Experiment: 0.1X LB plate, 1:1 coculture with Paenibacillus lautus 004-C1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03286 and MPMX20_03287 are separated by 350 nucleotides MPMX20_03287 and MPMX20_03288 are separated by 44 nucleotides
MPMX20_03286: MPMX20_03286 - Divalent metal cation transporter MntH, at 3,458,532 to 3,459,770
_03286
MPMX20_03287: MPMX20_03287 - Nucleoside permease NupC, at 3,460,121 to 3,461,308
_03287
MPMX20_03288: MPMX20_03288 - putative cyclic di-GMP phosphodiesterase PdeA, at 3,461,353 to 3,463,575
_03288
Position (kb)
3460
3461
3462 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3459.159 kb on - strand, within MPMX20_03286 at 3459.193 kb on + strand, within MPMX20_03286 at 3459.193 kb on - strand, within MPMX20_03286 at 3459.193 kb on - strand, within MPMX20_03286 at 3459.273 kb on - strand, within MPMX20_03286 at 3459.273 kb on - strand, within MPMX20_03286 at 3459.364 kb on + strand, within MPMX20_03286 at 3459.379 kb on + strand, within MPMX20_03286 at 3459.387 kb on - strand, within MPMX20_03286 at 3459.397 kb on - strand, within MPMX20_03286 at 3459.486 kb on - strand, within MPMX20_03286 at 3459.550 kb on - strand, within MPMX20_03286 at 3459.574 kb on - strand, within MPMX20_03286 at 3459.590 kb on + strand, within MPMX20_03286 at 3459.607 kb on + strand, within MPMX20_03286 at 3459.608 kb on + strand, within MPMX20_03286 at 3459.615 kb on - strand, within MPMX20_03286 at 3459.700 kb on + strand at 3459.733 kb on + strand at 3459.741 kb on - strand at 3459.742 kb on + strand at 3459.742 kb on + strand at 3459.744 kb on + strand at 3459.750 kb on - strand at 3459.752 kb on - strand at 3459.801 kb on + strand at 3459.801 kb on + strand at 3459.809 kb on - strand at 3459.877 kb on - strand at 3460.034 kb on - strand at 3460.047 kb on - strand at 3460.126 kb on - strand at 3460.126 kb on - strand at 3460.126 kb on - strand at 3460.126 kb on - strand at 3460.158 kb on + strand at 3460.188 kb on - strand at 3460.193 kb on - strand at 3460.297 kb on - strand, within MPMX20_03287 at 3460.329 kb on - strand, within MPMX20_03287 at 3460.376 kb on + strand, within MPMX20_03287 at 3460.384 kb on - strand, within MPMX20_03287 at 3460.430 kb on - strand, within MPMX20_03287 at 3460.430 kb on - strand, within MPMX20_03287 at 3460.440 kb on - strand, within MPMX20_03287 at 3460.457 kb on - strand, within MPMX20_03287 at 3460.503 kb on - strand, within MPMX20_03287 at 3460.545 kb on + strand, within MPMX20_03287 at 3460.550 kb on - strand, within MPMX20_03287 at 3460.570 kb on + strand, within MPMX20_03287 at 3460.621 kb on + strand, within MPMX20_03287 at 3460.679 kb on - strand, within MPMX20_03287 at 3460.715 kb on + strand, within MPMX20_03287 at 3460.723 kb on - strand, within MPMX20_03287 at 3460.723 kb on - strand, within MPMX20_03287 at 3460.726 kb on + strand, within MPMX20_03287 at 3460.734 kb on - strand, within MPMX20_03287 at 3460.761 kb on - strand, within MPMX20_03287 at 3460.775 kb on - strand, within MPMX20_03287 at 3460.814 kb on + strand, within MPMX20_03287 at 3460.822 kb on - strand, within MPMX20_03287 at 3460.822 kb on - strand, within MPMX20_03287 at 3460.822 kb on - strand, within MPMX20_03287 at 3460.857 kb on + strand, within MPMX20_03287 at 3460.924 kb on - strand, within MPMX20_03287 