Experiment: 0.1X LB plate, 1:1 coculture with Paenibacillus lautus 004-C1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01959 and MPMX20_01960 overlap by 17 nucleotides MPMX20_01960 and MPMX20_01961 overlap by 1 nucleotides MPMX20_01961 and MPMX20_01962 are separated by 1 nucleotides
MPMX20_01959: MPMX20_01959 - putative glutamine ABC transporter permease protein GlnP, at 2,054,025 to 2,054,711
_01959
MPMX20_01960: MPMX20_01960 - Glutamate/aspartate import permease protein GltJ, at 2,054,695 to 2,055,441
_01960
MPMX20_01961: MPMX20_01961 - Glutamine transport ATP-binding protein GlnQ, at 2,055,441 to 2,056,256
_01961
MPMX20_01962: MPMX20_01962 - ABC transporter glutamine-binding protein GlnH, at 2,056,258 to 2,057,088
_01962
Position (kb)
2055
2056
2057 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2054.481 kb on + strand, within MPMX20_01959 at 2054.507 kb on - strand, within MPMX20_01959 at 2054.561 kb on - strand, within MPMX20_01959 at 2054.562 kb on + strand, within MPMX20_01959 at 2054.585 kb on + strand, within MPMX20_01959 at 2054.586 kb on + strand, within MPMX20_01959 at 2054.593 kb on - strand, within MPMX20_01959 at 2054.593 kb on - strand, within MPMX20_01959 at 2054.632 kb on + strand, within MPMX20_01959 at 2054.648 kb on - strand at 2054.656 kb on + strand at 2054.667 kb on - strand at 2054.693 kb on + strand at 2054.761 kb on - strand at 2054.763 kb on + strand at 2054.779 kb on + strand, within MPMX20_01960 at 2054.787 kb on - strand, within MPMX20_01960 at 2054.933 kb on + strand, within MPMX20_01960 at 2055.024 kb on + strand, within MPMX20_01960 at 2055.034 kb on - strand, within MPMX20_01960 at 2055.073 kb on + strand, within MPMX20_01960 at 2055.138 kb on + strand, within MPMX20_01960 at 2055.178 kb on + strand, within MPMX20_01960 at 2055.209 kb on + strand, within MPMX20_01960 at 2055.224 kb on + strand, within MPMX20_01960 at 2055.263 kb on - strand, within MPMX20_01960 at 2055.333 kb on - strand, within MPMX20_01960 at 2055.429 kb on - strand at 2055.449 kb on + strand at 2055.628 kb on + strand, within MPMX20_01961 at 2055.665 kb on - strand, within MPMX20_01961 at 2055.670 kb on - strand, within MPMX20_01961 at 2055.727 kb on + strand, within MPMX20_01961 at 2055.735 kb on - strand, within MPMX20_01961 at 2055.787 kb on + strand, within MPMX20_01961 at 2055.843 kb on + strand, within MPMX20_01961 at 2055.843 kb on + strand, within MPMX20_01961 at 2055.851 kb on - strand, within MPMX20_01961 at 2055.851 kb on - strand, within MPMX20_01961 at 2055.979 kb on + strand, within MPMX20_01961 at 2056.028 kb on + strand, within MPMX20_01961 at 2056.064 kb on + strand, within MPMX20_01961 at 2056.064 kb on + strand, within MPMX20_01961 at 2056.067 kb on - strand, within MPMX20_01961 at 2056.106 kb on - strand, within MPMX20_01961 at 2056.115 kb on + strand, within MPMX20_01961 at 2056.127 kb on + strand, within MPMX20_01961 at 2056.279 kb on - strand at 2056.287 kb on + strand at 2056.287 kb on + strand at 2056.290 kb on + strand at 2056.295 kb on - strand at 2056.379 kb on + strand, within MPMX20_01962 at 2056.379 kb on + strand, within MPMX20_01962 at 2056.379 kb on + strand, within MPMX20_01962 at 2056.379 kb on + strand, within MPMX20_01962 at 2056.387 kb on - strand, within MPMX20_01962 at 2056.435 kb on - strand, within MPMX20_01962 at 2056.505 kb on - strand, within MPMX20_01962 at 2056.505 kb on - strand, within MPMX20_01962 at 2056.507 kb on + strand, within MPMX20_01962 at 2056.507 kb on + strand, within MPMX20_01962 at 2056.514 kb on + strand, within MPMX20_01962 at 2056.515 kb on - strand, within MPMX20_01962 at 2056.515 kb on - strand, within MPMX20_01962 at 2056.520 kb on + strand, within MPMX20_01962 at 2056.616 kb on - strand, within MPMX20_01962 at 2056.662 kb on - strand, within MPMX20_01962 at 2056.662 kb on - strand, within MPMX20_01962 at 2056.770 kb on - strand, within MPMX20_01962 at 2056.902 kb on + strand, within MPMX20_01962 at 2057.008 kb on - strand at 2057.069 kb on + strand at 2057.114 kb on + strand at 2057.114 kb on + strand at 2057.114 kb on + strand at 2057.122 kb on - strand at 2057.140 kb on - strand at 2057.203 kb on + strand at 2057.250 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Paenibacillus lautus 004-C1 remove 2,054,481 + MPMX20_01959 0.66 +0.6 2,054,507 - MPMX20_01959 0.70 -0.5 2,054,561 - MPMX20_01959 0.78 -1.9 2,054,562 + MPMX20_01959 0.78 -0.2 2,054,585 + MPMX20_01959 0.82 -0.7 2,054,586 + MPMX20_01959 0.82 +0.9 2,054,593 - MPMX20_01959 0.83 +0.2 2,054,593 - MPMX20_01959 0.83 -1.1 2,054,632 + MPMX20_01959 0.88 -0.5 2,054,648 - -0.5 2,054,656 + +1.1 2,054,667 - -1.6 2,054,693 + +0.1 2,054,761 - +0.2 2,054,763 + -2.6 2,054,779 + MPMX20_01960 0.11 +0.5 2,054,787 - MPMX20_01960 0.12 -1.9 2,054,933 + MPMX20_01960 0.32 +1.4 2,055,024 + MPMX20_01960 0.44 +0.4 2,055,034 - MPMX20_01960 0.45 -0.4 2,055,073 + MPMX20_01960 0.51 +0.5 2,055,138 + MPMX20_01960 0.59 -1.5 2,055,178 + MPMX20_01960 0.65 -0.4 2,055,209 + MPMX20_01960 0.69 +1.4 2,055,224 + MPMX20_01960 0.71 -0.3 2,055,263 - MPMX20_01960 0.76 -0.7 2,055,333 - MPMX20_01960 0.85 -1.0 2,055,429 - -0.2 2,055,449 + +0.8 2,055,628 + MPMX20_01961 0.23 -1.1 2,055,665 - MPMX20_01961 0.27 -2.5 2,055,670 - MPMX20_01961 0.28 -1.8 2,055,727 + MPMX20_01961 0.35 +3.4 2,055,735 - MPMX20_01961 0.36 +1.9 2,055,787 + MPMX20_01961 0.42 -0.7 2,055,843 + MPMX20_01961 0.49 -1.3 2,055,843 + MPMX20_01961 0.49 +0.3 2,055,851 - MPMX20_01961 0.50 -2.8 2,055,851 - MPMX20_01961 0.50 -1.1 2,055,979 + MPMX20_01961 0.66 -1.9 2,056,028 + MPMX20_01961 0.72 +0.8 2,056,064 + MPMX20_01961 0.76 +0.7 2,056,064 + MPMX20_01961 0.76 -1.1 2,056,067 - MPMX20_01961 0.77 -2.6 2,056,106 - MPMX20_01961 0.81 -0.6 2,056,115 + MPMX20_01961 0.83 -0.7 2,056,127 + MPMX20_01961 0.84 -1.8 2,056,279 - -2.2 2,056,287 + -1.6 2,056,287 + -0.8 2,056,290 + +0.9 2,056,295 - +0.1 2,056,379 + MPMX20_01962 0.15 +0.9 2,056,379 + MPMX20_01962 0.15 +1.4 2,056,379 + MPMX20_01962 0.15 +0.4 2,056,379 + MPMX20_01962 0.15 -1.2 2,056,387 - MPMX20_01962 0.16 -0.6 2,056,435 - MPMX20_01962 0.21 -1.7 2,056,505 - MPMX20_01962 0.30 -2.1 2,056,505 - MPMX20_01962 0.30 -0.4 2,056,507 + MPMX20_01962 0.30 +1.0 2,056,507 + MPMX20_01962 0.30 +1.0 2,056,514 + MPMX20_01962 0.31 +0.8 2,056,515 - MPMX20_01962 0.31 -0.7 2,056,515 - MPMX20_01962 0.31 +0.4 2,056,520 + MPMX20_01962 0.32 -0.3 2,056,616 - MPMX20_01962 0.43 -2.1 2,056,662 - MPMX20_01962 0.49 -2.8 2,056,662 - MPMX20_01962 0.49 -1.5 2,056,770 - MPMX20_01962 0.62 -1.3 2,056,902 + MPMX20_01962 0.77 -2.8 2,057,008 - +0.2 2,057,069 + -1.3 2,057,114 + -0.1 2,057,114 + +1.5 2,057,114 + -0.8 2,057,122 - -0.4 2,057,140 - +2.4 2,057,203 + +0.4 2,057,250 + +1.9
Or see this region's nucleotide sequence