Experiment: 0.1X LB plate, 1:1 coculture with Paenibacillus lautus 004-C1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03977 and MPMX20_03978 are separated by 0 nucleotides MPMX20_03978 and MPMX20_03979 are separated by 146 nucleotides MPMX20_03979 and MPMX20_03980 overlap by 4 nucleotides
MPMX20_03977: MPMX20_03977 - hypothetical protein, at 4,171,178 to 4,172,347
_03977
MPMX20_03978: MPMX20_03978 - NADPH-dependent ferric-chelate reductase, at 4,172,348 to 4,173,112
_03978
MPMX20_03979: MPMX20_03979 - Transcriptional regulator YqjI, at 4,173,259 to 4,173,753
_03979
MPMX20_03980: MPMX20_03980 - hypothetical protein, at 4,173,750 to 4,175,309
_03980
Position (kb)
4172
4173
4174 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 4171.484 kb on - strand, within MPMX20_03977 at 4171.519 kb on + strand, within MPMX20_03977 at 4171.540 kb on + strand, within MPMX20_03977 at 4171.591 kb on + strand, within MPMX20_03977 at 4171.675 kb on - strand, within MPMX20_03977 at 4171.793 kb on + strand, within MPMX20_03977 at 4171.910 kb on - strand, within MPMX20_03977 at 4171.922 kb on + strand, within MPMX20_03977 at 4171.955 kb on - strand, within MPMX20_03977 at 4171.966 kb on - strand, within MPMX20_03977 at 4171.970 kb on + strand, within MPMX20_03977 at 4171.971 kb on + strand, within MPMX20_03977 at 4172.053 kb on + strand, within MPMX20_03977 at 4172.089 kb on + strand, within MPMX20_03977 at 4172.094 kb on + strand, within MPMX20_03977 at 4172.173 kb on + strand, within MPMX20_03977 at 4172.173 kb on + strand, within MPMX20_03977 at 4172.218 kb on + strand, within MPMX20_03977 at 4172.238 kb on - strand at 4172.309 kb on + strand at 4172.327 kb on + strand at 4172.335 kb on - strand at 4172.504 kb on - strand, within MPMX20_03978 at 4172.537 kb on - strand, within MPMX20_03978 at 4172.567 kb on + strand, within MPMX20_03978 at 4172.597 kb on - strand, within MPMX20_03978 at 4172.687 kb on + strand, within MPMX20_03978 at 4172.689 kb on - strand, within MPMX20_03978 at 4172.690 kb on - strand, within MPMX20_03978 at 4172.765 kb on - strand, within MPMX20_03978 at 4172.821 kb on + strand, within MPMX20_03978 at 4172.840 kb on + strand, within MPMX20_03978 at 4172.840 kb on + strand, within MPMX20_03978 at 4172.840 kb on + strand, within MPMX20_03978 at 4172.847 kb on + strand, within MPMX20_03978 at 4172.847 kb on + strand, within MPMX20_03978 at 4172.847 kb on + strand, within MPMX20_03978 at 4172.847 kb on + strand, within MPMX20_03978 at 4172.848 kb on - strand, within MPMX20_03978 at 4172.855 kb on - strand, within MPMX20_03978 at 4172.855 kb on - strand, within MPMX20_03978 at 4172.917 kb on + strand, within MPMX20_03978 at 4172.922 kb on - strand, within