Experiment: 0.1X LB plate, 1:1 coculture with Paenibacillus lautus 004-C1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04112 and MPMX20_04113 are separated by 38 nucleotides MPMX20_04113 and MPMX20_04114 overlap by 4 nucleotides MPMX20_04114 and MPMX20_04115 are separated by 227 nucleotides
MPMX20_04112: MPMX20_04112 - Phosphocarrier protein NPr, at 4,304,067 to 4,304,339
_04112
MPMX20_04113: MPMX20_04113 - Biosynthetic peptidoglycan transglycosylase, at 4,304,378 to 4,305,103
_04113
MPMX20_04114: MPMX20_04114 - Glyoxalase ElbB, at 4,305,100 to 4,305,756
_04114
MPMX20_04115: MPMX20_04115 - Aerobic respiration control sensor protein ArcB, at 4,305,984 to 4,308,317
_04115
Position (kb)
4305
4306 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6 at 4304.166 kb on + strand, within MPMX20_04112 at 4304.217 kb on - strand, within MPMX20_04112 at 4304.320 kb on - strand at 4304.320 kb on - strand at 4304.320 kb on - strand at 4304.355 kb on + strand at 4304.360 kb on + strand at 4304.360 kb on + strand at 4304.368 kb on - strand at 4304.368 kb on - strand at 4304.412 kb on + strand at 4304.465 kb on + strand, within MPMX20_04113 at 4304.471 kb on + strand, within MPMX20_04113 at 4304.473 kb on - strand, within MPMX20_04113 at 4304.481 kb on + strand, within MPMX20_04113 at 4304.694 kb on + strand, within MPMX20_04113 at 4304.713 kb on - strand, within MPMX20_04113 at 4304.837 kb on - strand, within MPMX20_04113 at 4304.891 kb on + strand, within MPMX20_04113 at 4304.891 kb on + strand, within MPMX20_04113 at 4304.899 kb on - strand, within MPMX20_04113 at 4304.906 kb on + strand, within MPMX20_04113 at 4304.909 kb on - strand, within MPMX20_04113 at 4304.909 kb on - strand, within MPMX20_04113 at 4304.910 kb on - strand, within MPMX20_04113 at 4305.024 kb on + strand, within MPMX20_04113 at 4305.024 kb on + strand, within MPMX20_04113 at 4305.032 kb on - strand at 4305.223 kb on + strand, within MPMX20_04114 at 4305.231 kb on - strand, within MPMX20_04114 at 4305.259 kb on - strand, within MPMX20_04114 at 4305.276 kb on - strand, within MPMX20_04114 at 4305.350 kb on - strand, within MPMX20_04114 at 4305.352 kb on + strand, within MPMX20_04114 at 4305.359 kb on - strand, within MPMX20_04114 at 4305.368 kb on - strand, within MPMX20_04114 at 4305.388 kb on - strand, within MPMX20_04114 at 4305.390 kb on + strand, within MPMX20_04114 at 4305.465 kb on + strand, within MPMX20_04114 at 4305.465 kb on + strand, within MPMX20_04114 at 4305.473 kb on - strand, within MPMX20_04114 at 4305.473 kb on - strand, within MPMX20_04114 at 4305.475 kb on + strand, within MPMX20_04114 at 4305.506 kb on - strand, within MPMX20_04114 at 4305.554 kb on + strand, within MPMX20_04114 at 4305.562 kb on - strand, within MPMX20_04114 at 4305.659 kb on + strand, within MPMX20_04114 at 4305.707 kb on - strand at 4305.725 kb on - strand at 4305.814 kb on + strand at 4305.814 kb on + strand at 4305.822 kb on + strand at 4305.822 kb on - strand at 4305.830 kb on - strand at 4305.830 kb on - strand at 4305.964 kb on - strand at 4306.002 kb on + strand at 4306.002 kb on + strand at 4306.010 kb on - strand at 4306.087 kb on + strand at 4306.099 kb on + strand at 4306.164 kb on - strand at 4306.277 kb on + strand, within MPMX20_04115 at 4306.329 kb on + strand, within MPMX20_04115 at 4306.337 kb on - strand, within MPMX20_04115 at 4306.347 kb on + strand, within MPMX20_04115 at 4306.373 kb on - strand, within MPMX20_04115 at 4306.395 kb on - strand, within MPMX20_04115 at 4306.410 kb on + strand, within MPMX20_04115 at 4306.410 kb on + strand, within MPMX20_04115 at 4306.619 kb on + strand, within MPMX20_04115 at 4306.627 kb on - strand, within MPMX20_04115 at 4306.627 kb on - strand, within MPMX20_04115 at 4306.658 kb on + strand, within MPMX20_04115 at 4306.693 kb on - strand, within MPMX20_04115
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Paenibacillus lautus 004-C1 remove 4,304,166 + MPMX20_04112 0.36 +1.7 4,304,217 - MPMX20_04112 0.55 -0.9 4,304,320 - +0.4 4,304,320 - -1.3 4,304,320 - +1.2 4,304,355 + -1.8 4,304,360 + +1.2 4,304,360 + -1.5 4,304,368 - +1.9 4,304,368 - +0.7 4,304,412 + +0.7 4,304,465 + MPMX20_04113 0.12 -0.3 4,304,471 + MPMX20_04113 0.13 +0.6 4,304,473 - MPMX20_04113 0.13 -0.0 4,304,481 + MPMX20_04113 0.14 -0.3 4,304,694 + MPMX20_04113 0.44 +0.5 4,304,713 - MPMX20_04113 0.46 -1.9 4,304,837 - MPMX20_04113 0.63 -0.1 4,304,891 + MPMX20_04113 0.71 -1.6 4,304,891 + MPMX20_04113 0.71 +0.4 4,304,899 - MPMX20_04113 0.72 -3.7 4,304,906 + MPMX20_04113 0.73 -0.3 4,304,909 - MPMX20_04113 0.73 -2.2 4,304,909 - MPMX20_04113 0.73 -1.0 4,304,910 - MPMX20_04113 0.73 -0.8 4,305,024 + MPMX20_04113 0.89 +1.0 4,305,024 + MPMX20_04113 0.89 +1.2 4,305,032 - -0.9 4,305,223 + MPMX20_04114 0.19 +0.7 4,305,231 - MPMX20_04114 0.20 -0.1 4,305,259 - MPMX20_04114 0.24 -0.4 4,305,276 - MPMX20_04114 0.27 -2.0 4,305,350 - MPMX20_04114 0.38 -2.9 4,305,352 + MPMX20_04114 0.38 -0.5 4,305,359 - MPMX20_04114 0.39 +0.1 4,305,368 - MPMX20_04114 0.41 -0.9 4,305,388 - MPMX20_04114 0.44 -1.1 4,305,390 + MPMX20_04114 0.44 +0.7 4,305,465 + MPMX20_04114 0.56 +1.7 4,305,465 + MPMX20_04114 0.56 -1.0 4,305,473 - MPMX20_04114 0.57 +0.7 4,305,473 - MPMX20_04114 0.57 -0.3 4,305,475 + MPMX20_04114 0.57 -3.1 4,305,506 - MPMX20_04114 0.62 -0.1 4,305,554 + MPMX20_04114 0.69 +1.4 4,305,562 - MPMX20_04114 0.70 -0.1 4,305,659 + MPMX20_04114 0.85 -1.9 4,305,707 - -1.4 4,305,725 - +0.9 4,305,814 + +1.0 4,305,814 + +1.2 4,305,822 + +6.2 4,305,822 - +1.7 4,305,830 - +4.5 4,305,830 - +5.1 4,305,964 - +5.9 4,306,002 + -1.9 4,306,002 + +0.4 4,306,010 - +1.9 4,306,087 + +0.7 4,306,099 + +1.9 4,306,164 - +2.2 4,306,277 + MPMX20_04115 0.13 +3.2 4,306,329 + MPMX20_04115 0.15 +0.1 4,306,337 - MPMX20_04115 0.15 -1.9 4,306,347 + MPMX20_04115 0.16 -2.9 4,306,373 - MPMX20_04115 0.17 +1.2 4,306,395 - MPMX20_04115 0.18 -1.5 4,306,410 + MPMX20_04115 0.18 +2.5 4,306,410 + MPMX20_04115 0.18 -1.3 4,306,619 + MPMX20_04115 0.27 -1.7 4,306,627 - MPMX20_04115 0.28 +1.2 4,306,627 - MPMX20_04115 0.28 +0.9 4,306,658 + MPMX20_04115 0.29 +2.2 4,306,693 - MPMX20_04115 0.30 +2.9
Or see this region's nucleotide sequence