Experiment: 0.1X LB plate, 1:1 coculture with Paenibacillus lautus 004-C1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03077 and MPMX20_03078 are separated by 628 nucleotides MPMX20_03078 and MPMX20_03079 are separated by 18 nucleotides
MPMX20_03077: MPMX20_03077 - Hydroxyethylthiazole kinase, at 3,226,824 to 3,227,594
_03077
MPMX20_03078: MPMX20_03078 - Diaminobutyrate--2-oxoglutarate aminotransferase, at 3,228,223 to 3,229,596
_03078
MPMX20_03079: MPMX20_03079 - L-2,4-diaminobutyrate decarboxylase, at 3,229,615 to 3,231,081
_03079
Position (kb)
3228
3229
3230 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3227.294 kb on - strand, within MPMX20_03077 at 3227.316 kb on + strand, within MPMX20_03077 at 3227.330 kb on - strand, within MPMX20_03077 at 3227.416 kb on - strand, within MPMX20_03077 at 3227.473 kb on - strand, within MPMX20_03077 at 3227.503 kb on + strand, within MPMX20_03077 at 3227.505 kb on - strand, within MPMX20_03077 at 3227.510 kb on - strand, within MPMX20_03077 at 3227.529 kb on - strand at 3227.582 kb on + strand at 3227.582 kb on + strand at 3227.590 kb on - strand at 3227.590 kb on - strand at 3227.720 kb on - strand at 3227.742 kb on - strand at 3227.760 kb on + strand at 3227.760 kb on + strand at 3227.760 kb on + strand at 3227.763 kb on - strand at 3227.771 kb on + strand at 3227.780 kb on - strand at 3227.815 kb on + strand at 3227.828 kb on - strand at 3227.828 kb on - strand at 3227.828 kb on - strand at 3227.828 kb on - strand at 3227.828 kb on - strand at 3227.828 kb on - strand at 3227.833 kb on + strand at 3227.869 kb on + strand at 3227.904 kb on - strand at 3227.919 kb on + strand at 3227.926 kb on - strand at 3227.927 kb on - strand at 3227.931 kb on + strand at 3227.932 kb on + strand at 3227.938 kb on - strand at 3227.939 kb on - strand at 3227.939 kb on - strand at 3227.940 kb on - strand at 3227.942 kb on + strand at 3227.948 kb on - strand at 3228.012 kb on + strand at 3228.067 kb on + strand at 3228.073 kb on - strand at 3228.073 kb on - strand at 3228.088 kb on - strand at 3228.088 kb on - strand at 3228.090 kb on + strand at 3228.103 kb on + strand at 3228.103 kb on + strand at 3228.103 kb on + strand at 3228.103 kb on + strand at 3228.111 kb on - strand at 3228.113 kb on - strand at 3228.133 kb on - strand at 3228.201 kb on - strand at 3228.307 kb on + strand at 3228.345 kb on + strand at 3228.345 kb on + strand at 3228.359 kb on + strand at 3228.419 kb on + strand, within MPMX20_03078 at 3228.427 kb on - strand, within MPMX20_03078 at 3228.427 kb on - strand, within MPMX20_03078 at 3228.427 kb on - strand, within MPMX20_03078 at 3228.427 kb on - strand, within MPMX20_03078 at 3228.427 kb on - strand, within MPMX20_03078 at 3228.438 kb on + strand, within MPMX20_03078 at 3228.440 kb on + strand, within MPMX20_03078 