MPMX20_03978 at 4173.027 kb on + strand, within MPMX20_03978 at 4173.091 kb on - strand at 4173.094 kb on + strand at 4173.114 kb on + strand at 4173.116 kb on - strand at 4173.121 kb on - strand at 4173.372 kb on + strand, within MPMX20_03979 at 4173.382 kb on + strand, within MPMX20_03979 at 4173.410 kb on + strand, within MPMX20_03979 at 4173.416 kb on + strand, within MPMX20_03979 at 4173.424 kb on - strand, within MPMX20_03979 at 4173.424 kb on - strand, within MPMX20_03979 at 4173.453 kb on + strand, within MPMX20_03979 at 4173.454 kb on + strand, within MPMX20_03979 at 4173.461 kb on - strand, within MPMX20_03979 at 4173.462 kb on - strand, within MPMX20_03979 at 4173.525 kb on + strand, within MPMX20_03979 at 4173.525 kb on + strand, within MPMX20_03979 at 4173.593 kb on + strand, within MPMX20_03979 at 4173.639 kb on + strand, within MPMX20_03979 at 4173.647 kb on - strand, within MPMX20_03979 at 4173.647 kb on - strand, within MPMX20_03979 at 4173.649 kb on + strand, within MPMX20_03979 at 4173.700 kb on - strand, within MPMX20_03979 at 4173.710 kb on - strand at 4173.727 kb on + strand at 4173.727 kb on + strand at 4173.727 kb on + strand at 4173.727 kb on + strand at 4173.735 kb on - strand at 4173.747 kb on + strand at 4173.755 kb on - strand at 4173.756 kb on - strand at 4173.766 kb on - strand at 4173.801 kb on + strand at 4173.801 kb on - strand at 4173.851 kb on - strand at 4173.874 kb on - strand at 4173.926 kb on + strand, within MPMX20_03980 at 4173.926 kb on + strand, within MPMX20_03980 at 4173.926 kb on + strand, within MPMX20_03980 at 4173.934 kb on - strand, within MPMX20_03980 at 4173.934 kb on - strand, within MPMX20_03980 at 4173.944 kb on - strand, within MPMX20_03980 at 4173.974 kb on - strand, within MPMX20_03980 at 4173.994 kb on - strand, within MPMX20_03980 at 4174.022 kb on + strand, within MPMX20_03980 at 4174.022 kb on + strand, within MPMX20_03980 at 4174.022 kb on + strand, within MPMX20_03980 at 4174.022 kb on + strand, within MPMX20_03980 at 4174.030 kb on - strand, within MPMX20_03980 at 4174.035 kb on - strand, within MPMX20_03980 at 4174.088 kb on - strand, within MPMX20_03980 at 4174.090 kb on + strand, within MPMX20_03980 at 4174.103 kb on - strand, within MPMX20_03980
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Paenibacillus lautus 004-C1 remove 4,171,484 - MPMX20_03977 0.26 +1.4 4,171,519 + MPMX20_03977 0.29 -0.3 4,171,540 + MPMX20_03977 0.31 -1.2 4,171,591 + MPMX20_03977 0.35 -0.7 4,171,675 - MPMX20_03977 0.42 -1.2 4,171,793 + MPMX20_03977 0.53 -0.4 4,171,910 - MPMX20_03977 0.63 +1.0 4,171,922 + MPMX20_03977 0.64 -0.6 4,171,955 - MPMX20_03977 0.66 +0.7 4,171,966 - MPMX20_03977 0.67 -0.3 