at 3460.948 kb on - strand, within MPMX20_03287 at 3460.996 kb on + strand, within MPMX20_03287 at 3461.004 kb on - strand, within MPMX20_03287 at 3461.037 kb on + strand, within MPMX20_03287 at 3461.132 kb on + strand, within MPMX20_03287 at 3461.154 kb on - strand, within MPMX20_03287 at 3461.169 kb on - strand, within MPMX20_03287 at 3461.218 kb on - strand at 3461.218 kb on - strand at 3461.218 kb on - strand at 3461.233 kb on - strand at 3461.248 kb on + strand at 3461.256 kb on + strand at 3461.256 kb on + strand at 3461.256 kb on + strand at 3461.256 kb on + strand at 3461.256 kb on + strand at 3461.256 kb on + strand at 3461.256 kb on + strand at 3461.264 kb on - strand at 3461.264 kb on - strand at 3461.266 kb on + strand at 3461.266 kb on + strand at 3461.311 kb on - strand at 3461.414 kb on + strand at 3461.415 kb on - strand at 3461.450 kb on - strand at 3461.450 kb on - strand at 3461.480 kb on + strand at 3461.498 kb on - strand at 3461.591 kb on + strand, within MPMX20_03288 at 3461.591 kb on + strand, within MPMX20_03288 at 3461.591 kb on + strand, within MPMX20_03288 at 3461.591 kb on + strand, within MPMX20_03288 at 3461.593 kb on + strand, within MPMX20_03288 at 3461.593 kb on + strand, within MPMX20_03288 at 3461.599 kb on - strand, within MPMX20_03288 at 3461.599 kb on - strand, within MPMX20_03288 at 3461.599 kb on - strand, within MPMX20_03288 at 3461.601 kb on - strand, within MPMX20_03288 at 3461.601 kb on - strand, within MPMX20_03288 at 3461.712 kb on - strand, within MPMX20_03288 at 3461.748 kb on + strand, within MPMX20_03288 at 3461.755 kb on - strand, within MPMX20_03288 at 3461.781 kb on - strand, within MPMX20_03288 at 3461.803 kb on + strand, within MPMX20_03288 at 3461.921 kb on - strand, within MPMX20_03288 at 3461.934 kb on + strand, within MPMX20_03288 at 3461.934 kb on + strand, within MPMX20_03288 at 3461.936 kb on + strand, within MPMX20_03288 at 3461.969 kb on + strand, within MPMX20_03288 at 3462.043 kb on - strand, within MPMX20_03288 at 3462.079 kb on + strand, within MPMX20_03288 at 3462.079 kb on + strand, within MPMX20_03288 at 3462.122 kb on - strand, within MPMX20_03288 at 3462.135 kb on - strand, within MPMX20_03288 at 3462.136 kb on - strand, within MPMX20_03288 at 3462.141 kb on + strand, within MPMX20_03288 at 3462.160 kb on - strand, within MPMX20_03288 at 3462.160 kb on - strand, within MPMX20_03288 at 3462.173 kb on + strand, within MPMX20_03288 at 3462.204 kb on - strand, within MPMX20_03288 at 3462.204 kb on - strand, within MPMX20_03288 at 3462.252 kb on + strand, within MPMX20_03288 at 3462.273 kb on + strand, within MPMX20_03288 at 3462.281 kb on - strand, within MPMX20_03288
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Paenibacillus lautus 004-C1 remove 3,459,159 - MPMX20_03286 0.51 +1.1 3,459,193 + MPMX20_03286 0.53 -1.0 3,459,193 - MPMX20_03286 0.53 -0.5 3,459,193 - MPMX20_03286 0.53 +0.0 3,459,273 - MPMX20_03286 0.60 +1.1 3,459,273 - MPMX20_03286 0.60 +2.4 3,459,364 + MPMX20_03286 0.67 +0.0 3,459,379 + MPMX20_03286 0.68 -0.6 3,459,387 - MPMX20_03286 0.69 -0.5 3,459,397 - MPMX20_03286 0.70 -1.3 3,459,486 - MPMX20_03286 0.77 -1.3 3,459,550 - MPMX20_03286 0.82 -0.6 3,459,574 - MPMX20_03286 0.84 +0.9 3,459,590 + MPMX20_03286 0.85 +0.1 3,459,607 + MPMX20_03286 0.87 -0.2 3,459,608 + MPMX20_03286 0.87 -0.7 3,459,615 - MPMX20_03286 0.87 -0.0 3,459,700 + -1.9 3,459,733 + +1.8 3,459,741 - +0.9 3,459,742 + +1.4 3,459,742 + +1.2 3,459,744 + -1.1 3,459,750 - +0.1 3,459,752 - -0.6 3,459,801 + +0.6 3,459,801 + +0.5 3,459,809 - -1.9 3,459,877 - -1.9 3,460,034 - -0.9 3,460,047 - -0.6 3,460,126 - +0.9 3,460,126 - +0.4 3,460,126 - +1.6 3,460,126 - +1.5 3,460,158 + +2.1 3,460,188 - -1.0 3,460,193 - +1.1 3,460,297 - MPMX20_03287 0.15 +0.5 3,460,329 - MPMX20_03287 0.18 -0.5 3,460,376 + MPMX20_03287 0.21 -1.6 3,460,384 - MPMX20_03287 0.22 -0.5 3,460,430 - MPMX20_03287 0.26 +0.3 3,460,430 - MPMX20_03287 0.26 +1.5 3,460,440 - MPMX20_03287 0.27 +3.3 3,460,457 - MPMX20_03287 0.28 -0.4 3,460,503 - MPMX20_03287 0.32 +0.4 3,460,545 + MPMX20_03287 0.36 -2.0 3,460,550 - MPMX20_03287 0.36 +1.3 3,460,570 + MPMX20_03287 0.38 +1.0 3,460,621 + MPMX20_03287 0.42 +1.3 3,460,679 - MPMX20_03287 0.47 -1.4 3,460,715 + MPMX20_03287 0.50 +1.9 3,460,723 - MPMX20_03287 0.51 -1.5 3,460,723 - MPMX20_03287 0.51 +0.6 3,460,726 + MPMX20_03287 0.51 -1.5 3,460,734 - MPMX20_03287 0.52 -0.7 3,460,761 - MPMX20_03287 0.54 +0.0 3,460,775 - MPMX20_03287 0.55 -1.2 3,460,814 + MPMX20_03287 0.58 -3.2 3,460,822 - MPMX20_03287 0.59 -1.2 3,460,822 - MPMX20_03287 0.59 -0.8 3,460,822 - MPMX20_03287 0.59 -0.2 3,460,857 + MPMX20_03287 0.62 -0.5 3,460,924 - MPMX20_03287 0.68 -0.6 3,460,948 - MPMX20_03287 0.70 -0.5 3,460,996 + MPMX20_03287 0.74 +0.4 3,461,004 - MPMX20_03287 0.74 -0.8 3,461,037 + MPMX20_03287 0.77 -3.0 3,461,132 + MPMX20_03287 0.85 -2.1 3,461,154 - MPMX20_03287 0.87 -2.6 3,461,169 - MPMX20_03287 0.88 +1.6 3,461,218 - -0.2 3,461,218 - +1.1 3,461,218 - -0.1 3,461,233 - +1.2 3,461,248 + -2.0 3,461,256 + -0.5 3,461,256 + +0.3 3,461,256 + -0.7 3,461,256 + -0.5 3,461,256 + +0.6 3,461,256 + -0.1 3,461,256 + -2.4 3,461,264 - -3.1 3,461,264 - +2.7 3,461,266 + -2.6 3,461,266 + +0.8 3,461,311 - +1.8 3,461,414 + +0.2 3,461,415 - +1.2 3,461,450 - +1.2 3,461,450 - -1.0 3,461,480 + -0.4 3,461,498 - -1.3 3,461,591 + MPMX20_03288 0.11 +0.9 3,461,591 + MPMX20_03288 0.11 -0.1 3,461,591 + MPMX20_03288 0.11 -0.4 3,461,591 + MPMX20_03288 0.11 +0.0 3,461,593 + MPMX20_03288 0.11 +0.7 3,461,593 + MPMX20_03288 0.11 -1.7 3,461,599 - MPMX20_03288 0.11 +1.2 3,461,599 - MPMX20_03288 0.11 +0.8 3,461,599 - MPMX20_03288 0.11 -0.7 3,461,601 - MPMX20_03288 0.11 +1.2 3,461,601 - MPMX20_03288 0.11 -0.7 3,461,712 - MPMX20_03288 0.16 -1.0 3,461,748 + MPMX20_03288 0.18 -0.9 3,461,755 - MPMX20_03288 0.18 +0.8 3,461,781 - MPMX20_03288 0.19 -1.0 3,461,803 + MPMX20_03288 0.20 +0.4 3,461,921 - MPMX20_03288 0.26 -0.4 3,461,934 + MPMX20_03288 0.26 +0.4 3,461,934 + MPMX20_03288 0.26 -0.6 3,461,936 + MPMX20_03288 0.26 +2.0 3,461,969 + MPMX20_03288 0.28 +0.9 3,462,043 - MPMX20_03288 0.31 -0.0 3,462,079 + MPMX20_03288 0.33 -0.9 3,462,079 + MPMX20_03288 0.33 +0.8 3,462,122 - MPMX20_03288 0.35 +0.8 3,462,135 - MPMX20_03288 0.35 -0.9 3,462,136 - MPMX20_03288 0.35 +0.4 3,462,141 + MPMX20_03288 0.35 -1.2 3,462,160 - MPMX20_03288 0.36 -1.6 3,462,160 - MPMX20_03288 0.36 +0.0 3,462,173 + MPMX20_03288 0.37 +0.8 3,462,204 - MPMX20_03288 0.38 +2.8 3,462,204 - MPMX20_03288 0.38 -1.9 3,462,252 + MPMX20_03288 0.40 +0.2 3,462,273 + MPMX20_03288 0.41 -0.0 3,462,281 - MPMX20_03288 0.42 +0.0
Or see this region's nucleotide sequence