at 3228.497 kb on + strand, within MPMX20_03078 at 3228.497 kb on + strand, within MPMX20_03078 at 3228.505 kb on - strand, within MPMX20_03078 at 3228.515 kb on - strand, within MPMX20_03078 at 3228.545 kb on + strand, within MPMX20_03078 at 3228.564 kb on + strand, within MPMX20_03078 at 3228.572 kb on - strand, within MPMX20_03078 at 3228.572 kb on - strand, within MPMX20_03078 at 3228.669 kb on - strand, within MPMX20_03078 at 3228.669 kb on - strand, within MPMX20_03078 at 3228.761 kb on - strand, within MPMX20_03078 at 3228.779 kb on + strand, within MPMX20_03078 at 3228.786 kb on + strand, within MPMX20_03078 at 3228.787 kb on - strand, within MPMX20_03078 at 3228.792 kb on - strand, within MPMX20_03078 at 3228.868 kb on + strand, within MPMX20_03078 at 3228.903 kb on + strand, within MPMX20_03078 at 3228.918 kb on + strand, within MPMX20_03078 at 3229.017 kb on + strand, within MPMX20_03078 at 3229.029 kb on - strand, within MPMX20_03078 at 3229.178 kb on - strand, within MPMX20_03078 at 3229.219 kb on + strand, within MPMX20_03078 at 3229.267 kb on - strand, within MPMX20_03078 at 3229.269 kb on + strand, within MPMX20_03078 at 3229.523 kb on + strand at 3229.643 kb on + strand at 3229.643 kb on + strand at 3229.643 kb on + strand at 3229.651 kb on - strand at 3229.651 kb on - strand at 3229.664 kb on - strand at 3229.664 kb on - strand at 3229.684 kb on - strand at 3229.717 kb on - strand at 3229.742 kb on - strand at 3229.828 kb on - strand, within MPMX20_03079 at 3229.866 kb on + strand, within MPMX20_03079 at 3229.886 kb on + strand, within MPMX20_03079 at 3229.886 kb on + strand, within MPMX20_03079 at 3229.886 kb on + strand, within MPMX20_03079 at 3229.886 kb on + strand, within MPMX20_03079 at 3229.886 kb on + strand, within MPMX20_03079 at 3229.886 kb on + strand, within MPMX20_03079 at 3229.894 kb on - strand, within MPMX20_03079 at 3229.894 kb on - strand, within MPMX20_03079 at 3229.894 kb on - strand, within MPMX20_03079 at 3229.894 kb on - strand, within MPMX20_03079 at 3229.894 kb on - strand, within MPMX20_03079 at 3229.894 kb on - strand, within MPMX20_03079 at 3229.931 kb on + strand, within MPMX20_03079 at 3229.939 kb on - strand, within MPMX20_03079 at 3229.944 kb on - strand, within MPMX20_03079 at 3229.952 kb on + strand, within MPMX20_03079 at 3230.054 kb on - strand, within MPMX20_03079 at 3230.071 kb on + strand, within MPMX20_03079 at 3230.080 kb on + strand, within MPMX20_03079 at 3230.089 kb on - strand, within MPMX20_03079 at 3230.126 kb on - strand, within MPMX20_03079 at 3230.223 kb on - strand, within MPMX20_03079 at 3230.224 kb on + strand, within MPMX20_03079 at 3230.310 kb on + strand, within MPMX20_03079 at 3230.310 kb on + strand, within MPMX20_03079 at 3230.310 kb on + strand, within MPMX20_03079 at 3230.359 kb on - strand, within