4,171,970 + MPMX20_03977 0.68 +0.9 4,171,971 + MPMX20_03977 0.68 -3.3 4,172,053 + MPMX20_03977 0.75 -2.7 4,172,089 + MPMX20_03977 0.78 +1.4 4,172,094 + MPMX20_03977 0.78 -0.9 4,172,173 + MPMX20_03977 0.85 -1.2 4,172,173 + MPMX20_03977 0.85 -0.6 4,172,218 + MPMX20_03977 0.89 +0.3 4,172,238 - -0.8 4,172,309 + -2.2 4,172,327 + +0.8 4,172,335 - -1.4 4,172,504 - MPMX20_03978 0.20 +0.6 4,172,537 - MPMX20_03978 0.25 -0.1 4,172,567 + MPMX20_03978 0.29 -0.3 4,172,597 - MPMX20_03978 0.33 +1.8 4,172,687 + MPMX20_03978 0.44 -0.7 4,172,689 - MPMX20_03978 0.45 -0.3 4,172,690 - MPMX20_03978 0.45 +0.3 4,172,765 - MPMX20_03978 0.55 +1.7 4,172,821 + MPMX20_03978 0.62 +0.8 4,172,840 + MPMX20_03978 0.64 -1.0 4,172,840 + MPMX20_03978 0.64 -0.2 4,172,840 + MPMX20_03978 0.64 -1.3 4,172,847 + MPMX20_03978 0.65 +0.3 4,172,847 + MPMX20_03978 0.65 -1.0 4,172,847 + MPMX20_03978 0.65 -0.5 4,172,847 + MPMX20_03978 0.65 +1.0 4,172,848 - MPMX20_03978 0.65 +0.1 4,172,855 - MPMX20_03978 0.66 -0.6 4,172,855 - MPMX20_03978 0.66 -1.8 4,172,917 + MPMX20_03978 0.74 +1.4 4,172,922 - MPMX20_03978 0.75 -0.4 4,173,027 + MPMX20_03978 0.89 -0.3 4,173,091 - -1.3 4,173,094 + -0.2 4,173,114 + -0.0 4,173,116 - +0.3 4,173,121 - -1.1 4,173,372 + MPMX20_03979 0.23 +2.3 4,173,382 + MPMX20_03979 0.25 -2.7 4,173,410 + MPMX20_03979 0.31 -0.5 4,173,416 + MPMX20_03979 0.32 -1.5 4,173,424 - MPMX20_03979 0.33 +4.0 4,173,424 - MPMX20_03979 0.33 +1.0 4,173,453 + MPMX20_03979 0.39 +0.7 4,173,454 + MPMX20_03979 0.39 +0.1 4,173,461 - MPMX20_03979 0.41 +0.6 4,173,462 - MPMX20_03979 0.41 -1.4 4,173,525 + MPMX20_03979 0.54 -0.0 4,173,525 + MPMX20_03979 0.54 +1.3 4,173,593 + MPMX20_03979 0.67 -2.3 4,173,639 + MPMX20_03979 0.77 -2.0 4,173,647 - MPMX20_03979 0.78 +0.1 4,173,647 - MPMX20_03979 0.78 +1.7 4,173,649 + MPMX20_03979 0.79 +2.9 4,173,700 - MPMX20_03979 0.89 -1.7 4,173,710 - +0.3 4,173,727 + +0.3 4,173,727 + -0.6 4,173,727 + -1.3 4,173,727 + +2.3 4,173,735 - -0.9 4,173,747 + -1.1 4,173,755 - -0.5 4,173,756 - -1.0 4,173,766 - +0.2 4,173,801 + +0.5 4,173,801 - +0.1 4,173,851 - -0.3 4,173,874 - -0.6 4,173,926 + MPMX20_03980 0.11 -1.8 4,173,926 + MPMX20_03980 0.11 +0.4 4,173,926 + MPMX20_03980 0.11 -0.4 4,173,934 - MPMX20_03980 0.12 -0.1 4,173,934 - MPMX20_03980 0.12 +0.4 4,173,944 - MPMX20_03980 0.12 +0.3 4,173,974 - MPMX20_03980 0.14 +1.1 4,173,994 - MPMX20_03980 0.16 +0.4 4,174,022 + MPMX20_03980 0.17 -1.8 4,174,022 + MPMX20_03980 0.17 +0.4 4,174,022 + MPMX20_03980 0.17 +0.6 4,174,022 + MPMX20_03980 0.17 -0.2 4,174,030 - MPMX20_03980 0.18 +0.2 4,174,035 - MPMX20_03980 0.18 +0.8 4,174,088 - MPMX20_03980 0.22 -0.5 4,174,090 + MPMX20_03980 0.22 +0.2 4,174,103 - MPMX20_03980 0.23 -0.3
Or see this region's nucleotide sequence