Experiment: 0.1X LB plate, 1:1 coculture with Paenibacillus lautus 004-C1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01055 and MPMX20_01056 are separated by 208 nucleotides MPMX20_01056 and MPMX20_01057 are separated by 2 nucleotides MPMX20_01057 and MPMX20_01058 overlap by 4 nucleotides MPMX20_01058 and MPMX20_01059 are separated by 100 nucleotides
MPMX20_01055: MPMX20_01055 - putative cyclic di-GMP phosphodiesterase PdeB, at 1,111,363 to 1,112,928
_01055
MPMX20_01056: MPMX20_01056 - 50S ribosomal protein L31 type B, at 1,113,137 to 1,113,397
_01056
MPMX20_01057: MPMX20_01057 - 50S ribosomal protein L36 2, at 1,113,400 to 1,113,540
_01057
MPMX20_01058: MPMX20_01058 - hypothetical protein, at 1,113,537 to 1,114,247
_01058
MPMX20_01059: MPMX20_01059 - HTH-type transcriptional regulatory protein GabR, at 1,114,348 to 1,115,808
_01059
Position (kb)
1113
1114 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1112.451 kb on + strand, within MPMX20_01055 at 1112.466 kb on + strand, within MPMX20_01055 at 1112.474 kb on - strand, within MPMX20_01055 at 1112.493 kb on - strand, within MPMX20_01055 at 1112.530 kb on + strand, within MPMX20_01055 at 1112.582 kb on - strand, within MPMX20_01055 at 1112.596 kb on + strand, within MPMX20_01055 at 1112.604 kb on - strand, within MPMX20_01055 at 1112.630 kb on - strand, within MPMX20_01055 at 1112.696 kb on - strand, within MPMX20_01055 at 1112.725 kb on + strand, within MPMX20_01055 at 1112.726 kb on - strand, within MPMX20_01055 at 1112.748 kb on + strand, within MPMX20_01055 at 1112.801 kb on - strand at 1112.896 kb on + strand at 1112.908 kb on + strand at 1113.019 kb on - strand at 1113.020 kb on - strand at 1113.046 kb on + strand at 1113.067 kb on + strand at 1113.158 kb on + strand at 1113.158 kb on + strand at 1113.158 kb on + strand at 1113.166 kb on - strand, within MPMX20_01056 at 1113.220 kb on + strand, within MPMX20_01056 at 1113.220 kb on + strand, within MPMX20_01056 at 1113.301 kb on + strand, within MPMX20_01056 at 1113.309 kb on - strand, within MPMX20_01056 at 1113.309 kb on - strand, within MPMX20_01056 at 1113.337 kb on + strand, within MPMX20_01056 at 1113.425 kb on + strand, within MPMX20_01057 at 1113.425 kb on + strand, within MPMX20_01057 at 1113.433 kb on - strand, within MPMX20_01057 at 1113.433 kb on - strand, within MPMX20_01057 at 1113.433 kb on - strand, within MPMX20_01057 at 1113.433 kb on - strand, within MPMX20_01057 at 1113.433 kb on - strand, within MPMX20_01057 at 1113.514 kb on + strand, within MPMX20_01057 at 1113.514 kb on + strand, within MPMX20_01057 at 1113.638 kb on - strand, within MPMX20_01058 at 1113.681 kb on + strand, within MPMX20_01058 at 1113.800 kb on + strand, within MPMX20_01058 at 1113.800 kb on + strand, within MPMX20_01058 at 1113.800 kb on + strand, within MPMX20_01058 at 1113.800 kb on + strand, within MPMX20_01058 at 1113.808 kb on - strand, within MPMX20_01058 at 1113.808 kb on - strand, within MPMX20_01058 at 1113.857 kb on + strand, within MPMX20_01058 