Experiment: 0.1X LB plate, 1:1 coculture with Paenibacillus lautus 004-C1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04057 and MPMX20_04058 overlap by 21 nucleotides MPMX20_04058 and MPMX20_04059 are separated by 14 nucleotides MPMX20_04059 and MPMX20_04060 overlap by 14 nucleotides MPMX20_04060 and MPMX20_04061 overlap by 7 nucleotides
MPMX20_04057: MPMX20_04057 - Protein/nucleic acid deglycase 2, at 4,255,689 to 4,256,207
_04057
MPMX20_04058: MPMX20_04058 - hypothetical protein, at 4,256,187 to 4,256,621
_04058
MPMX20_04059: MPMX20_04059 - hypothetical protein, at 4,256,636 to 4,256,965
_04059
MPMX20_04060: MPMX20_04060 - hypothetical protein, at 4,256,952 to 4,257,455
_04060
MPMX20_04061: MPMX20_04061 - Ubiquinone biosynthesis accessory factor UbiJ, at 4,257,449 to 4,257,973
_04061
Position (kb)
4256
4257 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4255.707 kb on + strand at 4255.715 kb on - strand at 4255.815 kb on + strand, within MPMX20_04057 at 4255.830 kb on + strand, within MPMX20_04057 at 4255.830 kb on + strand, within MPMX20_04057 at 4255.943 kb on - strand, within MPMX20_04057 at 4255.952 kb on - strand, within MPMX20_04057 at 4256.123 kb on + strand, within MPMX20_04057 at 4256.229 kb on + strand at 4256.243 kb on - strand, within MPMX20_04058 at 4256.266 kb on - strand, within MPMX20_04058 at 4256.396 kb on + strand, within MPMX20_04058 at 4256.423 kb on - strand, within MPMX20_04058 at 4256.442 kb on - strand, within MPMX20_04058 at 4256.449 kb on + strand, within MPMX20_04058 at 4256.477 kb on - strand, within MPMX20_04058 at 4256.549 kb on - strand, within MPMX20_04058 at 4256.549 kb on - strand, within MPMX20_04058 at 4256.598 kb on + strand at 4256.607 kb on + strand at 4256.631 kb on + strand at 4256.631 kb on + strand at 4256.639 kb on - strand at 4256.639 kb on - strand at 4256.659 kb on - strand at 4256.702 kb on - strand, within MPMX20_04059 at 4256.725 kb on - strand, within MPMX20_04059 at 4256.781 kb on + strand, within MPMX20_04059 at 4256.852 kb on - strand, within MPMX20_04059 at 4256.925 kb on + strand, within MPMX20_04059 at 4256.925 kb on + strand, within MPMX20_04059 at 4256.933 kb on - strand at 4256.981 kb on + strand at 4256.981 kb on + strand at 4256.981 kb on + strand at 4257.169 kb on - strand, within MPMX20_04060 at 4257.170 kb on - strand, within MPMX20_04060 at 4257.252 kb on - strand, within MPMX20_04060 at 4257.254 kb on - strand, within MPMX20_04060 at 4257.259 kb on - strand, within MPMX20_04060 at 4257.297 kb on + strand, within MPMX20_04060 at 4257.297 kb on + strand, within MPMX20_04060 at 4257.297 kb on + strand, within MPMX20_04060 at 4257.366 kb on - strand, within MPMX20_04060 at 4257.376 kb on + strand, within MPMX20_04060 at 4257.418 kb on - strand at 4257.447 kb on + strand at 4257.494 kb on + strand at 4257.663 kb on - strand, within MPMX20_04061 at 4257.677 kb on + strand, within MPMX20_04061 at 