Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00211

Experiment: 0.1X LB plate, 1:1 coculture with Paenibacillus lautus 004-C1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00208 and MPMX20_00209 are separated by 59 nucleotidesMPMX20_00209 and MPMX20_00210 are separated by 3 nucleotidesMPMX20_00210 and MPMX20_00211 are separated by 180 nucleotidesMPMX20_00211 and MPMX20_00212 are separated by 329 nucleotides MPMX20_00208: MPMX20_00208 - DNA-directed RNA polymerase subunit beta', at 215,241 to 219,464 _00208 MPMX20_00209: MPMX20_00209 - PTS system N,N'-diacetylchitobiose-specific EIIA component, at 219,524 to 219,841 _00209 MPMX20_00210: MPMX20_00210 - PTS system cellobiose-specific EIIB component, at 219,845 to 220,150 _00210 MPMX20_00211: MPMX20_00211 - hypothetical protein, at 220,331 to 221,872 _00211 MPMX20_00212: MPMX20_00212 - 2-iminoacetate synthase, at 222,202 to 223,335 _00212 Position (kb) 220 221 222Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 219.438 kb on + strandat 219.443 kb on + strandat 219.549 kb on - strandat 219.591 kb on + strand, within MPMX20_00209at 219.604 kb on + strand, within MPMX20_00209at 219.610 kb on - strand, within MPMX20_00209at 219.629 kb on - strand, within MPMX20_00209at 219.665 kb on + strand, within MPMX20_00209at 219.668 kb on - strand, within MPMX20_00209at 219.688 kb on + strand, within MPMX20_00209at 219.783 kb on - strand, within MPMX20_00209at 219.783 kb on - strand, within MPMX20_00209at 219.788 kb on - strand, within MPMX20_00209at 219.800 kb on - strand, within MPMX20_00209at 219.893 kb on - strand, within MPMX20_00210at 219.957 kb on + strand, within MPMX20_00210at 219.965 kb on - strand, within MPMX20_00210at 219.998 kb on + strand, within MPMX20_00210at 220.052 kb on - strand, within MPMX20_00210at 220.100 kb on - strand, within MPMX20_00210at 220.156 kb on + strandat 220.314 kb on + strandat 220.358 kb on + strandat 220.366 kb on - strandat 220.372 kb on + strandat 220.380 kb on - strandat 220.397 kb on - strandat 220.444 kb on + strandat 220.444 kb on + strandat 220.452 kb on - strandat 220.457 kb on - strandat 220.505 kb on + strand, within MPMX20_00211at 220.508 kb on - strand, within MPMX20_00211at 220.548 kb on + strand, within MPMX20_00211at 220.548 kb on + strand, within MPMX20_00211at 220.548 kb on + strand, within MPMX20_00211at 220.640 kb on + strand, within MPMX20_00211at 220.645 kb on + strand, within MPMX20_00211at 220.686 kb on + strand, within MPMX20_00211at 220.709 kb on - strand, within MPMX20_00211at 220.851 kb on + strand, within MPMX20_00211at 220.859 kb on - strand, within MPMX20_00211at 220.859 kb on - strand, within MPMX20_00211at 220.902 kb on - strand, within MPMX20_00211at 221.008 kb on - strand, within MPMX20_00211at 221.013 kb on - strand, within MPMX20_00211at 221.033 kb on + strand, within MPMX20_00211at 221.076 kb on + strand, within MPMX20_00211at 221.096 kb on - strand, within MPMX20_00211at 221.202 kb on + strand, within MPMX20_00211at 221.254 kb on - strand, within MPMX20_00211at 221.254 kb on - strand, within MPMX20_00211at 221.259 kb on + strand, within MPMX20_00211at 221.269 kb on + strand, within MPMX20_00211at 221.269 kb on + strand, within MPMX20_00211at 221.275 kb on + strand, within MPMX20_00211at 221.277 kb on - strand, within MPMX20_00211at 221.277 kb on - strand, within MPMX20_00211at 221.377 kb on + strand, within MPMX20_00211at 221.399 kb on - strand, within MPMX20_00211at 221.582 kb on + strand, within MPMX20_00211at 221.588 kb on + strand, within MPMX20_00211at 221.590 kb on - strand, within MPMX20_00211at 221.784 kb on + strandat 221.790 kb on - strandat 221.794 kb on + strandat 221.794 kb on + strandat 221.794 kb on + strandat 221.794 kb on + strandat 221.794 kb on + strandat 221.794 kb on + strandat 221.794 kb on + strandat 221.802 kb on - strandat 221.802 kb on - strandat 221.802 kb on - strandat 221.802 kb on - strandat 221.823 kb on - strandat 221.868 kb on + strandat 221.875 kb on + strandat 221.876 kb on - strandat 221.883 kb on - strandat 221.920 kb on - strandat 221.925 kb on + strandat 221.927 kb on + strandat 221.938 kb on + strandat 221.938 kb on + strandat 221.938 kb on + strandat 221.946 kb on - strandat 222.017 kb on + strandat 222.048 kb on + strandat 222.048 kb on + strandat 222.056 kb on - strandat 222.056 kb on - strandat 222.056 kb on - strandat 222.096 kb on - strandat 222.096 kb on - strandat 222.221 kb on + strandat 222.243 kb on - strandat 222.245 kb on + strandat 222.255 kb on + strandat 222.281 kb on + strandat 222.410 kb on - strand, within MPMX20_00212at 222.525 kb on + strand, within MPMX20_00212at 222.546 kb on + strand, within MPMX20_00212at 222.599 kb on + strand, within MPMX20_00212at 222.629 kb on - strand, within MPMX20_00212at 222.696 kb on + strand, within MPMX20_00212at 222.831 kb on + strand, within MPMX20_00212at 222.839 kb on - strand, within MPMX20_00212at 222.853 kb on + strand, within MPMX20_00212

