Experiment: 0.1X LB plate, 1:1 coculture with Paenibacillus lautus 004-C1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02584 and MPMX20_02585 are separated by 11 nucleotides MPMX20_02585 and MPMX20_02586 are separated by 14 nucleotides
MPMX20_02584: MPMX20_02584 - Oligopeptide transport ATP-binding protein OppD, at 2,719,168 to 2,720,181
_02584
MPMX20_02585: MPMX20_02585 - Oligopeptide transport system permease protein OppC, at 2,720,193 to 2,721,101
_02585
MPMX20_02586: MPMX20_02586 - Oligopeptide transport system permease protein OppB, at 2,721,116 to 2,722,036
_02586
Position (kb)
2720
2721
2722 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2719.196 kb on - strand at 2719.196 kb on - strand at 2719.223 kb on - strand at 2719.241 kb on + strand at 2719.352 kb on + strand, within MPMX20_02584 at 2719.380 kb on + strand, within MPMX20_02584 at 2719.388 kb on + strand, within MPMX20_02584 at 2719.388 kb on + strand, within MPMX20_02584 at 2719.388 kb on + strand, within MPMX20_02584 at 2719.388 kb on + strand, within MPMX20_02584 at 2719.388 kb on + strand, within MPMX20_02584 at 2719.395 kb on + strand, within MPMX20_02584 at 2719.396 kb on - strand, within MPMX20_02584 at 2719.407 kb on + strand, within MPMX20_02584 at 2719.441 kb on - strand, within MPMX20_02584 at 2719.442 kb on - strand, within MPMX20_02584 at 2719.531 kb on - strand, within MPMX20_02584 at 2719.535 kb on + strand, within MPMX20_02584 at 2719.574 kb on - strand, within MPMX20_02584 at 2719.581 kb on + strand, within MPMX20_02584 at 2719.589 kb on - strand, within MPMX20_02584 at 2719.589 kb on - strand, within MPMX20_02584 at 2719.667 kb on - strand, within MPMX20_02584 at 2719.749 kb on + strand, within MPMX20_02584 at 2719.749 kb on + strand, within MPMX20_02584 at 2719.757 kb on - strand, within MPMX20_02584 at 2719.757 kb on - strand, within MPMX20_02584 at 2719.764 kb on - strand, within MPMX20_02584 at 2719.768 kb on + strand, within MPMX20_02584 at 2719.768 kb on + strand, within MPMX20_02584 at 2719.768 kb on + strand, within MPMX20_02584 at 2719.768 kb on + strand, within MPMX20_02584 at 2719.768 kb on + strand, within MPMX20_02584 at 2719.776 kb on - strand, within MPMX20_02584 at 2719.776 kb on - strand, within MPMX20_02584 at 2719.913 kb on - strand, within MPMX20_02584 at 2719.950 kb on - strand, within MPMX20_02584 at 2719.975 kb on - strand, within MPMX20_02584 at 2720.046 kb on + strand, within MPMX20_02584 at 2720.046 kb on + strand, within MPMX20_02584 at 2720.061 kb on - strand, within MPMX20_02584 at 2720.099 kb on - strand at 2720.103 kb on + strand at 2720.124 kb on + strand at 2720.129 kb on + strand at 2720.184 kb on - strand at 2720.191 kb on + strand at 2720.199 kb on - strand at 2720.199 kb on - strand at 2720.199 kb on - strand at 2720.199 kb on - strand at 2720.225 kb on + strand at 2720.225 kb on + strand at 2720.280 kb on + strand at 2720.288 kb on - strand, within MPMX20_02585 at 2720.288 kb on - strand, within MPMX20_02585 at 2720.333 kb on - strand, within MPMX20_02585 at 2720.354 kb on - strand, within MPMX20_02585 at 2720.354 kb on - strand, within MPMX20_02585 at 2720.369 kb on + strand, within MPMX20_02585 at 2720.387 kb on - strand, within MPMX20_02585 at 2720.435 kb on + strand, within MPMX20_02585 at 2720.443 kb on - strand, within MPMX20_02585 at 2720.458 kb on - strand, within MPMX20_02585 at 2720.484 kb on + strand, within MPMX20_02585 at 2720.494 kb on + strand, within MPMX20_02585 at 2720.502 kb on - strand, within MPMX20_02585 at 2720.502 kb on - strand, within MPMX20_02585 at 2720.502 kb on - strand, within MPMX20_02585 at 2720.536 kb on - strand, within MPMX20_02585 at 2720.647 kb on - strand, within MPMX20_02585 at 2720.719 kb on - strand, within MPMX20_02585 at 2720.741 kb on - strand, within MPMX20_02585 at 2720.825 kb on - strand, within MPMX20_02585 at 2721.037 kb on - strand at 2721.144 kb on + strand at 2721.144 kb on + strand at 2721.206 kb on + strand at 2721.248 kb on - strand, within MPMX20_02586 at 2721.254 kb on - strand, within MPMX20_02586 at 2721.330 kb on + strand, within MPMX20_02586 at 2721.360 kb on - strand, within MPMX20_02586 at 2721.365 kb on - strand, within MPMX20_02586 at 2721.371 kb on + strand, within MPMX20_02586 at 2721.419 kb on + strand, within MPMX20_02586 at 2721.436 kb on + strand, within MPMX20_02586 at 2721.480 kb on + strand, within MPMX20_02586 at 2721.546 kb on + strand, within MPMX20_02586 at 2721.578 kb on + strand, within MPMX20_02586 at 2721.579 kb on + strand, within MPMX20_02586 at 2721.601 kb on + strand, within MPMX20_02586 at 2721.611 kb on + strand, within MPMX20_02586 at 2721.611 kb on + strand, within MPMX20_02586 at 2721.611 kb on + strand, within MPMX20_02586 at 2721.619 kb on - strand, within MPMX20_02586 at 2721.619 kb on - strand, within MPMX20_02586 at 2721.619 kb on - strand, within MPMX20_02586 at 2721.639 kb on - strand, within MPMX20_02586 at 2721.656 kb on - strand, within MPMX20_02586 at 2721.702 kb on - strand, within MPMX20_02586 at 2721.719 kb on + strand, within MPMX20_02586 at 2721.738 kb on + strand, within MPMX20_02586 at 2721.766 kb on + strand, within MPMX20_02586 at 2721.821 kb on - strand, within MPMX20_02586 at 2721.842 kb on + strand, within MPMX20_02586 at 2721.851 kb on - strand, within MPMX20_02586 at 2721.916 kb on + strand, within MPMX20_02586 at 2722.003 kb on + strand at 2722.003 kb on + strand at 2722.003 kb on + strand at 2722.003 kb on + strand at 2722.003 kb on + strand at 2722.003 kb on + strand at 2722.003 kb on + strand at 2722.003 kb on + strand at 2722.003 kb on + strand at 2722.003 kb on + strand at 2722.003 kb on + strand at 2722.003 kb on + strand at 2722.011 kb on - strand at 2722.011 kb on - strand at 2722.011 kb on - strand at 2722.011 kb on - strand at 2722.011 kb on - strand at 2722.011 kb on - strand at 2722.011 kb on - strand at 2722.011 kb on - strand at 2722.011 kb on - strand at 2722.011 kb on - strand at 2722.011 kb on - strand at 2722.011 kb on - strand at 2722.046 kb on - strand at 2722.078 kb on - strand at 2722.094 kb on + strand at 2722.094 kb on + strand at 2722.094 kb on + strand at 2722.099 kb on + strand at 2722.101 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Paenibacillus lautus 004-C1 remove 2,719,196 - -1.0 2,719,196 - +0.1 2,719,223 - -1.0 2,719,241 + -1.2 2,719,352 + MPMX20_02584 0.18 -1.0 2,719,380 + MPMX20_02584 0.21 +0.6 2,719,388 + MPMX20_02584 0.22 +1.4 2,719,388 + MPMX20_02584 0.22 +0.1 2,719,388 + MPMX20_02584 0.22 -2.2 2,719,388 + MPMX20_02584 0.22 -1.8 2,719,388 + MPMX20_02584 0.22 -2.4 2,719,395 + MPMX20_02584 0.22 -2.2 2,719,396 - MPMX20_02584 0.22 -2.7 2,719,407 + MPMX20_02584 0.24 +0.4 2,719,441 - MPMX20_02584 0.27 -2.2 2,719,442 - MPMX20_02584 0.27 -0.8 2,719,531 - MPMX20_02584 0.36 -2.0 2,719,535 + MPMX20_02584 0.36 -1.4 2,719,574 - MPMX20_02584 0.40 -1.4 2,719,581 + MPMX20_02584 0.41 -1.8 2,719,589 - MPMX20_02584 0.42 +0.7 2,719,589 - MPMX20_02584 0.42 +0.5 2,719,667 - MPMX20_02584 0.49 -0.3 2,719,749 + MPMX20_02584 0.57 +0.1 2,719,749 + MPMX20_02584 0.57 -1.8 2,719,757 - MPMX20_02584 0.58 -1.9 2,719,757 - MPMX20_02584 0.58 +0.4 2,719,764 - MPMX20_02584 0.59 -0.3 2,719,768 + MPMX20_02584 0.59 +0.4 2,719,768 + MPMX20_02584 0.59 -0.7 2,719,768 + MPMX20_02584 0.59 -1.2 2,719,768 + MPMX20_02584 0.59 +0.5 2,719,768 + MPMX20_02584 0.59 -0.8 2,719,776 - MPMX20_02584 0.60 -1.7 2,719,776 - MPMX20_02584 0.60 -1.6 2,719,913 - MPMX20_02584 0.73 -1.8 2,719,950 - MPMX20_02584 0.77 -1.7 2,719,975 - MPMX20_02584 0.80 -2.5 2,720,046 + MPMX20_02584 0.87 -1.8 2,720,046 + MPMX20_02584 0.87 -1.7 2,720,061 - MPMX20_02584 0.88 -1.8 2,720,099 - +0.4 2,720,103 + -1.4 2,720,124 + -1.2 2,720,129 + +0.6 2,720,184 - -0.1 2,720,191 + -1.8 2,720,199 - +1.0 2,720,199 - -1.1 2,720,199 - -0.7 2,720,199 - -2.0 2,720,225 + -1.9 2,720,225 + -3.3 2,720,280 + +0.1 2,720,288 - MPMX20_02585 0.10 -0.4 2,720,288 - MPMX20_02585 0.10 -0.6 2,720,333 - MPMX20_02585 0.15 -0.0 2,720,354 - MPMX20_02585 0.18 -2.7 2,720,354 - MPMX20_02585 0.18 -0.4 2,720,369 + MPMX20_02585 0.19 -3.3 2,720,387 - MPMX20_02585 0.21 -2.9 2,720,435 + MPMX20_02585 0.27 +1.6 2,720,443 - MPMX20_02585 0.28 -2.7 2,720,458 - MPMX20_02585 0.29 +1.9 2,720,484 + MPMX20_02585 0.32 -1.9 2,720,494 + MPMX20_02585 0.33 -0.9 2,720,502 - MPMX20_02585 0.34 -0.0 2,720,502 - MPMX20_02585 0.34 -0.4 2,720,502 - MPMX20_02585 0.34 -2.7 2,720,536 - MPMX20_02585 0.38 -1.1 2,720,647 - MPMX20_02585 0.50 -1.2 2,720,719 - MPMX20_02585 0.58 -1.6 2,720,741 - MPMX20_02585 0.60 -0.2 2,720,825 - MPMX20_02585 0.70 -0.6 2,721,037 - +4.0 2,721,144 + -2.6 2,721,144 + +0.8 2,721,206 + +0.1 2,721,248 - MPMX20_02586 0.14 -1.0 2,721,254 - MPMX20_02586 0.15 -2.0 2,721,330 + MPMX20_02586 0.23 -1.7 2,721,360 - MPMX20_02586 0.26 -0.5 2,721,365 - MPMX20_02586 0.27 -2.9 2,721,371 + MPMX20_02586 0.28 +1.4 2,721,419 + MPMX20_02586 0.33 -0.9 2,721,436 + MPMX20_02586 0.35 -3.5 2,721,480 + MPMX20_02586 0.40 -1.3 2,721,546 + MPMX20_02586 0.47 -3.2 2,721,578 + MPMX20_02586 0.50 -3.0 2,721,579 + MPMX20_02586 0.50 -3.2 2,721,601 + MPMX20_02586 0.53 -0.7 2,721,611 + MPMX20_02586 0.54 -0.8 2,721,611 + MPMX20_02586 0.54 -1.0 2,721,611 + MPMX20_02586 0.54 +0.4 2,721,619 - MPMX20_02586 0.55 -1.0 2,721,619 - MPMX20_02586 0.55 -0.6 2,721,619 - MPMX20_02586 0.55 +0.4 2,721,639 - MPMX20_02586 0.57 +1.7 2,721,656 - MPMX20_02586 0.59 -0.7 2,721,702 - MPMX20_02586 0.64 +0.4 2,721,719 + MPMX20_02586 0.65 -2.4 2,721,738 + MPMX20_02586 0.68 -2.6 2,721,766 + MPMX20_02586 0.71 -2.3 2,721,821 - MPMX20_02586 0.77 -0.9 2,721,842 + MPMX20_02586 0.79 +0.3 2,721,851 - MPMX20_02586 0.80 +0.1 2,721,916 + MPMX20_02586 0.87 -0.6 2,722,003 + -1.6 2,722,003 + -2.7 2,722,003 + -1.2 2,722,003 + -1.6 2,722,003 + -1.4 2,722,003 + -0.9 2,722,003 + +1.0 2,722,003 + -2.9 2,722,003 + -0.9 2,722,003 + -2.9 2,722,003 + -2.6 2,722,003 + -2.2 2,722,011 - +1.4 2,722,011 - -0.7 2,722,011 - -0.7 2,722,011 - -2.4 2,722,011 - -2.1 2,722,011 - -2.7 2,722,011 - -2.0 2,722,011 - +0.1 2,722,011 - -1.7 2,722,011 - -1.8 2,722,011 - -1.0 2,722,011 - +1.8 2,722,046 - -3.1 2,722,078 - -1.0 2,722,094 + -0.2 2,722,094 + +0.1 2,722,094 + -2.6 2,722,099 + -1.1 2,722,101 - +1.1
Or see this region's nucleotide sequence