Experiment: 0.1X LB plate, 1:1 coculture with Paenibacillus lautus 004-C1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03144 and MPMX20_03145 overlap by 1 nucleotides MPMX20_03145 and MPMX20_03146 are separated by 1 nucleotides
MPMX20_03144: MPMX20_03144 - Inner membrane ABC transporter permease protein YejB, at 3,305,658 to 3,306,752
_03144
MPMX20_03145: MPMX20_03145 - Inner membrane ABC transporter permease protein YejE, at 3,306,752 to 3,307,777
_03145
MPMX20_03146: MPMX20_03146 - putative ABC transporter ATP-binding protein YejF, at 3,307,779 to 3,309,368
_03146
Position (kb)
3306
3307
3308 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 3305.807 kb on + strand, within MPMX20_03144 at 3305.984 kb on - strand, within MPMX20_03144 at 3306.070 kb on + strand, within MPMX20_03144 at 3306.070 kb on + strand, within MPMX20_03144 at 3306.072 kb on - strand, within MPMX20_03144 at 3306.072 kb on - strand, within MPMX20_03144 at 3306.078 kb on - strand, within MPMX20_03144 at 3306.078 kb on - strand, within MPMX20_03144 at 3306.078 kb on - strand, within MPMX20_03144 at 3306.078 kb on - strand, within MPMX20_03144 at 3306.125 kb on + strand, within MPMX20_03144 at 3306.143 kb on - strand, within MPMX20_03144 at 3306.159 kb on + strand, within MPMX20_03144 at 3306.159 kb on + strand, within MPMX20_03144 at 3306.167 kb on - strand, within MPMX20_03144 at 3306.167 kb on - strand, within MPMX20_03144 at 3306.277 kb on - strand, within MPMX20_03144 at 3306.310 kb on - strand, within MPMX20_03144 at 3306.442 kb on - strand, within MPMX20_03144 at 3306.507 kb on - strand, within MPMX20_03144 at 3306.509 kb on + strand, within MPMX20_03144 at 3306.575 kb on + strand, within MPMX20_03144 at 3306.657 kb on + strand at 3306.657 kb on + strand at 3306.665 kb on - strand at 3306.665 kb on - strand at 3306.665 kb on - strand at 3306.665 kb on - strand at 3306.665 kb on - strand at 3306.665 kb on - strand at 3306.717 kb on - strand at 3306.717 kb on - strand at 3306.869 kb on - strand, within MPMX20_03145 at 3306.924 kb on - strand, within MPMX20_03145 at 3307.016 kb on - strand, within MPMX20_03145 at 3307.031 kb on - strand, within MPMX20_03145 at 3307.127 kb on + strand, within MPMX20_03145 at 3307.159 kb on + strand, within MPMX20_03145 at 3307.241 kb on + strand, within MPMX20_03145 at 3307.246 kb on + strand, within MPMX20_03145 at 3307.379 kb on + strand, within MPMX20_03145 at 3307.461 kb on + strand, within MPMX20_03145 at 3307.463 kb on + strand, within MPMX20_03145 at 3307.463 kb on + strand, within MPMX20_03145 at 3307.463 kb on + strand, within MPMX20_03145 at 3307.463 kb on + strand, within MPMX20_03145 at 3307.471 kb on - strand, within MPMX20_03145 at 3307.521 kb on - strand, within MPMX20_03145 at 3307.563 kb on + strand, within MPMX20_03145 at 3307.605 kb on + strand, within MPMX20_03145 at 3307.632 kb on + strand, within MPMX20_03145 at 3307.780 kb on - strand at 3307.798 kb on + strand at 3307.800 kb on + strand at 3307.832 kb on + strand at 3307.890 kb on - strand at 3307.890 kb on - strand at 3308.089 kb on + strand, within MPMX20_03146 at 3308.089 kb on + strand, within MPMX20_03146 at 3308.089 kb on + strand, within MPMX20_03146 at 3308.089 kb on + strand, within MPMX20_03146 at 3308.097 kb on - strand, within MPMX20_03146 at 3308.097 kb on - strand, within MPMX20_03146 at 3308.097 kb on - strand, within MPMX20_03146 at 3308.097 kb on - strand, within MPMX20_03146 at 3308.097 kb on - strand, within MPMX20_03146 at 3308.302 kb on + strand, within MPMX20_03146 at 3308.324 kb on + strand, within MPMX20_03146 at 3308.332 kb on - strand, within MPMX20_03146 at 3308.403 kb on + strand, within MPMX20_03146 at 3308.538 kb on - strand, within MPMX20_03146 at 3308.538 kb on - strand, within MPMX20_03146 at 3308.558 kb on + strand, within MPMX20_03146 at 3308.735 kb on - strand, within MPMX20_03146 at 3308.764 kb on + strand, within MPMX20_03146 at 3308.766 kb on - strand, within MPMX20_03146 at 3308.772 kb on + strand, within MPMX20_03146 at 3308.772 kb on - strand, within MPMX20_03146
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Paenibacillus lautus 004-C1 remove 3,305,807 + MPMX20_03144 0.14 -1.1 3,305,984 - MPMX20_03144 0.30 -0.5 3,306,070 + MPMX20_03144 0.38 -1.0 3,306,070 + MPMX20_03144 0.38 +0.4 3,306,072 - MPMX20_03144 0.38 +1.4 3,306,072 - MPMX20_03144 0.38 -0.2 3,306,078 - MPMX20_03144 0.38 +0.6 3,306,078 - MPMX20_03144 0.38 -1.3 3,306,078 - MPMX20_03144 0.38 -1.9 3,306,078 - MPMX20_03144 0.38 -2.4 3,306,125 + MPMX20_03144 0.43 -0.4 3,306,143 - MPMX20_03144 0.44 -0.2 3,306,159 + MPMX20_03144 0.46 -1.5 3,306,159 + MPMX20_03144 0.46 -2.0 3,306,167 - MPMX20_03144 0.46 -0.9 3,306,167 - MPMX20_03144 0.46 -1.4 3,306,277 - MPMX20_03144 0.57 -0.4 3,306,310 - MPMX20_03144 0.60 -1.5 3,306,442 - MPMX20_03144 0.72 -1.8 3,306,507 - MPMX20_03144 0.78 -0.1 3,306,509 + MPMX20_03144 0.78 +0.3 3,306,575 + MPMX20_03144 0.84 -0.0 3,306,657 + -1.5 3,306,657 + +0.1 3,306,665 - -0.9 3,306,665 - -1.6 3,306,665 - -0.4 3,306,665 - -2.0 3,306,665 - +2.4 3,306,665 - +1.4 3,306,717 - -1.4 3,306,717 - -2.0 3,306,869 - MPMX20_03145 0.11 -1.1 3,306,924 - MPMX20_03145 0.17 +1.4 3,307,016 - MPMX20_03145 0.26 +1.4 3,307,031 - MPMX20_03145 0.27 -0.8 3,307,127 + MPMX20_03145 0.37 -0.7 3,307,159 + MPMX20_03145 0.40 +0.4 3,307,241 + MPMX20_03145 0.48 -0.2 3,307,246 + MPMX20_03145 0.48 +0.8 3,307,379 + MPMX20_03145 0.61 +0.9 3,307,461 + MPMX20_03145 0.69 -1.2 3,307,463 + MPMX20_03145 0.69 -1.0 3,307,463 + MPMX20_03145 0.69 +0.5 3,307,463 + MPMX20_03145 0.69 +1.5 3,307,463 + MPMX20_03145 0.69 +1.1 3,307,471 - MPMX20_03145 0.70 -0.9 3,307,521 - MPMX20_03145 0.75 -0.4 3,307,563 + MPMX20_03145 0.79 -2.9 3,307,605 + MPMX20_03145 0.83 -1.4 3,307,632 + MPMX20_03145 0.86 -2.2 3,307,780 - +5.0 3,307,798 + -0.7 3,307,800 + -1.3 3,307,832 + -0.9 3,307,890 - +0.1 3,307,890 - -1.7 3,308,089 + MPMX20_03146 0.19 -0.8 3,308,089 + MPMX20_03146 0.19 +0.9 3,308,089 + MPMX20_03146 0.19 -1.5 3,308,089 + MPMX20_03146 0.19 -0.9 3,308,097 - MPMX20_03146 0.20 +0.1 3,308,097 - MPMX20_03146 0.20 -1.7 3,308,097 - MPMX20_03146 0.20 -0.5 3,308,097 - MPMX20_03146 0.20 -1.3 3,308,097 - MPMX20_03146 0.20 -0.4 3,308,302 + MPMX20_03146 0.33 +0.1 3,308,324 + MPMX20_03146 0.34 +1.4 3,308,332 - MPMX20_03146 0.35 -0.9 3,308,403 + MPMX20_03146 0.39 -0.7 3,308,538 - MPMX20_03146 0.48 -0.7 3,308,538 - MPMX20_03146 0.48 -0.8 3,308,558 + MPMX20_03146 0.49 +1.2 3,308,735 - MPMX20_03146 0.60 -0.7 3,308,764 + MPMX20_03146 0.62 -1.7 3,308,766 - MPMX20_03146 0.62 +0.7 3,308,772 + MPMX20_03146 0.62 -0.4 3,308,772 - MPMX20_03146 0.62 -1.7
Or see this region's nucleotide sequence