Experiment: 0.1X LB plate, 1:1 coculture with Paenibacillus lautus 004-C1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02405 and MPMX20_02406 are separated by 347 nucleotides MPMX20_02406 and MPMX20_02407 are separated by 71 nucleotides
MPMX20_02405: MPMX20_02405 - Aerotaxis receptor, at 2,536,712 to 2,538,265
_02405
MPMX20_02406: MPMX20_02406 - L-asparagine permease 2, at 2,538,613 to 2,540,109
_02406
MPMX20_02407: MPMX20_02407 - putative protein YncE, at 2,540,181 to 2,541,242
_02407
Position (kb)
2538
2539
2540
2541 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6
7
8
9
10 at 2537.715 kb on + strand, within MPMX20_02405 at 2537.811 kb on - strand, within MPMX20_02405 at 2537.918 kb on + strand, within MPMX20_02405 at 2537.920 kb on + strand, within MPMX20_02405 at 2537.925 kb on + strand, within MPMX20_02405 at 2537.998 kb on + strand, within MPMX20_02405 at 2538.015 kb on - strand, within MPMX20_02405 at 2538.056 kb on + strand, within MPMX20_02405 at 2538.064 kb on - strand, within MPMX20_02405 at 2538.082 kb on + strand, within MPMX20_02405 at 2538.103 kb on + strand, within MPMX20_02405 at 2538.103 kb on + strand, within MPMX20_02405 at 2538.105 kb on + strand, within MPMX20_02405 at 2538.112 kb on - strand at 2538.122 kb on + strand at 2538.169 kb on - strand at 2538.209 kb on - strand at 2538.209 kb on - strand at 2538.210 kb on + strand at 2538.220 kb on + strand at 2538.228 kb on - strand at 2538.264 kb on + strand at 2538.395 kb on - strand at 2538.437 kb on + strand at 2538.490 kb on - strand at 2538.494 kb on + strand at 2538.518 kb on + strand at 2538.568 kb on - strand at 2538.586 kb on + strand at 2538.645 kb on - strand at 2538.660 kb on - strand at 2538.674 kb on + strand at 2538.751 kb on + strand at 2538.764 kb on - strand, within MPMX20_02406 at 2538.783 kb on - strand, within MPMX20_02406 at 2538.793 kb on - strand, within MPMX20_02406 at 2538.807 kb on + strand, within MPMX20_02406 at 2538.807 kb on + strand, within MPMX20_02406 at 2538.815 kb on - strand, within MPMX20_02406 at 2538.865 kb on + strand, within MPMX20_02406 at 2538.956 kb on - strand, within MPMX20_02406 at 2538.956 kb on - strand, within MPMX20_02406 at 2538.963 kb on - strand, within MPMX20_02406 at 2539.024 kb on - strand, within MPMX20_02406 at 2539.048 kb on + strand, within MPMX20_02406 at 2539.048 kb on + strand, within MPMX20_02406 at 2539.096 kb on + strand, within MPMX20_02406 at 2539.122 kb on + strand, within MPMX20_02406 at 2539.137 kb on + strand, within MPMX20_02406 at 2539.145 kb on - strand, within MPMX20_02406 at 2539.152 kb on - strand, within MPMX20_02406 at 2539.161 kb on + strand, within MPMX20_02406 at 2539.161 kb on + strand, within MPMX20_02406 at 