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Paenibacillus lautus 004-C1
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219,438 + +0.0
219,443 + +1.0
219,549 - -1.8
219,591 + MPMX20_00209 0.21 -3.6
219,604 + MPMX20_00209 0.25 -0.5
219,610 - MPMX20_00209 0.27 +0.7
219,629 - MPMX20_00209 0.33 -1.3
219,665 + MPMX20_00209 0.44 -0.8
219,668 - MPMX20_00209 0.45 -2.9
219,688 + MPMX20_00209 0.52 -0.8
219,783 - MPMX20_00209 0.81 +0.7
219,783 - MPMX20_00209 0.81 +1.2
219,788 - MPMX20_00209 0.83 +0.9
219,800 - MPMX20_00209 0.87 -0.4
219,893 - MPMX20_00210 0.16 +1.2
219,957 + MPMX20_00210 0.37 -2.6
219,965 - MPMX20_00210 0.39 +0.4
219,998 + MPMX20_00210 0.50 -0.2
220,052 - MPMX20_00210 0.68 +0.5
220,100 - MPMX20_00210 0.83 -0.8
220,156 + -0.2
220,314 + +0.5
220,358 + -0.8
220,366 - +1.4
220,372 + -2.0
220,380 - -1.1
220,397 - -3.0
220,444 + +0.1
220,444 + +0.1
220,452 - +1.1
220,457 - +0.1
220,505 + MPMX20_00211 0.11 -2.1
220,508 - MPMX20_00211 0.11 -0.4
220,548 + MPMX20_00211 0.14 +0.0
220,548 + MPMX20_00211 0.14 -1.5
220,548 + MPMX20_00211 0.14 -0.1
220,640 + MPMX20_00211 0.20 -0.8
220,645 + MPMX20_00211 0.20 +0.2
220,686 + MPMX20_00211 0.23 -1.7
220,709 - MPMX20_00211 0.25 -2.8
220,851 + MPMX20_00211 0.34 -1.1
220,859 - MPMX20_00211 0.34 -1.3
220,859 - MPMX20_00211 0.34 -1.7
220,902 - MPMX20_00211 0.37 -1.4
221,008 - MPMX20_00211 0.44 +1.8
221,013 - MPMX20_00211 0.44 -0.7
221,033 + MPMX20_00211 0.46 -0.9
221,076 + MPMX20_00211 0.48 -2.0
221,096 - MPMX20_00211 0.50 -2.1
221,202 + MPMX20_00211 0.56 +0.3
221,254 - MPMX20_00211 0.60 +3.0
221,254 - MPMX20_00211 0.60 +1.1
221,259 + MPMX20_00211 0.60 +1.2
221,269 + MPMX20_00211 0.61 -2.1
221,269 + MPMX20_00211 0.61 -1.5
221,275 + MPMX20_00211 0.61 -0.8
221,277 - MPMX20_00211 0.61 -0.4
221,277 - MPMX20_00211 0.61 -2.7
221,377 + MPMX20_00211 0.68 -0.7
221,399 - MPMX20_00211 0.69 -0.5
221,582 + MPMX20_00211 0.81 -3.4
221,588 + MPMX20_00211 0.82 -1.2
221,590 - MPMX20_00211 0.82 -0.1
221,784 + -1.5
221,790 - +0.8
221,794 + -1.1
221,794 + -3.0
221,794 + +0.3
221,794 + -0.3
221,794 + -0.8
221,794 + +0.7
221,794 + -0.3
221,802 - -0.3
221,802 - +0.2
221,802 - -0.6
221,802 - -1.5
221,823 - -0.2
221,868 + -0.1
221,875 + -1.0
221,876 - -2.7
221,883 - +0.7
221,920 - -1.6
221,925 + +0.7
221,927 + -1.0
221,938 + -0.8
221,938 + -1.2
221,938 + +0.8
221,946 - -1.9
222,017 + +1.8
222,048 + +0.0
222,048 + -0.9
222,056 - -0.3
222,056 - +0.4
222,056 - -1.7
222,096 - -0.1
222,096 - -2.2
222,221 + +0.3
222,243 - -0.3
222,245 + -0.6
222,255 + -0.3
222,281 + -1.5
222,410 - MPMX20_00212 0.18 -1.3
222,525 + MPMX20_00212 0.28 -0.6
222,546 + MPMX20_00212 0.30 +1.2
222,599 + MPMX20_00212 0.35 -1.4
222,629 - MPMX20_00212 0.38 -0.0
222,696 + MPMX20_00212 0.44 -0.3
222,831 + MPMX20_00212 0.55 -0.0
222,839 - MPMX20_00212 0.56 -0.5
222,853 + MPMX20_00212 0.57 -1.2

Or see this region's nucleotide sequence