Experiment: 0.1X LB plate, 1:1 coculture with Paenibacillus lautus 004-C1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03674 and MPMX20_03675 overlap by 10 nucleotides MPMX20_03675 and MPMX20_03676 are separated by 76 nucleotides MPMX20_03676 and MPMX20_03677 are separated by 209 nucleotides MPMX20_03677 and MPMX20_03678 are separated by 44 nucleotides MPMX20_03678 and MPMX20_03679 are separated by 44 nucleotides MPMX20_03679 and MPMX20_03680 are separated by 88 nucleotides
MPMX20_03674: MPMX20_03674 - Sulfur acceptor protein CsdE, at 3,869,142 to 3,869,588
_03674
MPMX20_03675: MPMX20_03675 - tRNA threonylcarbamoyladenosine dehydratase, at 3,869,579 to 3,870,385
_03675
MPMX20_03676: MPMX20_03676 - Membrane-bound lytic murein transglycosylase A, at 3,870,462 to 3,871,559
_03676
MPMX20_03677: MPMX20_03677 - tRNA-Met, at 3,871,769 to 3,871,845
_03677
MPMX20_03678: MPMX20_03678 - tRNA-Met, at 3,871,890 to 3,871,966
_03678
MPMX20_03679: MPMX20_03679 - tRNA-Met, at 3,872,011 to 3,872,087
_03679
MPMX20_03680: MPMX20_03680 - N-acetylmuramoyl-L-alanine amidase AmiC, at 3,872,176 to 3,873,429
_03680
Position (kb)
3870
3871
3872 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3869.510 kb on + strand, within MPMX20_03674 at 3869.510 kb on + strand, within MPMX20_03674 at 3869.527 kb on + strand, within MPMX20_03674 at 3869.564 kb on - strand at 3869.595 kb on + strand at 3869.941 kb on + strand, within MPMX20_03675 at 3870.017 kb on + strand, within MPMX20_03675 at 3870.017 kb on + strand, within MPMX20_03675 at 3870.017 kb on + strand, within MPMX20_03675 at 3870.035 kb on - strand, within MPMX20_03675 at 3870.076 kb on - strand, within MPMX20_03675 at 3870.129 kb on + strand, within MPMX20_03675 at 3870.147 kb on - strand, within MPMX20_03675 at 3870.157 kb on + strand, within MPMX20_03675 at 3870.157 kb on + strand, within MPMX20_03675 at 3870.260 kb on - strand, within MPMX20_03675 at 3870.287 kb on + strand, within MPMX20_03675 at 3870.339 kb on - strand at 3870.376 kb on - strand at 3870.391 kb on - strand at 3870.405 kb on - strand at 3870.441 kb on + strand at 3870.446 kb on + strand at 3870.499 kb on - strand at 3870.504 kb on - strand at 3870.524 kb on + strand at 3870.532 kb on - strand at 3870.597 kb on - strand, within MPMX20_03676 at 3870.597 kb on - strand, within MPMX20_03676 at 3870.663 kb on + strand, within MPMX20_03676 at 3870.679 kb on + strand, within MPMX20_03676 at 3870.717 kb on + strand, within MPMX20_03676 at 3870.773 kb on + strand, within MPMX20_03676 at 3870.831 kb on + strand, within MPMX20_03676 at 3870.848 kb on + strand, within MPMX20_03676 at 3870.920 kb on - strand, within MPMX20_03676 at 3870.939 kb on + strand, within MPMX20_03676 at 3870.972 kb on + strand, within MPMX20_03676 at 3870.980 kb on - strand, within MPMX20_03676 at 3870.980 kb on - strand, within MPMX20_03676 at 3871.011 kb on + strand, within MPMX20_03676 at 3871.019 kb on - strand, within MPMX20_03676 at 3871.079 kb on + strand, within MPMX20_03676 at 3871.117 kb on - strand, within MPMX20_03676 at 3871.176 kb on + strand, within MPMX20_03676 at 3871.277 kb on + strand, within MPMX20_03676 at 3871.302 kb on + strand, within MPMX20_03676 at 3871.302 kb on + strand, within MPMX20_03676 at 3871.302 kb on + strand, within MPMX20_03676 at 3871.310 kb on - strand, within MPMX20_03676 at 3871.310 kb on - strand, within MPMX20_03676 at 3871.310 kb on - strand, within MPMX20_03676 at 3871.310 kb on - strand, within MPMX20_03676 at 3871.401 kb on - strand, within MPMX20_03676 at 3871.414 kb on + strand, within MPMX20_03676 at 3871.441 kb on + strand, within MPMX20_03676 at 3871.467 kb on - strand at 3871.487 kb on + strand at 3871.495 kb on - strand at 3871.495 kb on - strand at 3871.539 kb on - strand at 3871.640 kb on - strand at 3871.703 kb on + strand at 3871.943 kb on + strand, within MPMX20_03678 at 3872.140 kb on + strand at 3872.156 kb on + strand at 3872.178 kb on + strand at 3872.181 kb on - strand at 3872.183 kb on + strand at 3872.186 kb on - strand at 3872.186 kb on - strand at 3872.283 kb on + strand at 3872.293 kb on - strand at 3872.317 kb on - strand, within MPMX20_03680 at 3872.341 kb on + strand, within MPMX20_03680 at 3872.347 kb on - strand, within MPMX20_03680 at 3872.349 kb on + strand, within MPMX20_03680 at 3872.372 kb on - strand, within MPMX20_03680 at 3872.372 kb on - strand, within MPMX20_03680 at 3872.394 kb on - strand, within MPMX20_03680 at 3872.427 kb on + strand, within MPMX20_03680 at 3872.441 kb on + strand, within MPMX20_03680 at 3872.506 kb on - strand, within MPMX20_03680 at 3872.520 kb on + strand, within MPMX20_03680 at 3872.520 kb on + strand, within MPMX20_03680 at 3872.520 kb on + strand, within MPMX20_03680 at 3872.528 kb on - strand, within MPMX20_03680 at 3872.528 kb on - strand, within MPMX20_03680 at 3872.528 kb on - strand, within MPMX20_03680
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Paenibacillus lautus 004-C1 remove 3,869,510 + MPMX20_03674 0.82 +1.4 3,869,510 + MPMX20_03674 0.82 +0.3 3,869,527 + MPMX20_03674 0.86 -1.4 3,869,564 - -0.2 3,869,595 + -1.5 3,869,941 + MPMX20_03675 0.45 -0.1 3,870,017 + MPMX20_03675 0.54 +1.5 3,870,017 + MPMX20_03675 0.54 +0.7 3,870,017 + MPMX20_03675 0.54 -1.1 3,870,035 - MPMX20_03675 0.57 -0.9 3,870,076 - MPMX20_03675 0.62 -2.0 3,870,129 + MPMX20_03675 0.68 +1.3 3,870,147 - MPMX20_03675 0.70 -1.3 3,870,157 + MPMX20_03675 0.72 -0.1 3,870,157 + MPMX20_03675 0.72 -0.3 3,870,260 - MPMX20_03675 0.84 -0.7 3,870,287 + MPMX20_03675 0.88 -0.4 3,870,339 - -2.8 3,870,376 - +2.3 3,870,391 - +0.0 3,870,405 - +1.1 3,870,441 + +0.4 3,870,446 + +2.3 3,870,499 - -0.1 3,870,504 - -1.8 3,870,524 + -1.1 3,870,532 - -1.4 3,870,597 - MPMX20_03676 0.12 +0.7 3,870,597 - MPMX20_03676 0.12 -0.1 3,870,663 + MPMX20_03676 0.18 -0.6 3,870,679 + MPMX20_03676 0.20 +0.5 3,870,717 + MPMX20_03676 0.23 +0.3 3,870,773 + MPMX20_03676 0.28 +0.7 3,870,831 + MPMX20_03676 0.34 -1.5 3,870,848 + MPMX20_03676 0.35 -1.1 3,870,920 - MPMX20_03676 0.42 -1.1 3,870,939 + MPMX20_03676 0.43 -1.5 3,870,972 + MPMX20_03676 0.46 +0.1 3,870,980 - MPMX20_03676 0.47 -1.3 3,870,980 - MPMX20_03676 0.47 -1.2 3,871,011 + MPMX20_03676 0.50 -0.6 3,871,019 - MPMX20_03676 0.51 +2.3 3,871,079 + MPMX20_03676 0.56 -0.1 3,871,117 - MPMX20_03676 0.60 +0.3 3,871,176 + MPMX20_03676 0.65 -0.5 3,871,277 + MPMX20_03676 0.74 +0.4 3,871,302 + MPMX20_03676 0.77 -0.9 3,871,302 + MPMX20_03676 0.77 -0.5 3,871,302 + MPMX20_03676 0.77 -2.1 3,871,310 - MPMX20_03676 0.77 +0.4 3,871,310 - MPMX20_03676 0.77 -0.6 3,871,310 - MPMX20_03676 0.77 +0.2 3,871,310 - MPMX20_03676 0.77 -1.2 3,871,401 - MPMX20_03676 0.86 -0.5 3,871,414 + MPMX20_03676 0.87 -0.1 3,871,441 + MPMX20_03676 0.89 -2.6 3,871,467 - -2.1 3,871,487 + +0.7 3,871,495 - +0.5 3,871,495 - -0.1 3,871,539 - -0.1 3,871,640 - +0.3 3,871,703 + +1.1 3,871,943 + MPMX20_03678 0.69 +0.1 3,872,140 + -0.1 3,872,156 + -0.1 3,872,178 + -1.9 3,872,181 - -2.1 3,872,183 + -1.4 3,872,186 - -1.0 3,872,186 - -1.6 3,872,283 + -0.5 3,872,293 - +1.0 3,872,317 - MPMX20_03680 0.11 -1.4 3,872,341 + MPMX20_03680 0.13 +0.3 3,872,347 - MPMX20_03680 0.14 -1.1 3,872,349 + MPMX20_03680 0.14 -1.4 3,872,372 - MPMX20_03680 0.16 -1.4 3,872,372 - MPMX20_03680 0.16 +0.9 3,872,394 - MPMX20_03680 0.17 +0.5 3,872,427 + MPMX20_03680 0.20 +0.8 3,872,441 + MPMX20_03680 0.21 -2.9 3,872,506 - MPMX20_03680 0.26 -1.2 3,872,520 + MPMX20_03680 0.27 +0.4 3,872,520 + MPMX20_03680 0.27 -0.3 3,872,520 + MPMX20_03680 0.27 -0.8 3,872,528 - MPMX20_03680 0.28 -3.5 3,872,528 - MPMX20_03680 0.28 -1.7 3,872,528 - MPMX20_03680 0.28 -2.1
Or see this region's nucleotide sequence