2539.172 kb on + strand, within MPMX20_02406 at 2539.223 kb on + strand, within MPMX20_02406 at 2539.264 kb on + strand, within MPMX20_02406 at 2539.287 kb on + strand, within MPMX20_02406 at 2539.288 kb on + strand, within MPMX20_02406 at 2539.295 kb on - strand, within MPMX20_02406 at 2539.300 kb on + strand, within MPMX20_02406 at 2539.300 kb on + strand, within MPMX20_02406 at 2539.308 kb on - strand, within MPMX20_02406 at 2539.308 kb on - strand, within MPMX20_02406 at 2539.324 kb on - strand, within MPMX20_02406 at 2539.326 kb on + strand, within MPMX20_02406 at 2539.331 kb on + strand, within MPMX20_02406 at 2539.334 kb on - strand, within MPMX20_02406 at 2539.339 kb on - strand, within MPMX20_02406 at 2539.354 kb on + strand, within MPMX20_02406 at 2539.362 kb on + strand, within MPMX20_02406 at 2539.379 kb on - strand, within MPMX20_02406 at 2539.398 kb on - strand, within MPMX20_02406 at 2539.418 kb on - strand, within MPMX20_02406 at 2539.472 kb on + strand, within MPMX20_02406 at 2539.496 kb on + strand, within MPMX20_02406 at 2539.496 kb on + strand, within MPMX20_02406 at 2539.496 kb on + strand, within MPMX20_02406 at 2539.496 kb on + strand, within MPMX20_02406 at 2539.504 kb on - strand, within MPMX20_02406 at 2539.568 kb on - strand, within MPMX20_02406 at 2539.592 kb on + strand, within MPMX20_02406 at 2539.688 kb on + strand, within MPMX20_02406 at 2539.724 kb on + strand, within MPMX20_02406 at 2539.732 kb on - strand, within MPMX20_02406 at 2539.732 kb on - strand, within MPMX20_02406 at 2539.733 kb on + strand, within MPMX20_02406 at 2539.741 kb on - strand, within MPMX20_02406 at 2539.785 kb on - strand, within MPMX20_02406 at 2539.824 kb on - strand, within MPMX20_02406 at 2539.859 kb on + strand, within MPMX20_02406 at 2539.859 kb on + strand, within MPMX20_02406 at 2539.877 kb on - strand, within MPMX20_02406 at 2539.886 kb on + strand, within MPMX20_02406 at 2539.886 kb on + strand, within MPMX20_02406 at 2539.894 kb on - strand, within MPMX20_02406 at 2540.006 kb on + strand at 2540.006 kb on + strand at 2540.014 kb on - strand at 2540.016 kb on + strand at 2540.065 kb on - strand at 2540.116 kb on - strand at 2540.130 kb on - strand at 2540.140 kb on + strand at 2540.140 kb on + strand at 2540.148 kb on - strand at 2540.213 kb on + strand at 2540.261 kb on + strand at 2540.261 kb on + strand at 2540.318 kb on - strand, within MPMX20_02407 at 2540.327 kb on + strand, within MPMX20_02407 at 2540.363 kb on - strand, within MPMX20_02407 at 2540.401 kb on + strand, within MPMX20_02407 at 2540.409 kb on - strand, within MPMX20_02407 at 2540.409 kb on - strand, within MPMX20_02407 at 2540.409 kb on - strand, within MPMX20_02407 at 2540.409 kb on - strand, within