4257.707 kb on + strand, within MPMX20_04061 at 4257.715 kb on - strand, within MPMX20_04061 at 4257.715 kb on - strand, within MPMX20_04061 at 4257.715 kb on - strand, within MPMX20_04061 at 4257.754 kb on + strand, within MPMX20_04061 at 4257.768 kb on - strand, within MPMX20_04061 at 4257.775 kb on + strand, within MPMX20_04061 at 4257.790 kb on + strand, within MPMX20_04061 at 4257.798 kb on - strand, within MPMX20_04061 at 4257.798 kb on - strand, within MPMX20_04061 at 4257.804 kb on - strand, within MPMX20_04061 at 4257.804 kb on - strand, within MPMX20_04061 at 4257.833 kb on + strand, within MPMX20_04061 at 4257.841 kb on - strand, within MPMX20_04061 at 4257.868 kb on - strand, within MPMX20_04061 at 4257.880 kb on - strand, within MPMX20_04061 at 4257.948 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Paenibacillus lautus 004-C1 remove 4,255,707 + -1.7 4,255,715 - -2.5 4,255,815 + MPMX20_04057 0.24 -2.0 4,255,830 + MPMX20_04057 0.27 -0.0 4,255,830 + MPMX20_04057 0.27 +0.8 4,255,943 - MPMX20_04057 0.49 -0.1 4,255,952 - MPMX20_04057 0.51 +0.5 4,256,123 + MPMX20_04057 0.84 +1.3 4,256,229 + +0.3 4,256,243 - MPMX20_04058 0.13 -0.0 4,256,266 - MPMX20_04058 0.18 +0.7 4,256,396 + MPMX20_04058 0.48 +1.9 4,256,423 - MPMX20_04058 0.54 +0.0 4,256,442 - MPMX20_04058 0.59 -0.3 4,256,449 + MPMX20_04058 0.60 +0.9 4,256,477 - MPMX20_04058 0.67 +0.9 4,256,549 - MPMX20_04058 0.83 -1.6 4,256,549 - MPMX20_04058 0.83 -0.3 4,256,598 + -0.6 4,256,607 + +1.7 4,256,631 + +1.1 4,256,631 + +0.7 4,256,639 - +0.1 4,256,639 - +1.1 4,256,659 - -0.5 4,256,702 - MPMX20_04059 0.20 -1.3 4,256,725 - MPMX20_04059 0.27 -0.7 4,256,781 + MPMX20_04059 0.44 -1.4 4,256,852 - MPMX20_04059 0.65 -1.2 4,256,925 + MPMX20_04059 0.88 +2.3 4,256,925 + MPMX20_04059 0.88 +0.3 4,256,933 - +0.6 4,256,981 + +0.7 4,256,981 + +1.4 4,256,981 + +0.5 4,257,169 - MPMX20_04060 0.43 +0.9 4,257,170 - MPMX20_04060 0.43 -1.3 4,257,252 - MPMX20_04060 0.60 -0.1 4,257,254 - MPMX20_04060 0.60 +1.7 4,257,259 - MPMX20_04060 0.61 +0.3 4,257,297 + MPMX20_04060 0.68 +0.8 4,257,297 + MPMX20_04060 0.68 -0.1 4,257,297 + MPMX20_04060 0.68 -0.4 4,257,366 - MPMX20_04060 0.82 +0.1 4,257,376 + MPMX20_04060 0.84 +3.2 4,257,418 - -0.9 4,257,447 + +1.6 4,257,494 + -1.1 4,257,663 - MPMX20_04061 0.41 -1.3 4,257,677 + MPMX20_04061 0.43 -1.5 4,257,707 + MPMX20_04061 0.49 +0.7 4,257,715 - MPMX20_04061 0.51 -1.3 4,257,715 - MPMX20_04061 0.51 +0.9 4,257,715 - MPMX20_04061 0.51 +1.3 4,257,754 + MPMX20_04061 0.58 -0.5 4,257,768 - MPMX20_04061 0.61 -0.6 4,257,775 + MPMX20_04061 0.62 +2.0 4,257,790 + MPMX20_04061 0.65 -1.7 4,257,798 - MPMX20_04061 0.66 -0.3 4,257,798 - MPMX20_04061 0.66 +0.0 4,257,804 - MPMX20_04061 0.68 -0.5 4,257,804 - MPMX20_04061 0.68 +0.7 4,257,833 + MPMX20_04061 0.73 +0.0 4,257,841 - MPMX20_04061 0.75 +0.9 4,257,868 - MPMX20_04061 0.80 +0.6 4,257,880 - MPMX20_04061 0.82 -1.2 4,257,948 - -0.4
Or see this region's nucleotide sequence