 4,504,087 + MPMX20_04312 0.16 -0.3 4,504,131 - MPMX20_04312 0.20 -1.4 4,504,184 + MPMX20_04312 0.24 -1.2 4,504,217 - MPMX20_04312 0.26 -1.5 4,504,273 + MPMX20_04312 0.31 -3.0 4,504,303 + MPMX20_04312 0.33 -1.7 4,504,317 - MPMX20_04312 0.34 -1.1 4,504,327 + MPMX20_04312 0.35 -0.2 4,504,379 + MPMX20_04312 0.39 -3.7 4,504,382 - MPMX20_04312 0.39 -0.4 4,504,386 + MPMX20_04312 0.39 -0.4 4,504,394 + MPMX20_04312 0.40 -0.1 4,504,394 - MPMX20_04312 0.40 -2.0 4,504,403 - MPMX20_04312 0.41 -1.3 4,504,486 + MPMX20_04312 0.47 -1.1 4,504,486 + MPMX20_04312 0.47 -2.7 4,504,494 - MPMX20_04312 0.48 -3.1 4,504,715 + MPMX20_04312 0.65 -0.6 4,504,726 - MPMX20_04312 0.66 -3.8 4,504,927 - MPMX20_04312 0.81 -3.0 4,504,928 + MPMX20_04312 0.81 +2.2 4,504,942 + MPMX20_04312 0.82 -2.9 4,504,986 - MPMX20_04312 0.86 -2.1 4,504,990 + MPMX20_04312 0.86 +0.2 4,504,992 + MPMX20_04312 0.86 -1.6 4,505,047 - -2.1 4,505,156 + -0.4 4,505,449 + MPMX20_04313 0.13 -0.8 4,505,449 + MPMX20_04313 0.13 -0.3 4,505,498 + MPMX20_04313 0.16 -1.8 4,505,501 - MPMX20_04313 0.16 +0.3 4,505,508 + MPMX20_04313 0.16 -0.4 4,505,508 + MPMX20_04313 0.16 -1.9 4,505,516 - MPMX20_04313 0.17 +0.2 4,505,539 - MPMX20_04313 0.18 -2.3 4,505,550 + MPMX20_04313 0.18 -0.5 4,505,599 - MPMX20_04313 0.21 +0.7 4,505,627 - MPMX20_04313 0.22 +1.3 4,505,642 - MPMX20_04313 0.23 -0.8 4,505,666 - MPMX20_04313 0.24 +1.1 4,505,668 + MPMX20_04313 0.24 +0.1 4,505,701 + MPMX20_04313 0.26 -0.6 4,505,701 + MPMX20_04313 0.26 -1.4 4,505,709 - MPMX20_04313 0.26 -2.8 4,505,709 - MPMX20_04313 0.26 -0.8 4,505,709 - MPMX20_04313 0.26 -2.7 4,505,709 - MPMX20_04313 0.26 -0.6 4,505,722 - MPMX20_04313 0.27 +2.2 4,505,722 - MPMX20_04313 0.27 -1.3 4,505,824 - MPMX20_04313 0.32 +1.5 4,506,062 - MPMX20_04313 0.44 -0.6 4,506,074 - MPMX20_04313 0.45 +2.3 4,506,145 - MPMX20_04313 0.48 -2.3
Or see this region's nucleotide sequence