Experiment: 0.1X LB plate, 1:1 coculture with Paenibacillus lautus 004-C1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03423 and MPMX20_03424 overlap by 4 nucleotides MPMX20_03424 and MPMX20_03425 are separated by 1 nucleotides MPMX20_03425 and MPMX20_03426 are separated by 579 nucleotides
MPMX20_03423: MPMX20_03423 - Transcriptional regulatory protein QseF, at 3,607,948 to 3,609,285
_03423
MPMX20_03424: MPMX20_03424 - Quorum-sensing regulator protein G, at 3,609,282 to 3,610,031
_03424
MPMX20_03425: MPMX20_03425 - Sensor histidine kinase QseE, at 3,610,033 to 3,611,415
_03425
MPMX20_03426: MPMX20_03426 - Phosphoribosylformylglycinamidine synthase, at 3,611,995 to 3,615,882
_03426
Position (kb)
3610
3611
3612 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3609.190 kb on + strand at 3609.195 kb on + strand at 3609.198 kb on - strand at 3609.234 kb on + strand at 3609.277 kb on - strand at 3609.296 kb on - strand at 3609.304 kb on - strand at 3609.346 kb on - strand at 3609.450 kb on + strand, within MPMX20_03424 at 3609.453 kb on - strand, within MPMX20_03424 at 3609.546 kb on + strand, within MPMX20_03424 at 3609.559 kb on + strand, within MPMX20_03424 at 3609.559 kb on + strand, within MPMX20_03424 at 3609.567 kb on - strand, within MPMX20_03424 at 3609.567 kb on - strand, within MPMX20_03424 at 3609.783 kb on - strand, within MPMX20_03424 at 3609.903 kb on + strand, within MPMX20_03424 at 3609.914 kb on + strand, within MPMX20_03424 at 3609.932 kb on + strand, within MPMX20_03424 at 3609.940 kb on - strand, within MPMX20_03424 at 3609.950 kb on - strand, within MPMX20_03424 at 3610.004 kb on + strand at 3610.012 kb on - strand at 3610.067 kb on - strand at 3610.067 kb on - strand at 3610.067 kb on - strand at 3610.067 kb on - strand at 3610.067 kb on - strand at 3610.072 kb on + strand at 3610.120 kb on - strand at 3610.144 kb on + strand at 3610.314 kb on + strand, within MPMX20_03425 at 3610.317 kb on + strand, within MPMX20_03425 at 3610.330 kb on - strand, within MPMX20_03425 at 3610.363 kb on + strand, within MPMX20_03425 at 3610.369 kb on - strand, within MPMX20_03425 at 3610.439 kb on + strand, within MPMX20_03425 at 3610.444 kb on + strand, within MPMX20_03425 at 3610.466 kb on + strand, within MPMX20_03425 at 3610.529 kb on + strand, within MPMX20_03425 at 3610.539 kb on - strand, within MPMX20_03425 at 3610.681 kb on - strand, within MPMX20_03425 at 3610.726 kb on - strand, within MPMX20_03425 at 3610.761 kb on + strand, within MPMX20_03425 at 3610.761 kb on + strand, within MPMX20_03425 at 3610.769 kb on - strand, within MPMX20_03425 at 3610.769 kb on - strand, within MPMX20_03425 at 3610.828 kb on - strand, within MPMX20_03425 at 3610.863 kb on + strand, within MPMX20_03425 at 3610.885 kb on - strand, within MPMX20_03425 at 3610.893 kb on - strand, within MPMX20_03425 at 3610.920 kb on - strand, within MPMX20_03425 at 3610.971 kb on + strand, within MPMX20_03425 at 3610.979 kb on - strand, within