Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00904

Experiment: 0.1X LB plate, 1:1 coculture with Paenibacillus lautus 004-C1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00903 and MPMX20_00904 overlap by 4 nucleotidesMPMX20_00904 and MPMX20_00905 are separated by 2 nucleotides MPMX20_00903: MPMX20_00903 - Oligopeptide transport ATP-binding protein OppD, at 950,042 to 951,055 _00903 MPMX20_00904: MPMX20_00904 - Vitamin B12 import ATP-binding protein BtuD, at 951,052 to 952,134 _00904 MPMX20_00905: MPMX20_00905 - Glutathione-binding protein GsiB, at 952,137 to 953,651 _00905 Position (kb) 951 952 953Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 950.070 kb on + strandat 950.073 kb on - strandat 950.073 kb on - strandat 950.080 kb on - strandat 950.112 kb on + strandat 950.120 kb on - strandat 950.184 kb on - strand, within MPMX20_00903at 950.219 kb on - strand, within MPMX20_00903at 950.373 kb on - strand, within MPMX20_00903at 950.373 kb on - strand, within MPMX20_00903at 950.384 kb on - strand, within MPMX20_00903at 950.395 kb on + strand, within MPMX20_00903at 950.408 kb on - strand, within MPMX20_00903at 950.473 kb on + strand, within MPMX20_00903at 950.474 kb on + strand, within MPMX20_00903at 950.482 kb on - strand, within MPMX20_00903at 950.599 kb on + strand, within MPMX20_00903at 950.607 kb on - strand, within MPMX20_00903at 950.614 kb on + strand, within MPMX20_00903at 950.637 kb on + strand, within MPMX20_00903at 950.645 kb on - strand, within MPMX20_00903at 950.647 kb on + strand, within MPMX20_00903at 950.647 kb on + strand, within MPMX20_00903at 950.647 kb on + strand, within MPMX20_00903at 950.655 kb on - strand, within MPMX20_00903at 950.655 kb on - strand, within MPMX20_00903at 950.655 kb on - strand, within MPMX20_00903at 950.655 kb on - strand, within MPMX20_00903at 950.655 kb on - strand, within MPMX20_00903at 950.655 kb on - strand, within MPMX20_00903at 950.708 kb on - strand, within MPMX20_00903at 950.762 kb on + strand, within MPMX20_00903at 950.762 kb on + strand, within MPMX20_00903at 950.767 kb on + strand, within MPMX20_00903at 950.770 kb on - strand, within MPMX20_00903at 950.770 kb on - strand, within MPMX20_00903at 950.803 kb on + strand, within MPMX20_00903at 950.803 kb on + strand, within MPMX20_00903at 950.811 kb on + strand, within MPMX20_00903at 950.811 kb on + strand, within MPMX20_00903at 950.811 kb on + strand, within MPMX20_00903at 950.811 kb on - strand, within MPMX20_00903at 950.819 kb on - strand, within MPMX20_00903at 950.819 kb on - strand, within MPMX20_00903at 950.819 kb on - strand, within MPMX20_00903at 950.819 kb on - strand, within MPMX20_00903at 950.926 kb on + strand, within MPMX20_00903at 950.991 kb on + strandat 951.028 kb on + strandat 951.073 kb on + strandat 951.092 kb on - strandat 951.173 kb on + strand, within MPMX20_00904at 