MPMX20_03079 at 3230.365 kb on - strand, within MPMX20_03079 at 3230.443 kb on + strand, within MPMX20_03079 at 3230.443 kb on + strand, within MPMX20_03079 at 3230.443 kb on + strand, within MPMX20_03079 at 3230.451 kb on - strand, within MPMX20_03079 at 3230.460 kb on + strand, within MPMX20_03079 at 3230.460 kb on + strand, within MPMX20_03079 at 3230.460 kb on + strand, within MPMX20_03079 at 3230.465 kb on + strand, within MPMX20_03079 at 3230.465 kb on + strand, within MPMX20_03079 at 3230.466 kb on - strand, within MPMX20_03079 at 3230.468 kb on - strand, within MPMX20_03079 at 3230.468 kb on - strand, within MPMX20_03079 at 3230.493 kb on - strand, within MPMX20_03079 at 3230.494 kb on - strand, within MPMX20_03079 at 3230.503 kb on - strand, within MPMX20_03079 at 3230.503 kb on - strand, within MPMX20_03079 at 3230.503 kb on - strand, within MPMX20_03079 at 3230.533 kb on + strand, within MPMX20_03079 at 3230.541 kb on + strand, within MPMX20_03079 at 3230.556 kb on - strand, within MPMX20_03079 at 3230.561 kb on + strand, within MPMX20_03079 at 3230.588 kb on + strand, within MPMX20_03079 at 3230.588 kb on + strand, within MPMX20_03079
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Paenibacillus lautus 004-C1 remove 3,227,294 - MPMX20_03077 0.61 -1.3 3,227,316 + MPMX20_03077 0.64 -2.3 3,227,330 - MPMX20_03077 0.66 +2.2 3,227,416 - MPMX20_03077 0.77 -1.2 3,227,473 - MPMX20_03077 0.84 -1.4 3,227,503 + MPMX20_03077 0.88 -1.4 3,227,505 - MPMX20_03077 0.88 -0.3 3,227,510 - MPMX20_03077 0.89 -2.5 3,227,529 - +2.3 3,227,582 + +0.8 3,227,582 + +0.1 3,227,590 - -0.2 3,227,590 - +3.1 3,227,720 - +0.9 3,227,742 - +0.3 3,227,760 + -0.1 3,227,760 + -0.6 3,227,760 + -0.2 3,227,763 - +0.7 3,227,771 + -0.1 3,227,780 - +0.6 3,227,815 + -2.5 3,227,828 - -1.3 3,227,828 - +1.1 3,227,828 - +0.7 3,227,828 - +2.4 3,227,828 - -0.2 3,227,828 - +1.4 3,227,833 + +0.4 3,227,869 + +0.7 3,227,904 - -0.1 3,227,919 + +0.4 3,227,926 - -0.4 3,227,927 - -1.6 3,227,931 + +0.6 3,227,932 + -0.4 3,227,938 - +1.1 3,227,939 - +0.3 3,227,939 - +1.2 3,227,940 - +0.1 3,227,942 + +3.0 3,227,948 - -2.5 3,228,012 + -0.7 3,228,067 + +0.3 3,228,073 - +1.6 3,228,073 - +0.0 3,228,088 - -0.4 3,228,088 - +0.6 3,228,090 + -1.0 3,228,103 + -1.3 3,228,103 + +2.4 3,228,103 + +0.2 3,228,103 + +0.9 3,228,111 - -1.4 3,228,113 - +1.2 3,228,133 - +2.7 3,228,201 - +0.3 3,228,307 + -1.4 3,228,345 + -3.1 3,228,345 + +1.0 3,228,359 + +1.4 3,228,419 + MPMX20_03078 0.14 +0.8 3,228,427 - MPMX20_03078 0.15 +1.2 3,228,427 - MPMX20_03078 0.15 -1.4 3,228,427 - MPMX20_03078 0.15 -2.5 3,228,427 - MPMX20_03078 0.15 +0.5 3,228,427 - MPMX20_03078 0.15 +0.5 3,228,438 + MPMX20_03078 0.16 +0.8 3,228,440 + MPMX20_03078 0.16 -2.3 3,228,497 + MPMX20_03078 0.20 +0.4 3,228,497 + MPMX20_03078 0.20 +0.2 3,228,505 - MPMX20_03078 0.21 +1.3 3,228,515 - MPMX20_03078 0.21 +2.4 3,228,545 + MPMX20_03078 0.23 +1.8 3,228,564 + MPMX20_03078 0.25 +0.4 3,228,572 - MPMX20_03078 0.25 +1.1 3,228,572 - MPMX20_03078 0.25 +1.5 3,228,669 - MPMX20_03078 0.32 +1.4 3,228,669 - MPMX20_03078 0.32 +2.0 3,228,761 - MPMX20_03078 0.39 -0.3 3,228,779 + MPMX20_03078 0.40 +1.2 3,228,786 + MPMX20_03078 0.41 +0.9 3,228,787 - MPMX20_03078 0.41 +2.2 3,228,792 - MPMX20_03078 0.41 +0.4 3,228,868 + MPMX20_03078 0.47 +0.2 3,228,903 + MPMX20_03078 0.49 +2.1 3,228,918 + MPMX20_03078 0.51 +0.3 3,229,017 + MPMX20_03078 0.58 -0.8 3,229,029 - MPMX20_03078 0.59 +0.6 3,229,178 - MPMX20_03078 0.70 +0.4 3,229,219 + MPMX20_03078 0.72 +0.5 3,229,267 - MPMX20_03078 0.76 -0.9 3,229,269 + MPMX20_03078 0.76 +4.1 3,229,523 + +0.9 3,229,643 + +1.0 3,229,643 + +0.6 3,229,643 + +0.3 3,229,651 - -1.4 3,229,651 - +2.7 3,229,664 - +2.3 3,229,664 - -0.9 3,229,684 - +0.5 3,229,717 - -0.3 3,229,742 - +0.0 3,229,828 - MPMX20_03079 0.15 -0.6 3,229,866 + MPMX20_03079 0.17 +1.8 3,229,886 + MPMX20_03079 0.18 +0.5 3,229,886 + MPMX20_03079 0.18 -0.2 3,229,886 + MPMX20_03079 0.18 +2.4 3,229,886 + MPMX20_03079 0.18 +0.6 3,229,886 + MPMX20_03079 0.18 +0.6 3,229,886 + MPMX20_03079 0.18 -0.5 3,229,894 - MPMX20_03079 0.19 -1.0 3,229,894 - MPMX20_03079 0.19 -1.1 3,229,894 - MPMX20_03079 0.19 +1.4 3,229,894 - MPMX20_03079 0.19 +0.9 3,229,894 - MPMX20_03079 0.19 -0.1 3,229,894 - MPMX20_03079 0.19 -0.4 3,229,931 + MPMX20_03079 0.22 -0.4 3,229,939 - MPMX20_03079 0.22 +0.7 3,229,944 - MPMX20_03079 0.22 -1.4 3,229,952 + MPMX20_03079 0.23 +0.8 3,230,054 - MPMX20_03079 0.30 +0.5 3,230,071 + MPMX20_03079 0.31 +0.6 3,230,080 + MPMX20_03079 0.32 +1.7 3,230,089 - MPMX20_03079 0.32 -1.6 3,230,126 - MPMX20_03079 0.35 -1.7 3,230,223 - MPMX20_03079 0.41 +1.4 3,230,224 + MPMX20_03079 0.42 -2.0 3,230,310 + MPMX20_03079 0.47 +1.5 3,230,310 + MPMX20_03079 0.47 -2.1 3,230,310 + MPMX20_03079 0.47 +0.7 3,230,359 - MPMX20_03079 0.51 +0.1 3,230,365 - MPMX20_03079 0.51 +3.0 3,230,443 + MPMX20_03079 0.56 +0.1 3,230,443 + MPMX20_03079 0.56 +2.4 3,230,443 + MPMX20_03079 0.56 +1.0 3,230,451 - MPMX20_03079 0.57 +2.4 3,230,460 + MPMX20_03079 0.58 -1.1 3,230,460 + MPMX20_03079 0.58 -1.2 3,230,460 + MPMX20_03079 0.58 -0.0 3,230,465 + MPMX20_03079 0.58 +0.6 3,230,465 + MPMX20_03079 0.58 -1.0 3,230,466 - MPMX20_03079 0.58 +0.1 3,230,468 - MPMX20_03079 0.58 +1.8 3,230,468 - MPMX20_03079 0.58 +0.7 3,230,493 - MPMX20_03079 0.60 +2.1 3,230,494 - MPMX20_03079 0.60 +0.8 3,230,503 - MPMX20_03079 0.61 +1.4 3,230,503 - MPMX20_03079 0.61 +1.1 3,230,503 - MPMX20_03079 0.61 +2.5 3,230,533 + MPMX20_03079 0.63 +0.9 3,230,541 + MPMX20_03079 0.63 +1.2 3,230,556 - MPMX20_03079 0.64 +1.6 3,230,561 + MPMX20_03079 0.64 -1.6 3,230,588 + MPMX20_03079 0.66 -1.8 3,230,588 + MPMX20_03079 0.66 -0.2
Or see this region's nucleotide sequence