Experiment: 0.1X LB plate, 1:1 coculture with Paenibacillus lautus 004-C1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01970 and MPMX20_01971 are separated by 118 nucleotides MPMX20_01971 and MPMX20_01972 are separated by 4 nucleotides MPMX20_01972 and MPMX20_01973 are separated by 153 nucleotides MPMX20_01973 and MPMX20_01974 are separated by 237 nucleotides MPMX20_01974 and MPMX20_01975 are separated by 28 nucleotides
MPMX20_01970: MPMX20_01970 - hypothetical protein, at 2,061,927 to 2,063,522
_01970
MPMX20_01971: MPMX20_01971 - tRNA-Val, at 2,063,641 to 2,063,717
_01971
MPMX20_01972: MPMX20_01972 - tRNA-Val, at 2,063,722 to 2,063,798
_01972
MPMX20_01973: MPMX20_01973 - Multidrug resistance protein MdtK, at 2,063,952 to 2,065,313
_01973
MPMX20_01974: MPMX20_01974 - Riboflavin synthase, at 2,065,551 to 2,066,192
_01974
MPMX20_01975: MPMX20_01975 - Cyclopropane-fatty-acyl-phospholipid synthase, at 2,066,221 to 2,067,369
_01975
Position (kb)
2063
2064
2065
2066 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 2062.976 kb on - strand, within MPMX20_01970 at 2062.976 kb on - strand, within MPMX20_01970 at 2062.976 kb on - strand, within MPMX20_01970 at 2062.981 kb on - strand, within MPMX20_01970 at 2063.023 kb on + strand, within MPMX20_01970 at 2063.028 kb on + strand, within MPMX20_01970 at 2063.028 kb on + strand, within MPMX20_01970 at 2063.046 kb on - strand, within MPMX20_01970 at 2063.174 kb on - strand, within MPMX20_01970 at 2063.174 kb on - strand, within MPMX20_01970 at 2063.274 kb on - strand, within MPMX20_01970 at 2063.300 kb on + strand, within MPMX20_01970 at 2063.308 kb on - strand, within MPMX20_01970 at 2063.409 kb on + strand at 2063.500 kb on - strand at 2063.500 kb on - strand at 2063.548 kb on + strand at 2063.645 kb on - strand at 2063.786 kb on - strand, within MPMX20_01972 at 2063.920 kb on - strand at 2063.982 kb on + strand at 2064.036 kb on + strand at 2064.044 kb on - strand at 2064.044 kb on - strand at 2064.097 kb on - strand, within MPMX20_01973 at 2064.118 kb on - strand, within MPMX20_01973 at 2064.187 kb on - strand, within MPMX20_01973 at 2064.187 kb on - strand, within MPMX20_01973 at 2064.212 kb on + strand, within MPMX20_01973 at 2064.220 kb on - strand, within MPMX20_01973 at 2064.220 kb on - strand, within MPMX20_01973 at 2064.300 kb on - strand, within MPMX20_01973 at 2064.337 kb on + strand, within MPMX20_01973 at 2064.343 kb on - strand, within MPMX20_01973 at 2064.607 kb on - strand, within MPMX20_01973 at 2064.692 kb on + strand, within MPMX20_01973 at 2064.706 kb on - strand, within MPMX20_01973 at 2064.835 kb on - strand, within MPMX20_01973 at 2064.878 kb on + strand, within MPMX20_01973 at 2064.906 kb on + strand, within MPMX20_01973 at 2064.914 kb on - strand, within MPMX20_01973 at 2064.916 kb on + strand, within MPMX20_01973 at 2064.924 kb on - strand, within MPMX20_01973 at 2064.924 kb on - strand, within MPMX20_01973 at 2064.924 kb on - strand, within MPMX20_01973 at 2064.947 kb on - strand, within MPMX20_01973 at 2064.947 kb on - strand, within MPMX20_01973 at 2064.995 kb on - strand, within MPMX20_01973 at 2065.015 kb on + strand, within MPMX20_01973 at 2065.018 kb on - strand, within MPMX20_01973 at 2065.023 kb on - strand, within MPMX20_01973 at 2065.096 kb on - strand, within MPMX20_01973 at 2065.175 kb on - strand, within MPMX20_01973 