MPMX20_03425 at 3610.995 kb on - strand, within MPMX20_03425 at 3611.014 kb on - strand, within MPMX20_03425 at 3611.077 kb on + strand, within MPMX20_03425 at 3611.162 kb on - strand, within MPMX20_03425 at 3611.169 kb on + strand, within MPMX20_03425 at 3611.270 kb on + strand, within MPMX20_03425 at 3611.270 kb on + strand, within MPMX20_03425 at 3611.320 kb on + strand at 3611.381 kb on + strand at 3611.419 kb on + strand at 3611.489 kb on - strand at 3611.527 kb on - strand at 3611.527 kb on - strand at 3611.616 kb on - strand at 3612.065 kb on + strand at 3612.066 kb on + strand at 3612.091 kb on - strand at 3612.147 kb on - strand at 3612.169 kb on + strand at 3612.256 kb on + strand at 3612.261 kb on - strand at 3612.269 kb on - strand at 3612.352 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Paenibacillus lautus 004-C1 remove 3,609,190 + -2.1 3,609,195 + +1.7 3,609,198 - +0.1 3,609,234 + -0.0 3,609,277 - -1.0 3,609,296 - -0.4 3,609,304 - +0.7 3,609,346 - +0.7 3,609,450 + MPMX20_03424 0.22 -0.9 3,609,453 - MPMX20_03424 0.23 +0.8 3,609,546 + MPMX20_03424 0.35 +0.7 3,609,559 + MPMX20_03424 0.37 +0.3 3,609,559 + MPMX20_03424 0.37 -0.0 3,609,567 - MPMX20_03424 0.38 +0.5 3,609,567 - MPMX20_03424 0.38 +0.3 3,609,783 - MPMX20_03424 0.67 -2.2 3,609,903 + MPMX20_03424 0.83 -0.1 3,609,914 + MPMX20_03424 0.84 +0.6 3,609,932 + MPMX20_03424 0.87 +0.6 3,609,940 - MPMX20_03424 0.88 -0.0 3,609,950 - MPMX20_03424 0.89 -0.5 3,610,004 + -0.5 3,610,012 - +0.9 3,610,067 - +0.1 3,610,067 - -0.6 3,610,067 - +1.6 3,610,067 - +1.9 3,610,067 - -1.5 3,610,072 + +0.3 3,610,120 - +0.9 3,610,144 + -0.1 3,610,314 + MPMX20_03425 0.20 +0.7 3,610,317 + MPMX20_03425 0.21 -0.4 3,610,330 - MPMX20_03425 0.21 -1.1 3,610,363 + MPMX20_03425 0.24 +2.3 3,610,369 - MPMX20_03425 0.24 -2.0 3,610,439 + MPMX20_03425 0.29 +0.6 3,610,444 + MPMX20_03425 0.30 +0.4 3,610,466 + MPMX20_03425 0.31 -0.5 3,610,529 + MPMX20_03425 0.36 -1.7 3,610,539 - MPMX20_03425 0.37 +0.8 3,610,681 - MPMX20_03425 0.47 +1.6 3,610,726 - MPMX20_03425 0.50 +0.3 3,610,761 + MPMX20_03425 0.53 +0.9 3,610,761 + MPMX20_03425 0.53 -1.0 3,610,769 - MPMX20_03425 0.53 +0.8 3,610,769 - MPMX20_03425 0.53 -0.8 3,610,828 - MPMX20_03425 0.57 +1.5 3,610,863 + MPMX20_03425 0.60 +1.7 3,610,885 - MPMX20_03425 0.62 +1.1 3,610,893 - MPMX20_03425 0.62 -1.6 3,610,920 - MPMX20_03425 0.64 +4.6 3,610,971 + MPMX20_03425 0.68 +0.5 3,610,979 - MPMX20_03425 0.68 -2.2 3,610,995 - MPMX20_03425 0.70 -0.9 3,611,014 - MPMX20_03425 0.71 +0.4 3,611,077 + MPMX20_03425 0.75 -1.5 3,611,162 - MPMX20_03425 0.82 +1.1 3,611,169 + MPMX20_03425 0.82 -3.2 3,611,270 + MPMX20_03425 0.89 -0.1 3,611,270 + MPMX20_03425 0.89 +0.8 3,611,320 + -1.2 3,611,381 + -1.4 3,611,419 + -0.5 3,611,489 - +0.3 3,611,527 - -2.6 3,611,527 - -0.3 3,611,616 - -2.5 3,612,065 + -0.9 3,612,066 + -0.5 3,612,091 - +1.0 3,612,147 - +1.1 3,612,169 + +1.0 3,612,256 + -2.1 3,612,261 - -1.9 3,612,269 - -2.6 3,612,352 + +1.3
Or see this region's nucleotide sequence