951.180 kb on - strand, within MPMX20_00904at 951.225 kb on - strand, within MPMX20_00904at 951.277 kb on + strand, within MPMX20_00904at 951.307 kb on + strand, within MPMX20_00904at 951.315 kb on - strand, within MPMX20_00904at 951.316 kb on - strand, within MPMX20_00904at 951.409 kb on + strand, within MPMX20_00904at 951.410 kb on + strand, within MPMX20_00904at 951.410 kb on + strand, within MPMX20_00904at 951.410 kb on + strand, within MPMX20_00904at 951.418 kb on - strand, within MPMX20_00904at 951.418 kb on - strand, within MPMX20_00904at 951.418 kb on - strand, within MPMX20_00904at 951.462 kb on + strand, within MPMX20_00904at 951.462 kb on + strand, within MPMX20_00904at 951.462 kb on + strand, within MPMX20_00904at 951.470 kb on + strand, within MPMX20_00904at 951.470 kb on + strand, within MPMX20_00904at 951.470 kb on - strand, within MPMX20_00904at 951.485 kb on - strand, within MPMX20_00904at 951.492 kb on + strand, within MPMX20_00904at 951.523 kb on + strand, within MPMX20_00904at 951.574 kb on - strand, within MPMX20_00904at 951.691 kb on + strand, within MPMX20_00904at 951.693 kb on - strand, within MPMX20_00904at 951.716 kb on - strand, within MPMX20_00904at 951.716 kb on - strand, within MPMX20_00904at 951.740 kb on - strand, within MPMX20_00904at 951.803 kb on - strand, within MPMX20_00904at 951.807 kb on + strand, within MPMX20_00904at 951.845 kb on - strand, within MPMX20_00904at 951.958 kb on - strand, within MPMX20_00904at 951.968 kb on + strand, within MPMX20_00904at 952.018 kb on - strand, within MPMX20_00904at 952.034 kb on + strandat 952.044 kb on - strandat 952.084 kb on - strandat 952.086 kb on + strandat 952.097 kb on + strandat 952.097 kb on + strandat 952.174 kb on + strandat 952.174 kb on + strandat 952.182 kb on - strandat 952.182 kb on - strandat 952.182 kb on - strandat 952.182 kb on - strandat 952.182 kb on - strandat 952.182 kb on - strandat 952.182 kb on - strandat 952.184 kb on + strandat 952.197 kb on - strandat 952.216 kb on + strandat 952.224 kb on - strandat 952.237 kb on - strandat 952.237 kb on - strandat 952.345 kb on - strand, within MPMX20_00905at 952.364 kb on + strand, within MPMX20_00905at 952.372 kb on - strand, within MPMX20_00905at 952.399 kb on + strand, within MPMX20_00905at 952.399 kb on + strand, within MPMX20_00905at 952.399 kb on + strand, within MPMX20_00905at 952.407 kb on - strand, within MPMX20_00905at 952.407 kb on - strand, within MPMX20_00905at 952.407 kb on - strand, within MPMX20_00905at 952.407 kb on - strand, within MPMX20_00905at 952.407 kb on - strand, within MPMX20_00905at 952.407 kb on - strand, within MPMX20_00905at 952.424 kb on - strand, within MPMX20_00905at 952.424 kb on - strand, within MPMX20_00905at 952.494 kb on - strand, within MPMX20_00905at 952.496 kb on - strand, within MPMX20_00905at 952.528 kb on + strand, within