MPMX20_02407 at 2540.516 kb on + strand, within MPMX20_02407 at 2540.516 kb on + strand, within MPMX20_02407 at 2540.524 kb on - strand, within MPMX20_02407 at 2540.731 kb on - strand, within MPMX20_02407 at 2540.735 kb on + strand, within MPMX20_02407 at 2540.754 kb on + strand, within MPMX20_02407 at 2540.754 kb on + strand, within MPMX20_02407 at 2540.754 kb on + strand, within MPMX20_02407 at 2540.754 kb on + strand, within MPMX20_02407 at 2540.754 kb on + strand, within MPMX20_02407 at 2540.754 kb on + strand, within MPMX20_02407 at 2540.754 kb on + strand, within MPMX20_02407 at 2540.754 kb on + strand, within MPMX20_02407 at 2540.754 kb on + strand, within MPMX20_02407 at 2540.754 kb on + strand, within MPMX20_02407 at 2540.754 kb on + strand, within MPMX20_02407 at 2540.754 kb on + strand, within MPMX20_02407 at 2540.754 kb on + strand, within MPMX20_02407 at 2540.754 kb on + strand, within MPMX20_02407 at 2540.754 kb on + strand, within MPMX20_02407 at 2540.754 kb on + strand, within MPMX20_02407 at 2540.754 kb on + strand, within MPMX20_02407 at 2540.754 kb on + strand, within MPMX20_02407 at 2540.754 kb on + strand, within MPMX20_02407 at 2540.754 kb on + strand, within MPMX20_02407 at 2540.754 kb on + strand, within MPMX20_02407 at 2540.762 kb on - strand, within MPMX20_02407 at 2540.762 kb on - strand, within MPMX20_02407 at 2540.762 kb on - strand, within MPMX20_02407 at 2540.762 kb on - strand, within MPMX20_02407 at 2540.762 kb on - strand, within MPMX20_02407 at 2540.762 kb on - strand, within MPMX20_02407 at 2540.762 kb on - strand, within MPMX20_02407 at 2540.762 kb on - strand, within MPMX20_02407 at 2540.762 kb on - strand, within MPMX20_02407 at 2540.762 kb on - strand, within MPMX20_02407 at 2540.762 kb on - strand, within MPMX20_02407 at 2540.762 kb on - strand, within MPMX20_02407 at 2540.762 kb on - strand, within MPMX20_02407 at 2540.762 kb on - strand, within MPMX20_02407 at 2540.762 kb on - strand, within MPMX20_02407 at 2540.767 kb on - strand, within MPMX20_02407 at 2540.772 kb on + strand, within MPMX20_02407 at 2540.772 kb on - strand, within MPMX20_02407 at 2540.801 kb on - strand, within MPMX20_02407 at 2540.808 kb on - strand, within MPMX20_02407 at 2540.848 kb on + strand, within MPMX20_02407 at 2540.853 kb on + strand, within MPMX20_02407 at 2540.866 kb on - strand, within MPMX20_02407 at 2540.922 kb on - strand, within MPMX20_02407 at 2541.010 kb on - strand, within MPMX20_02407 at 2541.010 kb on - strand, within MPMX20_02407 at 2541.025 kb on - strand, within MPMX20_02407 at 2541.076 kb on - strand, within MPMX20_02407 at 2541.090 kb on - strand, within MPMX20_02407