at 1113.887 kb on - strand, within MPMX20_01058 at 1113.896 kb on + strand, within MPMX20_01058 at 1113.912 kb on + strand, within MPMX20_01058 at 1113.912 kb on + strand, within MPMX20_01058 at 1113.912 kb on + strand, within MPMX20_01058 at 1114.007 kb on - strand, within MPMX20_01058 at 1114.017 kb on - strand, within MPMX20_01058 at 1114.017 kb on - strand, within MPMX20_01058 at 1114.039 kb on - strand, within MPMX20_01058 at 1114.039 kb on - strand, within MPMX20_01058 at 1114.107 kb on - strand, within MPMX20_01058 at 1114.107 kb on - strand, within MPMX20_01058 at 1114.213 kb on + strand at 1114.431 kb on + strand at 1114.431 kb on + strand at 1114.439 kb on - strand at 1114.493 kb on + strand at 1114.515 kb on + strand, within MPMX20_01059 at 1114.523 kb on - strand, within MPMX20_01059
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Paenibacillus lautus 004-C1 remove 1,112,451 + MPMX20_01055 0.69 -1.1 1,112,466 + MPMX20_01055 0.70 -0.7 1,112,474 - MPMX20_01055 0.71 -1.2 1,112,493 - MPMX20_01055 0.72 +0.8 1,112,530 + MPMX20_01055 0.75 -3.5 1,112,582 - MPMX20_01055 0.78 -0.7 1,112,596 + MPMX20_01055 0.79 -1.0 1,112,604 - MPMX20_01055 0.79 +0.5 1,112,630 - MPMX20_01055 0.81 +1.3 1,112,696 - MPMX20_01055 0.85 -0.0 1,112,725 + MPMX20_01055 0.87 -0.7 1,112,726 - MPMX20_01055 0.87 +0.2 1,112,748 + MPMX20_01055 0.88 -1.0 1,112,801 - +0.7 1,112,896 + -0.3 1,112,908 + -1.2 1,113,019 - +0.3 1,113,020 - -1.0 1,113,046 + -0.3 1,113,067 + -0.9 1,113,158 + +0.9 1,113,158 + +0.7 1,113,158 + -1.5 1,113,166 - MPMX20_01056 0.11 -1.6 1,113,220 + MPMX20_01056 0.32 +3.1 1,113,220 + MPMX20_01056 0.32 -1.6 1,113,301 + MPMX20_01056 0.63 +1.4 1,113,309 - MPMX20_01056 0.66 -0.0 1,113,309 - MPMX20_01056 0.66 -2.6 1,113,337 + MPMX20_01056 0.77 +1.7 1,113,425 + MPMX20_01057 0.18 +1.2 1,113,425 + MPMX20_01057 0.18 +0.3 1,113,433 - MPMX20_01057 0.23 +1.3 1,113,433 - MPMX20_01057 0.23 -0.0 1,113,433 - MPMX20_01057 0.23 +1.4 1,113,433 - MPMX20_01057 0.23 -3.9 1,113,433 - MPMX20_01057 0.23 -2.0 1,113,514 + MPMX20_01057 0.81 +1.7 1,113,514 + MPMX20_01057 0.81 +0.9 1,113,638 - MPMX20_01058 0.14 +0.7 1,113,681 + MPMX20_01058 0.20 -1.0 1,113,800 + MPMX20_01058 0.37 -2.5 1,113,800 + MPMX20_01058 0.37 -0.3 1,113,800 + MPMX20_01058 0.37 +0.3 1,113,800 + MPMX20_01058 0.37 -1.6 1,113,808 - MPMX20_01058 0.38 -2.0 1,113,808 - MPMX20_01058 0.38 +0.3 1,113,857 + MPMX20_01058 0.45 -1.5 1,113,887 - MPMX20_01058 0.49 -0.9 1,113,896 + MPMX20_01058 0.50 -0.7 1,113,912 + MPMX20_01058 0.53 -2.1 1,113,912 + MPMX20_01058 0.53 +1.3 1,113,912 + MPMX20_01058 0.53 +0.6 1,114,007 - MPMX20_01058 0.66 +0.2 1,114,017 - MPMX20_01058 0.68 -2.0 1,114,017 - MPMX20_01058 0.68 +3.4 1,114,039 - MPMX20_01058 0.71 -1.0 1,114,039 - MPMX20_01058 0.71 -1.2 1,114,107 - MPMX20_01058 0.80 +1.6 1,114,107 - MPMX20_01058 0.80 -1.2 1,114,213 + -0.9 1,114,431 + -2.9 1,114,431 + -0.3 1,114,439 - +0.6 1,114,493 + +0.3 1,114,515 + MPMX20_01059 0.11 -1.0 1,114,523 - MPMX20_01059 0.12 +0.6
Or see this region's nucleotide sequence