MPMX20_00905at 952.546 kb on - strand, within MPMX20_00905at 952.546 kb on - strand, within MPMX20_00905at 952.554 kb on - strand, within MPMX20_00905at 952.675 kb on + strand, within MPMX20_00905at 952.675 kb on + strand, within MPMX20_00905at 952.675 kb on + strand, within MPMX20_00905at 952.675 kb on + strand, within MPMX20_00905at 952.683 kb on - strand, within MPMX20_00905at 952.683 kb on - strand, within MPMX20_00905at 952.683 kb on - strand, within MPMX20_00905at 952.683 kb on - strand, within MPMX20_00905at 952.683 kb on - strand, within MPMX20_00905at 952.712 kb on + strand, within MPMX20_00905at 952.714 kb on + strand, within MPMX20_00905at 952.717 kb on + strand, within MPMX20_00905at 952.756 kb on + strand, within MPMX20_00905at 952.802 kb on - strand, within MPMX20_00905at 952.904 kb on + strand, within MPMX20_00905at 952.979 kb on + strand, within MPMX20_00905at 952.987 kb on - strand, within MPMX20_00905at 953.027 kb on - strand, within MPMX20_00905at 953.046 kb on + strand, within MPMX20_00905at 953.057 kb on + strand, within MPMX20_00905at 953.058 kb on + strand, within MPMX20_00905at 953.065 kb on - strand, within MPMX20_00905

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Paenibacillus lautus 004-C1
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950,070 + +0.4
950,073 - -0.9
950,073 - +2.8
950,080 - -1.3
950,112 + -2.6
950,120 - -0.9
950,184 - MPMX20_00903 0.14 -0.8
950,219 - MPMX20_00903 0.17 +0.7
950,373 - MPMX20_00903 0.33 +1.5
950,373 - MPMX20_00903 0.33 +1.3
950,384 - MPMX20_00903 0.34 -1.9
950,395 + MPMX20_00903 0.35 -0.8
950,408 - MPMX20_00903 0.36 -1.3
950,473 + MPMX20_00903 0.43 -2.7
950,474 + MPMX20_00903 0.43 -2.2
950,482 - MPMX20_00903 0.43 -1.0
950,599 + MPMX20_00903 0.55 +1.9
950,607 - MPMX20_00903 0.56 -1.9
950,614 + MPMX20_00903 0.56 -0.2
950,637 + MPMX20_00903 0.59 -2.8
950,645 - MPMX20_00903 0.59 -2.9
950,647 + MPMX20_00903 0.60 -0.5
950,647 + MPMX20_00903 0.60 -0.6
950,647 + MPMX20_00903 0.60 -0.9
950,655 - MPMX20_00903 0.60 -0.4
950,655 - MPMX20_00903 0.60 -1.3
950,655 - MPMX20_00903 0.60 -1.2
950,655 - MPMX20_00903 0.60 +0.9
950,655 - MPMX20_00903 0.60 -1.0
950,655 - MPMX20_00903 0.60 -0.6
950,708 - MPMX20_00903 0.66 -0.3
950,762 + MPMX20_00903 0.71 -0.0
950,762 + MPMX20_00903 0.71 -0.2
950,767 + MPMX20_00903 0.71 -1.0
950,770 - MPMX20_00903 0.72 -0.3
950,770 - MPMX20_00903 0.72 +2.3
950,803 + MPMX20_00903 0.75 +0.6
950,803 + MPMX20_00903 0.75 -0.8
950,811 + MPMX20_00903 0.76 -1.3
950,811 + MPMX20_00903 0.76 +0.8
950,811 + MPMX20_00903 0.76 -2.9
950,811 - MPMX20_00903 0.76 -2.0
950,819 - MPMX20_00903 0.77 +1.2
950,819 - MPMX20_00903 0.77 +0.1
950,819 - MPMX20_00903 0.77 -0.7
950,819 - MPMX20_00903 0.77 -3.6
950,926 + MPMX20_00903 0.87 -1.9
950,991 + -0.7
951,028 + +1.5
951,073 + -1.3
951,092 - +0.8
951,173 + MPMX20_00904 0.11 +1.1