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Paenibacillus lautus 004-C1 remove 2,537,715 + MPMX20_02405 0.65 +0.7 2,537,811 - MPMX20_02405 0.71 -0.3 2,537,918 + MPMX20_02405 0.78 -0.3 2,537,920 + MPMX20_02405 0.78 -1.0 2,537,925 + MPMX20_02405 0.78 -0.5 2,537,998 + MPMX20_02405 0.83 +0.8 2,538,015 - MPMX20_02405 0.84 -1.1 2,538,056 + MPMX20_02405 0.86 -1.2 2,538,064 - MPMX20_02405 0.87 -0.5 2,538,082 + MPMX20_02405 0.88 -0.4 2,538,103 + MPMX20_02405 0.90 +0.6 2,538,103 + MPMX20_02405 0.90 +0.8 2,538,105 + MPMX20_02405 0.90 +2.7 2,538,112 - -0.9 2,538,122 + -1.3 2,538,169 - -0.2 2,538,209 - -0.1 2,538,209 - +0.4 2,538,210 + -0.2 2,538,220 + -0.9 2,538,228 - -0.5 2,538,264 + -0.8 2,538,395 - -0.4 2,538,437 + +0.4 2,538,490 - +3.3 2,538,494 + +0.2 2,538,518 + +0.9 2,538,568 - +3.4 2,538,586 + +1.8 2,538,645 - +6.8 2,538,660 - +10.3 2,538,674 + +9.9 2,538,751 + +7.9 2,538,764 - MPMX20_02406 0.10 +6.6 2,538,783 - MPMX20_02406 0.11 +7.7 2,538,793 - MPMX20_02406 0.12 +5.8 2,538,807 + MPMX20_02406 0.13 +6.0 2,538,807 + MPMX20_02406 0.13 +5.4 2,538,815 - MPMX20_02406 0.13 +4.4 2,538,865 + MPMX20_02406 0.17 +6.6 2,538,956 - MPMX20_02406 0.23 +3.4 2,538,956 - MPMX20_02406 0.23 +6.0 2,538,963 - MPMX20_02406 0.23 +5.2 2,539,024 - MPMX20_02406 0.27 +5.7 2,539,048 + MPMX20_02406 0.29 +9.2 2,539,048 + MPMX20_02406 0.29 +4.5 2,539,096 + MPMX20_02406 0.32 +7.3 2,539,122 + MPMX20_02406 0.34 +4.2 2,539,137 + MPMX20_02406 0.35 +9.8 2,539,145 - MPMX20_02406 0.36 +6.3 2,539,152 - MPMX20_02406 0.36 +5.9 2,539,161 + MPMX20_02406 0.37 +8.3 2,539,161 + MPMX20_02406 0.37 +8.4 2,539,172 + MPMX20_02406 0.37 +5.0 2,539,223 + MPMX20_02406 0.41 +5.4 2,539,264 + MPMX20_02406 0.43 +1.5 2,539,287 + MPMX20_02406 0.45 +2.6 2,539,288 + MPMX20_02406 0.45 +6.4 2,539,295 - MPMX20_02406 0.46 +6.1 2,539,300 + MPMX20_02406 0.46 +6.7 2,539,300 + MPMX20_02406 0.46 +8.3 2,539,308 - MPMX20_02406 0.46 +7.2 2,539,308 - MPMX20_02406 0.46 +5.3 2,539,324 - MPMX20_02406 0.47 +3.0 2,539,326 + MPMX20_02406 0.48 +5.0 2,539,331 + MPMX20_02406 0.48 +2.4 2,539,334 - MPMX20_02406 0.48 +7.9 2,539,339 - MPMX20_02406 0.48 +7.4 2,539,354 + MPMX20_02406 0.49 +5.5 2,539,362 + MPMX20_02406 0.50 +1.7 2,539,379 - MPMX20_02406 0.51 +5.9 2,539,398 - MPMX20_02406 0.52 +5.8 2,539,418 - MPMX20_02406 0.54 +7.5 2,539,472 + MPMX20_02406 0.57 +7.6 2,539,496 + MPMX20_02406 0.59 +6.8 2,539,496 + MPMX20_02406 0.59 +7.6 2,539,496 + MPMX20_02406 0.59 +8.4 2,539,496 + MPMX20_02406 0.59 +4.6 2,539,504 - MPMX20_02406 0.60 +7.0 2,539,568 - MPMX20_02406 0.64 +7.7 2,539,592 + MPMX20_02406 0.65 +5.2 2,539,688 + MPMX20_02406 0.72 +7.7 2,539,724 + MPMX20_02406 0.74 +6.0 2,539,732 - MPMX20_02406 0.75 +0.6 2,539,732 - MPMX20_02406 0.75 +4.6 2,539,733 + MPMX20_02406 0.75 +5.2 2,539,741 - MPMX20_02406 0.75 +5.3 2,539,785 - MPMX20_02406 