at 2065.220 kb on + strand at 2065.228 kb on - strand at 2065.234 kb on + strand at 2065.269 kb on + strand at 2065.276 kb on + strand at 2065.276 kb on + strand at 2065.276 kb on + strand at 2065.276 kb on + strand at 2065.276 kb on + strand at 2065.276 kb on + strand at 2065.276 kb on + strand at 2065.276 kb on + strand at 2065.276 kb on + strand at 2065.276 kb on + strand at 2065.277 kb on - strand at 2065.284 kb on - strand at 2065.284 kb on - strand at 2065.284 kb on - strand at 2065.289 kb on - strand at 2065.333 kb on + strand at 2065.371 kb on + strand at 2065.478 kb on + strand at 2066.126 kb on + strand, within MPMX20_01974 at 2066.126 kb on + strand, within MPMX20_01974 at 2066.134 kb on - strand at 2066.134 kb on - strand at 2066.136 kb on + strand at 2066.252 kb on - strand at 2066.252 kb on - strand at 2066.257 kb on + strand at 2066.265 kb on - strand at 2066.277 kb on + strand at 2066.300 kb on - strand at 2066.304 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Paenibacillus lautus 004-C1 remove 2,062,976 - MPMX20_01970 0.66 -0.7 2,062,976 - MPMX20_01970 0.66 +0.0 2,062,976 - MPMX20_01970 0.66 +1.5 2,062,981 - MPMX20_01970 0.66 +1.7 2,063,023 + MPMX20_01970 0.69 +0.4 2,063,028 + MPMX20_01970 0.69 +0.3 2,063,028 + MPMX20_01970 0.69 -1.3 2,063,046 - MPMX20_01970 0.70 +0.7 2,063,174 - MPMX20_01970 0.78 +0.7 2,063,174 - MPMX20_01970 0.78 +0.3 2,063,274 - MPMX20_01970 0.84 +0.8 2,063,300 + MPMX20_01970 0.86 +0.5 2,063,308 - MPMX20_01970 0.87 +0.4 2,063,409 + -0.9 2,063,500 - +0.6 2,063,500 - +0.1 2,063,548 + +0.6 2,063,645 - -1.4 2,063,786 - MPMX20_01972 0.83 -0.5 2,063,920 - -0.1 2,063,982 + +2.2 2,064,036 + +0.6 2,064,044 - +3.5 2,064,044 - +2.7 2,064,097 - MPMX20_01973 0.11 +3.8 2,064,118 - MPMX20_01973 0.12 +5.6 2,064,187 - MPMX20_01973 0.17 +3.9 2,064,187 - MPMX20_01973 0.17 +1.6 2,064,212 + MPMX20_01973 0.19 +1.9 2,064,220 - MPMX20_01973 0.20 +2.5 2,064,220 - MPMX20_01973 0.20 +2.4 2,064,300 - MPMX20_01973 0.26 +1.3 2,064,337 + MPMX20_01973 0.28 +3.0 2,064,343 - MPMX20_01973 0.29 +3.7 2,064,607 - MPMX20_01973 0.48 +3.3 2,064,692 + MPMX20_01973 0.54 +3.9 2,064,706 - MPMX20_01973 0.55 +2.9 2,064,835 - MPMX20_01973 0.65 +0.9 2,064,878 + MPMX20_01973 0.68 +3.0 2,064,906 + MPMX20_01973 0.70 +3.1 2,064,914 - MPMX20_01973 0.71 +3.1 2,064,916 + MPMX20_01973 0.71 +4.0 2,064,924 - MPMX20_01973 0.71 +3.4 2,064,924 - MPMX20_01973 0.71 +0.6 2,064,924 - MPMX20_01973 0.71 +5.1 2,064,947 - MPMX20_01973 0.73 +2.8 2,064,947 - MPMX20_01973 0.73 +3.8 2,064,995 - MPMX20_01973 0.77 +2.5 2,065,015 + MPMX20_01973 0.78 +3.2 2,065,018 - MPMX20_01973 0.78 +2.4 2,065,023 - MPMX20_01973 0.79 +3.6 2,065,096 - MPMX20_01973 0.84 +4.4 2,065,175 - MPMX20_01973 0.90 +4.6 2,065,220 + +2.2 2,065,228 - -0.2 2,065,234 + +3.2 2,065,269 + +2.5 2,065,276 + +3.6 2,065,276 + +2.4 2,065,276 + +0.7 2,065,276 + +3.1 2,065,276 + +0.8 2,065,276 + +4.2 2,065,276 + +2.5 2,065,276 + +2.4 2,065,276 + +2.9 2,065,276 + +1.5 2,065,277 - +2.4 2,065,284 - -1.1 2,065,284 - +0.1 2,065,284 - +2.9 2,065,289 - +3.5 2,065,333 + -1.5 2,065,371 + -0.1 2,065,478 + -0.9 2,066,126 + MPMX20_01974 0.90 -0.7 2,066,126 + MPMX20_01974 0.90 +0.4 2,066,134 - -0.2 2,066,134 - +0.2 2,066,136 + +0.8 2,066,252 - -0.6 2,066,252 - -3.5 2,066,257 + -0.4 2,066,265 - -2.3 2,066,277 + -2.0 2,066,300 - -1.0 2,066,304 - -2.7
Or see this region's nucleotide sequence