951,180 - MPMX20_00904 0.12 -1.2
951,225 - MPMX20_00904 0.16 +0.5
951,277 + MPMX20_00904 0.21 +1.5
951,307 + MPMX20_00904 0.24 +1.7
951,315 - MPMX20_00904 0.24 -0.2
951,316 - MPMX20_00904 0.24 +0.3
951,409 + MPMX20_00904 0.33 +0.3
951,410 + MPMX20_00904 0.33 -1.9
951,410 + MPMX20_00904 0.33 -0.5
951,410 + MPMX20_00904 0.33 +0.7
951,418 - MPMX20_00904 0.34 -1.1
951,418 - MPMX20_00904 0.34 +0.2
951,418 - MPMX20_00904 0.34 -2.1
951,462 + MPMX20_00904 0.38 -2.6
951,462 + MPMX20_00904 0.38 +1.8
951,462 + MPMX20_00904 0.38 -1.4
951,470 + MPMX20_00904 0.39 -0.5
951,470 + MPMX20_00904 0.39 -0.5
951,470 - MPMX20_00904 0.39 -1.3
951,485 - MPMX20_00904 0.40 +0.1
951,492 + MPMX20_00904 0.41 -0.0
951,523 + MPMX20_00904 0.43 -0.2
951,574 - MPMX20_00904 0.48 -0.2
951,691 + MPMX20_00904 0.59 +0.3
951,693 - MPMX20_00904 0.59 +1.9
951,716 - MPMX20_00904 0.61 +1.8
951,716 - MPMX20_00904 0.61 -3.0
951,740 - MPMX20_00904 0.64 +1.3
951,803 - MPMX20_00904 0.69 +0.6
951,807 + MPMX20_00904 0.70 +1.3
951,845 - MPMX20_00904 0.73 +1.1
951,958 - MPMX20_00904 0.84 -0.0
951,968 + MPMX20_00904 0.85 -1.5
952,018 - MPMX20_00904 0.89 -3.4
952,034 + -0.1
952,044 - +0.7
952,084 - -0.4
952,086 + +1.1
952,097 + -0.8
952,097 + -1.8
952,174 + -0.8
952,174 + -0.3
952,182 - +0.0
952,182 - -0.9
952,182 - +1.9
952,182 - -0.9
952,182 - +0.7
952,182 - -0.4
952,182 - +1.4
952,184 + -0.5
952,197 - -2.4
952,216 + -0.0
952,224 - -0.2
952,237 - -2.2
952,237 - -2.2
952,345 - MPMX20_00905 0.14 -0.7
952,364 + MPMX20_00905 0.15 -0.2
952,372 - MPMX20_00905 0.16 +1.3
952,399 + MPMX20_00905 0.17 -0.9
952,399 + MPMX20_00905 0.17 -2.5
952,399 + MPMX20_00905 0.17 -2.1
952,407 - MPMX20_00905 0.18 +0.1
952,407 - MPMX20_00905 0.18 -1.1
952,407 - MPMX20_00905 0.18 -0.7
952,407 - MPMX20_00905 0.18 +0.0
952,407 - MPMX20_00905 0.18 -1.5
952,407 - MPMX20_00905 0.18 +1.0
952,424 - MPMX20_00905 0.19 -0.3
952,424 - MPMX20_00905 0.19 -1.6
952,494 - MPMX20_00905 0.24 +2.3
952,496 - MPMX20_00905 0.24 -0.6
952,528 + MPMX20_00905 0.26 +0.3
952,546 - MPMX20_00905 0.27 +1.0
952,546 - MPMX20_00905 0.27 +0.5
952,554 - MPMX20_00905 0.28 +0.5
952,675 + MPMX20_00905 0.36 -1.0
952,675 + MPMX20_00905 0.36 +0.1
952,675 + MPMX20_00905 0.36 +2.3
952,675 + MPMX20_00905 0.36 -0.3
952,683 - MPMX20_00905 0.36 -0.0
952,683 - MPMX20_00905 0.36 -1.6
952,683 - MPMX20_00905 0.36 -1.2
952,683 - MPMX20_00905 0.36 -1.0
952,683 - MPMX20_00905 0.36 -0.3
952,712 + MPMX20_00905 0.38 +2.3
952,714 + MPMX20_00905 0.38 -0.7
952,717 + MPMX20_00905 0.38 -0.1
952,756 + MPMX20_00905 0.41 -0.2
952,802 - MPMX20_00905 0.44 -0.0
952,904 + MPMX20_00905 0.51 -2.8
952,979 + MPMX20_00905 0.56 -1.4
952,987 - MPMX20_00905 0.56 -0.3
953,027 - MPMX20_00905 0.59 +0.3
953,046 + MPMX20_00905 0.60 -1.9
953,057 + MPMX20_00905 0.61 -0.9
953,058 + MPMX20_00905 0.61 +0.7
953,065 - MPMX20_00905 0.61 -0.7

Or see this region's nucleotide sequence