0.78 +4.2 2,539,824 - MPMX20_02406 0.81 +6.9 2,539,859 + MPMX20_02406 0.83 +7.6 2,539,859 + MPMX20_02406 0.83 +4.0 2,539,877 - MPMX20_02406 0.84 +5.2 2,539,886 + MPMX20_02406 0.85 +6.7 2,539,886 + MPMX20_02406 0.85 +7.4 2,539,894 - MPMX20_02406 0.86 +6.8 2,540,006 + -1.0 2,540,006 + +2.3 2,540,014 - +6.7 2,540,016 + +5.2 2,540,065 - +1.4 2,540,116 - +1.5 2,540,130 - +0.3 2,540,140 + +0.5 2,540,140 + +0.6 2,540,148 - +2.4 2,540,213 + +0.7 2,540,261 + +0.1 2,540,261 + -0.2 2,540,318 - MPMX20_02407 0.13 -3.0 2,540,327 + MPMX20_02407 0.14 -1.1 2,540,363 - MPMX20_02407 0.17 +0.7 2,540,401 + MPMX20_02407 0.21 +0.2 2,540,409 - MPMX20_02407 0.21 -1.8 2,540,409 - MPMX20_02407 0.21 -1.5 2,540,409 - MPMX20_02407 0.21 -2.4 2,540,409 - MPMX20_02407 0.21 +0.2 2,540,516 + MPMX20_02407 0.32 +0.0 2,540,516 + MPMX20_02407 0.32 -1.0 2,540,524 - MPMX20_02407 0.32 -2.9 2,540,731 - MPMX20_02407 0.52 +0.1 2,540,735 + MPMX20_02407 0.52 +0.6 2,540,754 + MPMX20_02407 0.54 +2.2 2,540,754 + MPMX20_02407 0.54 +0.9 2,540,754 + MPMX20_02407 0.54 +0.4 2,540,754 + MPMX20_02407 0.54 -3.6 2,540,754 + MPMX20_02407 0.54 +0.7 2,540,754 + MPMX20_02407 0.54 +1.7 2,540,754 + MPMX20_02407 0.54 -1.1 2,540,754 + MPMX20_02407 0.54 -2.0 2,540,754 + MPMX20_02407 0.54 -1.8 2,540,754 + MPMX20_02407 0.54 +0.7 2,540,754 + MPMX20_02407 0.54 +0.3 2,540,754 + MPMX20_02407 0.54 -0.1 2,540,754 + MPMX20_02407 0.54 +0.3 2,540,754 + MPMX20_02407 0.54 +0.7 2,540,754 + MPMX20_02407 0.54 -2.6 2,540,754 + MPMX20_02407 0.54 -0.7 2,540,754 + MPMX20_02407 0.54 +1.3 2,540,754 + MPMX20_02407 0.54 +0.0 2,540,754 + MPMX20_02407 0.54 +0.9 2,540,754 + MPMX20_02407 0.54 -0.4 2,540,754 + MPMX20_02407 0.54 +0.4 2,540,762 - MPMX20_02407 0.55 +0.8 2,540,762 - MPMX20_02407 0.55 +2.6 2,540,762 - MPMX20_02407 0.55 -1.6 2,540,762 - MPMX20_02407 0.55 -0.3 2,540,762 - MPMX20_02407 0.55 -3.0 2,540,762 - MPMX20_02407 0.55 -0.9 2,540,762 - MPMX20_02407 0.55 -1.8 2,540,762 - MPMX20_02407 0.55 -0.5 2,540,762 - MPMX20_02407 0.55 -1.7 2,540,762 - MPMX20_02407 0.55 -0.2 2,540,762 - MPMX20_02407 0.55 +2.1 2,540,762 - MPMX20_02407 0.55 -0.6 2,540,762 - MPMX20_02407 0.55 -1.2 2,540,762 - MPMX20_02407 0.55 -2.6 2,540,762 - MPMX20_02407 0.55 -0.3 2,540,767 - MPMX20_02407 0.55 +1.4 2,540,772 + MPMX20_02407 0.56 -0.2 2,540,772 - MPMX20_02407 0.56 -0.8 2,540,801 - MPMX20_02407 0.58 +1.2 2,540,808 - MPMX20_02407 0.59 +0.3 2,540,848 + MPMX20_02407 0.63 -1.6 2,540,853 + MPMX20_02407 0.63 -0.4 2,540,866 - MPMX20_02407 0.65 -1.0 2,540,922 - MPMX20_02407 0.70 +0.8 2,541,010 - MPMX20_02407 0.78 +0.9 2,541,010 - MPMX20_02407 0.78 -1.4 2,541,025 - MPMX20_02407 0.79 -2.3 2,541,076 - MPMX20_02407 0.84 +0.6 2,541,090 - MPMX20_02407 0.86 +0.1
Or see this region's nucleotide sequence